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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHB736
Library SH
(Link to library)
Clone ID SHB736
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID SHB736P
(Link to Original site)
Representative DNA sequence 
>SHB736 (SHB736Q) /CSM/SH/SHB7-B/SHB736Q.Seq.d/
ACTGTTGGCCTACTGGATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTT
TTTAAAGTTTAAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGANCGTTAAAAA
AAAAAXXXXXXXXXXTAAATTNCAGAAATGAAATGGACCAATTAGAANTCTTACTTGAAG
AGAATGAAGAAGAACAATTCTCAAATAAAAATTTNCAGCANCTTAATGAGAATGAAAATC
ACCAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTG
AACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTC
AACAAGAGAACGATGCTGTNATANTTGAGTGATGTTGANNCCCGCTCNACTTGAATTGGA
TGCTGAATTGGATAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAA
AC
sequence update 2002.10.25
Translated Amino Acid sequence 
llaywiinllsnnyfffsfflkfk**k**KLILKKRXVKKK---

---NXRNEMDQLEXLLEENEEEQFSNKNXQXLNENENHQQQQGQQQVQATNVEQQIVEQL
KVIKEFQRQDQQKKQKIQQENDAVIXE*c*xplxlnwmlnwikiinkrikmri*fkrn
Translated Amino Acid sequence (All Frames) 
Frame A:
tvglldnkftik*lfflfflfkv*iieiikinikkkxr*kk---

---*ixemkwtn*xsylkrmkknnsqikixsxlmrmkitnnnkdnnkfkqqmlnnkslnn
lklsknfkdkinkrnkkfnkrtmlxxlsdvxxrst*igc*ig*k**tresr*efssre

Frame B:
llaywiinllsnnyfffsfflkfk**k**KLILKKRXVKKK---

---kxqk*ngpirxlt*re*rrtilk*kfxax**e*ksptttrtttsssnkc*ttnr*tt
*syqrisktrstketknstrerccxx*vmlxpaxleldaeldknnkqenqdenlvqek

Frame C:
cwptg**iyyqitifsflsf*slnnrnnkn*y*kkgxlkkk---

---NXRNEMDQLEXLLEENEEEQFSNKNXQXLNENENHQQQQGQQQVQATNVEQQIVEQL
KVIKEFQRQDQQKKQKIQQENDAVIXE*c*xplxlnwmlnwikiinkrikmri*fkrn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHB736 (SHB736Q) /CSM/SH/SHB7-B/SHB736Q.Seq.d/                        194   9e-49
SHL881 (SHL881Q) /CSM/SH/SHL8-D/SHL881Q.Seq.d/                        165   8e-40
SHE121 (SHE121Q) /CSM/SH/SHE1-A/SHE121Q.Seq.d/                        165   8e-40
SHB336 (SHB336Q) /CSM/SH/SHB3-B/SHB336Q.Seq.d/                        165   8e-40
CHG506 (CHG506Q) /CSM/CH/CHG5-A/CHG506Q.Seq.d/                        165   8e-40
AHO840 (AHO840Q) /CSM/AH/AHO8-B/AHO840Q.Seq.d/                        165   8e-40
CHM450 (CHM450Q) /CSM/CH/CHM4-C/CHM450Q.Seq.d/                        159   5e-38
AHO236 (AHO236Q) /CSM/AH/AHO2-B/AHO236Q.Seq.d/                        159   5e-38
CHL874 (CHL874Q) /CSM/CH/CHL8-D/CHL874Q.Seq.d/                        157   2e-37
VHP272 (VHP272Q) /CSM/VH/VHP2-C/VHP272Q.Seq.d/                        157   2e-37
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   157   3e-93  5
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    92   1e-14  1
DT461480|DT461480.1 GH_ON40P21.r GH_ON Gossypium hirsutum cDNA clone GH_ON40P21 3', mRNA sequence.    46   0.66   1
CJ464211|CJ464211.1 Macaca fascicularis mRNA, clone: QnpA-12857, 5' end, expressed in brain parietal lobe.    46   0.66   1
CJ491677|CJ491677.1 Macaca fascicularis mRNA, clone: QtsA-19623, 5' end, expressed in testis.    46   0.66   1
CJ493075|CJ493075.1 Macaca fascicularis mRNA, clone: QtsA-21113, 5' end, expressed in testis.    40   1.1    2
AC087613|AC087613.5 Homo sapiens chromosome 11 clone RP11-349C8 map 11, WORKING DRAFT SEQUENCE, 8 unordered pieces.    32   1.3    2
AP001767|AP001767.5 Homo sapiens genomic DNA, chromosome 11 clone:RP11-113K21, complete sequence.    32   1.3    2
CJ486156|CJ486156.1 Macaca fascicularis mRNA, clone: QtsA-13769, 5' end, expressed in testis.    44   2.6    1
CJ476398|CJ476398.1 Macaca fascicularis mRNA, clone: QtrA-10635, 5' end, expressed in brain temporal lobe.    44   2.6    1
dna update 2005.12.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...    37   2e-04
protein update 2008.11.13
PSORT 

 psg: 0.29  gvh: 0.14  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.39  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial

>> prediction for SHB736 is nuc
5' end seq. ID SHB736F
5' end seq. 
>SHB736F.Seq
ACTGTTGGCCTACTGGATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTT
TTTAAAGTTTAAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGANCGTTAAAAA
AAAAANNNNNNNNNN
Length of 5' end seq. 135
3' end seq. ID SHB736Z
3' end seq. 
>SHB736Z.Seq
NNNNNNNNNNTAAATTNCAGAAATGAAATGGACCAATTAGAANTCTTACTTGAAGAGAAT
GAAGAAGAACAATTCTCAAATAAAAATTTNCAGCANCTTAATGAGAATGAAAATCACCAA
CAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAA
CTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAA
GAGAACGATGCTGTNATANTTGAGTGATGTTGANNCCCGCTCNACTTGAATTGGATGCTG
AATTGGATAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAAC
Length of 3' end seq. 357
Connected seq. ID SHB736P
Connected seq. 
>SHB736P.Seq
ACTGTTGGCCTACTGGATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTT
TTTAAAGTTTAAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGANCGTTAAAAA
AAAAA----------TAAATTNCAGAAATGAAATGGACCAATTAGAANTCTTACTTGAAG
AGAATGAAGAAGAACAATTCTCAAATAAAAATTTNCAGCANCTTAATGAGAATGAAAATC
ACCAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTG
AACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTC
AACAAGAGAACGATGCTGTNATANTTGAGTGATGTTGANNCCCGCTCNACTTGAATTGGA
TGCTGAATTGGATAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAA
AC
Length of connected seq. 472
Full length Seq ID -
Full length Seq. -
Length of full length seq. -