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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHB725
Library SH
(Link to library)
Clone ID SHB725
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID SHB725P
(Link to Original site)
Representative DNA sequence 
>SHB725 (SHB725Q) /CSM/SH/SHB7-B/SHB725Q.Seq.d/
ACTGTTGGCCTACTGGNAAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTT
CTTTTTAAAGTTTAAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAA
AAAAAAAAXXXXXXXXXXAAAAATTTACAGACAACTTAATGAGAATGAAAATCAACAACA
ACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACT
TAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGA
GAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATT
GGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATC
TCNTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACA
NCAAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGA
sequence update 2002.10.25
Translated Amino Acid sequence 
llaywxiinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---KIYRQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDA
VYLSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSXDQIKNQLKNIQHEQQIQEXQDK
LNQEKNQQLL
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllxnnkftik*lfflfflfkv*iieiikinikkker*kk---

---knlqtt**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknstrerc
clle*c*ksst*igc*ig*k**tresr*efssrettis*pn*ksikkyst*ttnprtxr*
iksrkkstiir

Frame B:
llaywxiinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---KIYRQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDA
VYLSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSXDQIKNQLKNIQHEQQIQEXQDK
LNQEKNQQLL

Frame C:
cwptgk**iyyqitifsflsf*slnnrnnkn*y*kkgtlkkk---

---kftdnlmrmkinnnnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfnkrtml
st*vmlkklnlnwmlnwlkiinkrikmri*fkrnnnlxtklkin*kifnmnnksknxkin
*ikkkinny*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHG846 (VHG846Q) /CSM/VH/VHG8-B/VHG846Q.Seq.d/                        537   e-152
SLI803 (SLI803Q) /CSM/SL/SLI8-A/SLI803Q.Seq.d/                        537   e-152
SLI655 (SLI655Q) /CSM/SL/SLI6-C/SLI655Q.Seq.d/                        537   e-152
SLH374 (SLH374Q) /CSM/SL/SLH3-D/SLH374Q.Seq.d/                        537   e-152
SLH142 (SLH142Q) /CSM/SL/SLH1-B/SLH142Q.Seq.d/                        537   e-152
SLG381 (SLG381Q) /CSM/SL/SLG3-D/SLG381Q.Seq.d/                        537   e-152
SLC743 (SLC743Q) /CSM/SL/SLC7-B/SLC743Q.Seq.d/                        537   e-152
SLB365 (SLB365Q) /CSM/SL/SLB3-C/SLB365Q.Seq.d/                        537   e-152
SLA333 (SLA333Q) /CSM/SL/SLA3-B/SLA333Q.Seq.d/                        537   e-152
SHL894 (SHL894Q) /CSM/SH/SHL8-D/SHL894Q.Seq.d/                        537   e-152
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   535   e-162  4
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence.    36   0.14   5
DT364098|DT364098.1 JGI_ANNN9278.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN9278 3', mRNA sequence.    48   0.18   1
DT347978|DT347978.1 JGI_CAAX10802.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX10802 5', mRNA sequence.    48   0.18   1
DT309975|DT309975.1 JGI_CAAX1517.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 5', mRNA sequence.    48   0.18   1
DT309974|DT309974.1 JGI_CAAX1517.rev CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 3', mRNA sequence.    48   0.18   1
DT102344|DT102344.1 JGI_ANNN5669.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN5669 3', mRNA sequence.    48   0.18   1
CA966907|CA966907.2 CcLL10a35e10f1 Carp liver library 5 Cyprinus carpio cDNA clone 35e10 5' similar to zgc.nt BC059805, mRNA sequence.    48   0.18   1
AC124708|AC124708.2 Mus musculus chromosome 6 clone RP24-79O16, complete sequence.    48   0.18   1
AC090712|AC090712.4 Mus musculus chromosome 6 clone RP23-230F22 strain C57BL6/J, complete sequence.    48   0.18   1
dna update 2005.12.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   133   3e-30
AC117070_42(AC117070|pid:none) Dictyostelium discoideum chromoso...    37   0.28
(Q54F33) RecName: Full=Uncharacterized protein DDB_G0291143;           35   1.4
CP000806_1851(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...    34   1.8
AE016819_111(AE016819|pid:none) Ashbya gossypii (= Eremothecium ...    34   2.4
AP009240_1649(AP009240|pid:none) Escherichia coli SE11 DNA, comp...    33   4.0
(P47048) RecName: Full=Uncharacterized protein YJL049W;  &AY6926...    33   5.3
AE017346_327(AE017346|pid:none) Cryptococcus neoformans var. neo...    33   5.3
AP009049_1790(AP009049|pid:none) Clostridium kluyveri NBRC 12016...    32   6.9
CP000673_1992(CP000673|pid:none) Clostridium kluyveri DSM 555, c...    32   6.9
protein update 2009. 4.15
PSORT 

 psg: 0.41  gvh: 0.11  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.38  mip: 0.04
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 32.0 %: cytoplasmic
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for SHB725 is nuc
5' end seq. ID SHB725F
5' end seq. 
>SHB725F.Seq
ACTGTTGGCCTACTGGNAAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTT
CTTTTTAAAGTTTAAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAA
AAAAAAAANNNNNNNNNN
Length of 5' end seq. 138
3' end seq. ID SHB725Z
3' end seq. 
>SHB725Z.Seq
NNNNNNNNNNAAAAATTTACAGACAACTTAATGAGAATGAAAATCAACAACAACAACAAG
GACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTA
TCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATG
CTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAA
ATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCNTGACC
AAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACANCAAGATA
AATTAAATCAAGAAAAAAATCAACAATTATTAGA
Length of 3' end seq. 394
Connected seq. ID SHB725P
Connected seq. 
>SHB725P.Seq
ACTGTTGGCCTACTGGNAAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTT
CTTTTTAAAGTTTAAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAA
AAAAAAAA----------AAAAATTTACAGACAACTTAATGAGAATGAAAATCAACAACA
ACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACT
TAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGA
GAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATT
GGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATC
TCNTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACA
NCAAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGA
Length of connected seq. 512
Full length Seq ID -
Full length Seq. -
Length of full length seq. -