>SHB790 (SHB790Q) /CSM/SH/SHB7-D/SHB790Q.Seq.d/
XXXXXXXXXXACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTC
AAGCAACAAATGTTGAACAACNAATCGTTGAACNACTTAAAGTTATCAAAGAATTTCAAA
GACAAGATCAACAAAAGAAACNAAAAATTCAACAAGAGAACGATGC

---LNENENQQQQQGQQQVQATNVEQXIVEXLKVIKEFQRQDQQKKXKIQQEND

Frame A:
---LNENENQQQQQGQQQVQATNVEQXIVEXLKVIKEFQRQDQQKKXKIQQEND


Frame B:
---lmrmkinnnnkdnnkfkqqmlnnxslnxlklsknfkdkinkrnxkfnkrtm


Frame C:
---**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknstrerc

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHL874 (CHL874Q) /CSM/CH/CHL8-D/CHL874Q.Seq.d/                        155   2e-37
VHG846 (VHG846Q) /CSM/VH/VHG8-B/VHG846Q.Seq.d/                        155   2e-37
SSE796 (SSE796Q) /CSM/SS/SSE7-D/SSE796Q.Seq.d/                        155   2e-37
SSE727 (SSE727Q) /CSM/SS/SSE7-B/SSE727Q.Seq.d/                        155   2e-37
SLI803 (SLI803Q) /CSM/SL/SLI8-A/SLI803Q.Seq.d/                        155   2e-37
SLI655 (SLI655Q) /CSM/SL/SLI6-C/SLI655Q.Seq.d/                        155   2e-37
SLH374 (SLH374Q) /CSM/SL/SLH3-D/SLH374Q.Seq.d/                        155   2e-37
SLH142 (SLH142Q) /CSM/SL/SLH1-B/SLH142Q.Seq.d/                        155   2e-37
SLG381 (SLG381Q) /CSM/SL/SLG3-D/SLG381Q.Seq.d/                        155   2e-37
SLC743 (SLC743Q) /CSM/SL/SLC7-B/SLC743Q.Seq.d/                        155   2e-37

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   155   6e-38  2
T82672|T82672.1 Hd335-f Adult heart, Clontech Homo sapiens cDNA clone d335-f, mRNA sequence.    44   0.82   1
DT364098|DT364098.1 JGI_ANNN9278.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN9278 3', mRNA sequence.    42   3.2    1
DT347978|DT347978.1 JGI_CAAX10802.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX10802 5', mRNA sequence.    42   3.2    1
DT309975|DT309975.1 JGI_CAAX1517.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 5', mRNA sequence.    42   3.2    1
DT309974|DT309974.1 JGI_CAAX1517.rev CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 3', mRNA sequence.    42   3.2    1
DT102344|DT102344.1 JGI_ANNN5669.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN5669 3', mRNA sequence.    42   3.2    1
CA966907|CA966907.2 CcLL10a35e10f1 Carp liver library 5 Cyprinus carpio cDNA clone 35e10 5' similar to zgc.nt BC059805, mRNA sequence.    42   3.2    1
AC127965|AC127965.2 Rattus norvegicus clone CH230-280G5, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    42   3.2    1
AC109656|AC109656.5 Rattus norvegicus clone CH230-240N3, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.    42   3.2    1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 39,128,485

 psg: 0.75  gvh: 0.19  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 24.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SHB790 is nuc

>SHB790Z.Seq
NNNNNNNNNNACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTC
AAGCAACAAATGTTGAACAACNAATCGTTGAACNACTTAAAGTTATCAAAGAATTTCAAA
GACAAGATCAACAAAAGAAACNAAAAATTCAACAAGAGAACGATGC