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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHB735
Library SH
(Link to library)
Clone ID SHB735
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16579-1
Original site URL
Representative seq. ID SHB735P
(Link to Original site)
Representative DNA sequence 
>SHB735 (SHB735Q) /CSM/SH/SHB7-B/SHB735Q.Seq.d/
ACTGTTGGCCTACTGGNAATTAAATTGCACATGTGCAATGAAAAATAGGAGCTCTTAGTG
GGCCATTTTTGGTAAGCAGAACTGGCGATGTGGGTTGAACCAAATATTGGGATAAGACGT
CTAACATTCACTAATAGATACCACAAAAGGTGTTAGTTCATTAAGACAGCAGGACGGTGG
CCATGGAAGTCGGTATCCGCTAAGGAGTGTGTAACAACTCACCTGCCAAATGGACTAGCC
CTGAAAATGGATGACGCTAGCAGTGGATGGTCGATGCCCAATCGTTAAAAGAAGTGATAA
TACTTTTAACGTGTAGGAAGGCGTGAAGGTAACGTAGAAGCTTGAATGTGAATTCGAGTG
GAGTTGTCTTTAGTGCAGATCTTGATGGTAGTAGCAAATATTCAAAAGAATTTACTTTGA
AGGCCGAAGTGGGGAAGGGTTCCATAACAATGGAATTCACTCATGGGTGAGTCGATCCTA
AGGTTTGGGTTAACTCTCTCTAATAAGGTTACTAGGTCATTGGATCGAAAGTGAAGGTGG
CTTTAACACTAGTGACTTTATAGGCCGAAAGGGAAGCGGGTTAAAATTCCTGCACCATCG
AATGGGATATTXXXXXXXXXXCCTTTAAGTCAGAATCCATTTTAGAAACGCAAACCAAAT
GCTTTAGAGTGTGAATGTTGTAGGTAACATTAGGTTGTTGGTGGGGGACCACTTTCAACT
TTAANCCATATGATTAATCGCTGTTACACTGCAGTTTCCTTCCGGTTATTGTGGTGGGTG
GCATAAATTCATAATTTATATCCTCGTTCCGCTCAAATNTTCGATTGTAGACGACTATCA
AATGAAATAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGTTACGAGGGGTTGAGGCTTTTC
CATTAGTTCTTAGATTCAATAAAGGAGGATATTGCAAATTGTAGTGAAAAATCATTTAAA
ACATTATCATTAAAAGATGCAGAAAAAGTATTATTATTCAATGATAACAATCAATTCCAA
CAATACATTAAGGAAAGAAATTGGAAAGTTCAAGGTGATGTAATTCAATTTGGAAATAAT
GATAATC
sequence update 2002.10.25
Translated Amino Acid sequence 
llaywxlnctcamknrss*waifgkqnwrcglnqilg*dv*hslidttkgvsslrqqdgg
hgsryplrsv*qltcqmd*p*kwmtlavdgrcpivkrsdntfnv*egvkvt*klecefew
scl*crs*w**qifkriyfegrsgegfhnngihswvsrs*glg*LSLIRLLGHWIESEGG
FNTSDFIGRKGSGLKFLHHRMGY---

---FKSESILETQTKCFRV*ml*vtlgcwwgttfnfxpyd*sllhcsflpvivvggins*
fissfrsnxrl*ttik*nrccklpssvqlrgveafplvlrfnkggyckl**kii*niiik
rcrksiiiq**qsiptih*gkklessr*cnsiwk***
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllxiklhmcnek*ellvghfw*aelamwvepnigirrltftnryhkrc*fiktagrw
pwksvsakecvtthlpnglalkmddassgwsmpnr*kk**yf*rvgrregnvea*m*irv
elslvqilmvvaniqknll*rpkwgrvp*qwnslmgesilrfgltlsnkvtrsldrk*rw
l*h**lyrpkgkrvkipapsngi---

---plsqnpf*krkpnalececcr*h*vvgggplstlxhminrcytavsfrllwwva*ih
nlyprsaqxfdcrrlsneigavsfrvafsyeglrlfh*fldsikediancseksfktlsl
kdaekvllfndnnqfqqyikernwkvqgdviqfgnndn

Frame B:
llaywxlnctcamknrss*waifgkqnwrcglnqilg*dv*hslidttkgvsslrqqdgg
hgsryplrsv*qltcqmd*p*kwmtlavdgrcpivkrsdntfnv*egvkvt*klecefew
scl*crs*w**qifkriyfegrsgegfhnngihswvsrs*glg*LSLIRLLGHWIESEGG
FNTSDFIGRKGSGLKFLHHRMGY---

---l*vrihfrnanqml*svnvvgnirllvgdhfql*xi*liavtlqfpsgycggwhkfi
iyilvplkxsivddyqmk*vl*ase*rsvtrg*gfsiss*iq*rrilqivvknhlkhyh*
kmqkkyyysmitinsnntlrkeigkfkvm*fnleimii

Frame C:
cwptgn*iahvq*kigalsgpflvsrtgdvg*tkywdktsnih**ipqkvlvh*dsrtva
mevgir*gvcnnspakwtspeng*r*qwmvdaqslkeviilltcrka*r*rrslnvnssg
vvfsadldgsskyskeftlkaevgkgsitmefthg*vdpkvwvnsl**gy*vigskvkva
ltlvtl*aereag*nsctiewdi---

---FKSESILETQTKCFRV*ml*vtlgcwwgttfnfxpyd*sllhcsflpvivvggins*
fissfrsnxrl*ttik*nrccklpssvqlrgveafplvlrfnkggyckl**kii*niiik
rcrksiiiq**qsiptih*gkklessr*cnsiwk***
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHB735 (SHB735Q) /CSM/SH/SHB7-B/SHB735Q.Seq.d/                       2077   0.0
VHL212 (VHL212Q) /CSM/VH/VHL2-A/VHL212Q.Seq.d/                       1170   0.0
VHG394 (VHG394Q) /CSM/VH/VHG3-D/VHG394Q.Seq.d/                       1170   0.0
SHE483 (SHE483Q) /CSM/SH/SHE4-D/SHE483Q.Seq.d/                       1170   0.0
AHF338 (AHF338Q) /CSM/AH/AHF3-B/AHF338Q.Seq.d/                       1168   0.0
VHI538 (VHI538Q) /CSM/VH/VHI5-B/VHI538Q.Seq.d/                       1166   0.0
SHG119 (SHG119Q) /CSM/SH/SHG1-A/SHG119Q.Seq.d/                       1166   0.0
VHK190 (VHK190Q) /CSM/VH/VHK1-D/VHK190Q.Seq.d/                       1164   0.0
VHP355 (VHP355Q) /CSM/VH/VHP3-C/VHP355Q.Seq.d/                       1162   0.0
VHM465 (VHM465Q) /CSM/VH/VHM4-C/VHM465Q.Seq.d/                       1158   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY171066|AY171066.1 Dictyostelium discoideum extrachromosomal palindromic ribosomal RNA gene sequence, central segment.  1170   0.0    1
X00601|X00601.1 Dictyostelium discoideum ribosomal RNA gene.     1162   0.0    1
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.   325   1e-84  1
CZ283929|CZ283929.1 cp32e11.f Candida parapsilosis Random Genomic Library Candida parapsilosis genomic clone cp32e11, genomic survey sequence.   172   4e-80  6
DQ273839|DQ273839.1 Chytriomyces spinosus isolate AFTOL-ID 1540 28S ribosomal RNA gene, partial sequence.   190   4e-80  4
DQ273827|DQ273827.1 Paraglomus occultum isolate AFTOL-ID 844 28S ribosomal RNA gene, partial sequence.   188   4e-80  5
CZ283727|CZ283727.1 cp31e01.r Candida parapsilosis Random Genomic Library Candida parapsilosis genomic clone cp31e01, genomic survey sequence.   172   5e-80  6
CZ284282|CZ284282.1 cp34f03.r Candida parapsilosis Random Genomic Library Candida parapsilosis genomic clone cp34f03, genomic survey sequence.   172   5e-80  6
CZ288750|CZ288750.1 cp60a04.f Candida parapsilosis Random Genomic Library Candida parapsilosis genomic clone cp60a04, genomic survey sequence.   172   5e-80  6
CZ280785|CZ280785.1 cp13d02.r Candida parapsilosis Random Genomic Library Candida parapsilosis genomic clone cp13d02, genomic survey sequence.   172   5e-80  6
dna update 2005.12.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P02889) RecName: Full=Probable 26S proteasome non-ATPase regula...   122   3e-26
CP000497_644(CP000497|pid:none) Pichia stipitis CBS 6054 chromos...    60   7e-14
U12823_1(U12823|pid:none) Acanthamoeba polyphaga CDC:0187:1 hemo...    45   3e-05
EF677720_1(EF677720|pid:none) Picea sitchensis clone WS02773_J23...    50   2e-04
CR382124_471(CR382124|pid:none) Kluyveromyces lactis strain NRRL...    48   5e-04
BT052854_1(BT052854|pid:none) Medicago truncatula clone MTYFL_FM...    48   6e-04
EF145103_1(EF145103|pid:none) Populus trichocarpa clone WS01120_...    47   8e-04
BT047981_1(BT047981|pid:none) Salmo salar clone ssal-eve-501-254...    46   0.002
BT034977_1(BT034977|pid:none) Zea mays full-length cDNA clone ZM...    45   0.003
EU955547_1(EU955547|pid:none) Zea mays clone 1536647 hypothetica...    45   0.005
protein update 2009. 4.15
PSORT 

 psg: 0.76  gvh: 0.58  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 24.0 %: mitochondrial
	 24.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for SHB735 is nuc
5' end seq. ID SHB735F
5' end seq. 
>SHB735F.Seq
ACTGTTGGCCTACTGGNAATTAAATTGCACATGTGCAATGAAAAATAGGAGCTCTTAGTG
GGCCATTTTTGGTAAGCAGAACTGGCGATGTGGGTTGAACCAAATATTGGGATAAGACGT
CTAACATTCACTAATAGATACCACAAAAGGTGTTAGTTCATTAAGACAGCAGGACGGTGG
CCATGGAAGTCGGTATCCGCTAAGGAGTGTGTAACAACTCACCTGCCAAATGGACTAGCC
CTGAAAATGGATGACGCTAGCAGTGGATGGTCGATGCCCAATCGTTAAAAGAAGTGATAA
TACTTTTAACGTGTAGGAAGGCGTGAAGGTAACGTAGAAGCTTGAATGTGAATTCGAGTG
GAGTTGTCTTTAGTGCAGATCTTGATGGTAGTAGCAAATATTCAAAAGAATTTACTTTGA
AGGCCGAAGTGGGGAAGGGTTCCATAACAATGGAATTCACTCATGGGTGAGTCGATCCTA
AGGTTTGGGTTAACTCTCTCTAATAAGGTTACTAGGTCATTGGATCGAAAGTGAAGGTGG
CTTTAACACTAGTGACTTTATAGGCCGAAAGGGAAGCGGGTTAAAATTCCTGCACCATCG
AATGGGATATTNNNNNNNNNN
Length of 5' end seq. 621
3' end seq. ID SHB735Z
3' end seq. 
>SHB735Z.Seq
NNNNNNNNNNCCTTTAAGTCAGAATCCATTTTAGAAACGCAAACCAAATGCTTTAGAGTG
TGAATGTTGTAGGTAACATTAGGTTGTTGGTGGGGGACCACTTTCAACTTTAANCCATAT
GATTAATCGCTGTTACACTGCAGTTTCCTTCCGGTTATTGTGGTGGGTGGCATAAATTCA
TAATTTATATCCTCGTTCCGCTCAAATNTTCGATTGTAGACGACTATCAAATGAAATAGG
TGCTGTAAGCTTCCGAGTAGCGTTCAGTTACGAGGGGTTGAGGCTTTTCCATTAGTTCTT
AGATTCAATAAAGGAGGATATTGCAAATTGTAGTGAAAAATCATTTAAAACATTATCATT
AAAAGATGCAGAAAAAGTATTATTATTCAATGATAACAATCAATTCCAACAATACATTAA
GGAAAGAAATTGGAAAGTTCAAGGTGATGTAATTCAATTTGGAAATAATGATAATC
Length of 3' end seq. 476
Connected seq. ID SHB735P
Connected seq. 
>SHB735P.Seq
ACTGTTGGCCTACTGGNAATTAAATTGCACATGTGCAATGAAAAATAGGAGCTCTTAGTG
GGCCATTTTTGGTAAGCAGAACTGGCGATGTGGGTTGAACCAAATATTGGGATAAGACGT
CTAACATTCACTAATAGATACCACAAAAGGTGTTAGTTCATTAAGACAGCAGGACGGTGG
CCATGGAAGTCGGTATCCGCTAAGGAGTGTGTAACAACTCACCTGCCAAATGGACTAGCC
CTGAAAATGGATGACGCTAGCAGTGGATGGTCGATGCCCAATCGTTAAAAGAAGTGATAA
TACTTTTAACGTGTAGGAAGGCGTGAAGGTAACGTAGAAGCTTGAATGTGAATTCGAGTG
GAGTTGTCTTTAGTGCAGATCTTGATGGTAGTAGCAAATATTCAAAAGAATTTACTTTGA
AGGCCGAAGTGGGGAAGGGTTCCATAACAATGGAATTCACTCATGGGTGAGTCGATCCTA
AGGTTTGGGTTAACTCTCTCTAATAAGGTTACTAGGTCATTGGATCGAAAGTGAAGGTGG
CTTTAACACTAGTGACTTTATAGGCCGAAAGGGAAGCGGGTTAAAATTCCTGCACCATCG
AATGGGATATT----------CCTTTAAGTCAGAATCCATTTTAGAAACGCAAACCAAAT
GCTTTAGAGTGTGAATGTTGTAGGTAACATTAGGTTGTTGGTGGGGGACCACTTTCAACT
TTAANCCATATGATTAATCGCTGTTACACTGCAGTTTCCTTCCGGTTATTGTGGTGGGTG
GCATAAATTCATAATTTATATCCTCGTTCCGCTCAAATNTTCGATTGTAGACGACTATCA
AATGAAATAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGTTACGAGGGGTTGAGGCTTTTC
CATTAGTTCTTAGATTCAATAAAGGAGGATATTGCAAATTGTAGTGAAAAATCATTTAAA
ACATTATCATTAAAAGATGCAGAAAAAGTATTATTATTCAATGATAACAATCAATTCCAA
CAATACATTAAGGAAAGAAATTGGAAAGTTCAAGGTGATGTAATTCAATTTGGAAATAAT
GATAATC
Length of connected seq. 1077
Full length Seq ID -
Full length Seq. -
Length of full length seq. -