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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHB776
Library SH
(Link to library)
Clone ID SHB776
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID SHB776P
(Link to Original site)
Representative DNA sequence 
>SHB776 (SHB776Q) /CSM/SH/SHB7-D/SHB776Q.Seq.d/
ACTGTTGGCCTACTGGAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTT
TAAAGTTTAAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAA
AAAXXXXXXXXXXTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATG
AAGTTGCNTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAGTGGACC
NATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAAC
AACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACNACAAGTTCAAGCNACAA
ATGTTGAACAACAAATCGTTGAACNGACTTAAAGTTATCAAAGAATTTCAAAGACAAGAT
CAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAA
AAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGAT
GAGAATTTAGTTCAAGAGAAAC
sequence update 2002.10.25
Translated Amino Acid sequence 
cwptginllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---IENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEVDXLELLLEENEEEQFSNKNLQQL
NENENQQQQQGQXQVQATNVEQQIVEXT*syqrisktrstketknstrercclle*c*ks
st*igc*ig*k**tresr*efssre
Translated Amino Acid sequence (All Frames) 
Frame A:
tvglle*iyyqitifsflsf*slnnrnnkn*y*kkgtlkkk---

---y*kw*ryr*v*scpt*scxfr*k*trcc*itk*sgpirtlt*re*rrtifk*kfttt
**e*ksttttrtttsssxkc*ttnr*tdlklsknfkdkinkrnkkfnkrtmlst*vmlkk
lnlnwmlnwlkiinkrikmri*fkrn

Frame B:
llaywnkftik*lfflfflfkv*iieiikinikkker*kk---

---IENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEVDXLELLLEENEEEQFSNKNLQQL
NENENQQQQQGQXQVQATNVEQQIVEXT*syqrisktrstketknstrercclle*c*ks
st*igc*ig*k**tresr*efssre

Frame C:
cwptginllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---lkmvkismsmklpnmklxf*mkmnkmllnykmkwtx*nsylkrmkknnfqikiynnl
mrmkinnnnkdnxkfkxqmlnnkslnxlkvikefqrqdqqkkqkiqqendavylsdveka
qleldaelaknnkqenqdenlvqek
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHB776 (SHB776Q) /CSM/SH/SHB7-D/SHB776Q.Seq.d/                        367   e-100
AHF513 (AHF513Q) /CSM/AH/AHF5-A/AHF513Q.Seq.d/                        357   1e-97
SHB376 (SHB376Q) /CSM/SH/SHB3-D/SHB376Q.Seq.d/                        353   2e-96
AHK417 (AHK417Q) /CSM/AH/AHK4-A/AHK417Q.Seq.d/                        353   2e-96
AHF321 (AHF321Q) /CSM/AH/AHF3-A/AHF321Q.Seq.d/                        353   2e-96
CHL874 (CHL874Q) /CSM/CH/CHL8-D/CHL874Q.Seq.d/                        351   7e-96
VHG846 (VHG846Q) /CSM/VH/VHG8-B/VHG846Q.Seq.d/                        351   7e-96
SSE796 (SSE796Q) /CSM/SS/SSE7-D/SSE796Q.Seq.d/                        351   7e-96
SLI803 (SLI803Q) /CSM/SL/SLI8-A/SLI803Q.Seq.d/                        351   7e-96
SLI655 (SLI655Q) /CSM/SL/SLI6-C/SLI655Q.Seq.d/                        351   7e-96
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   349   0.0    3
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   113   4e-21  1
DT633626|DT633626.1 EST1148557 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFW90 3' end, mRNA sequence.    48   0.20   1
CJ448179|CJ448179.1 Macaca fascicularis mRNA, clone: QflA-13542, 5' end, expressed in brain frontal lobe.    48   0.20   1
DT364098|DT364098.1 JGI_ANNN9278.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN9278 3', mRNA sequence.    48   0.20   1
DT347978|DT347978.1 JGI_CAAX10802.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX10802 5', mRNA sequence.    48   0.20   1
DT309975|DT309975.1 JGI_CAAX1517.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 5', mRNA sequence.    48   0.20   1
DT102344|DT102344.1 JGI_ANNN5669.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN5669 3', mRNA sequence.    48   0.20   1
DT309974|DT309974.1 JGI_CAAX1517.rev CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 3', mRNA sequence.    48   0.20   1
DR686823|DR686823.1 EST1076901 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PWABK24 3' end, mRNA sequence.    48   0.20   1
dna update 2005.12.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...    88   1e-35
protein update 2008.11.13
PSORT 

 psg: 0.42  gvh: 0.17  alm: 0.62  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SHB776 is nuc
5' end seq. ID SHB776F
5' end seq. 
>SHB776F.Seq
ACTGTTGGCCTACTGGAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTT
TAAAGTTTAAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAA
AAANNNNNNNNNN
Length of 5' end seq. 133
3' end seq. ID SHB776Z
3' end seq. 
>SHB776Z.Seq
NNNNNNNNNNTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAG
TTGCNTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAGTGGACCNAT
TAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAAC
TTAATGAGAATGAAAATCAACAACAACAACAAGGACAACNACAAGTTCAAGCNACAAATG
TTGAACAACAAATCGTTGAACNGACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAA
CAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAA
GCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAG
AATTTAGTTCAAGAGAAAC
Length of 3' end seq. 439
Connected seq. ID SHB776P
Connected seq. 
>SHB776P.Seq
ACTGTTGGCCTACTGGAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTT
TAAAGTTTAAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAA
AAA----------TATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATG
AAGTTGCNTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAGTGGACC
NATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAAC
AACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACNACAAGTTCAAGCNACAA
ATGTTGAACAACAAATCGTTGAACNGACTTAAAGTTATCAAAGAATTTCAAAGACAAGAT
CAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAA
AAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGAT
GAGAATTTAGTTCAAGAGAAAC
Length of connected seq. 552
Full length Seq ID -
Full length Seq. -
Length of full length seq. -