SHB703
Library SH
(Link to library)
Clone ID SHB703
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16526-1
Original site URL
Representative seq. ID SHB703P
(Link to Original site)
Representative DNA sequence
>SHB703 (SHB703Q) /CSM/SH/SHB7-A/SHB703Q.Seq.d/
AAATTATTATGACTGAAAATAAATATTTAGGTGCTGCTCGTAATACTGCTGCCTCTCAAG
CCAAAGGTAAATATTTAATGTTTTTAGATGATGATAATTATATGTATCCAAATGCAATTT
CAACCTATGTTTCAATCGCTACAAATACAAATGCCAATGTTGTTAGTTCACCACATTCAA
TATTTAATTCAACCAATACTCCAATATCAAATGATGTTATTATTCAAAGACAATGGGTAC
CATTAGGTCCATCACTTTCCGTTGGTCTCTTCAAGAATTGTTTTGGTGATGCAAATTTCT
TTATTGAAAAGTCATCATTTAATTCAATTGGTGGTTTCACTGAGGAAGTTGGTGTTGGTT
TAGAAGATCATGAAATTTTGGCAAAACTTGTTATTCAAGGATTTAAACTTTCCGTTTCAA
CTGAACCATTATTATACTATAGATTCCATGATTCAGTCAATCAAATGATTTTTACAACCG
ATTCAAAATCAAATCAAATGCGTTATATTCGTCCATTCTCTGAAATCCTAAXXXXXXXXX
XATTACAGTTCCATNAAATATTCATTTCAATCATNAATNTGATCAANCCATTTTCCCAAA
AAACTGTTTCACTTGAACTTTTCAATGGTGGCTNTCAATTATCAATCAATGGCNTTAAAG
ATCAAATTATCATTGATATGGGAAAACATTCNCCACCAAAAGATAAAGAATTTAAATGTG
GTTGGTGGAGCTCCAATAAAAAAGAATGGTTAACAGATGGTTGTTCAACCCATAAAGTAG
ATGGTAATATTCAATGTAAATGTAACCATCTTACAGAGTTTGGTTTAATTGAATTTGCAA
AATCCTCTCAAAACATTTGGATCATTATTGGACCAGTAGTTGGTGGTGTTGTATTTGCAG
CTGCAATGGTTGGTACTGTTGTAT
sequence update 2002.10.25
Translated Amino Acid sequence
IIMTENKYLGAARNTAASQAKGKYLMFLDDDNYMYPNAISTYVSIATNTNANVVSSPHSI
FNSTNTPISNDVIIQRQWVPLGPSLSVGLFKNCFGDANFFIEKSSFNSIGGFTEEVGVGL
EDHEILAKLVIQGFKLSVSTEPLLYYRFHDSVNQMIFTTDSKSNQMRYIRPFSEIL---

---LQFHXIFISIXNXIXPFSQKTVSLELFNGGXQLSINGXKDQIIIDMGKHSPPKDKEF
KCGWWSSNKKEWLTDGCSTHKVDGNIQCKCNHLTEFGLIEFAKSSQNIWIIIGPVVGGVV
FAAAMVGTVV


Translated Amino Acid sequence (All Frames)
Frame A:
kll*lkini*vllvillplkpkvni*cf*mmiiiciqmqfqpmfqslqiqmpmllvhhiq
yliqpilqyqmmllfkdngyh*vhhfplvssrivlvmqisllkshhliqlvvslrklvlv
*kimkfwqnllfkdlnfpfqlnhyytidsmiqsik*flqpiqnqikcvifvhslks*---

---itvpxnihfnhxxdqxifpkncft*tfqwwlsiinqwx*rsnyh*ygktfxtkr*ri
*mwlvelq*krmvnrwlfnp*srw*ysm*m*psyrvwfn*ickilskhldhywtsswwcc
icscngwycc

Frame B:
nyyd*k*ifrccs*ycclssqr*ifnvfr***lyvskcnfnlcfnrykykcqcc*fttfn
i*fnqysnik*cyysktmgtirsitfrwslqelfw*ckfly*kvii*fnwwfh*gswcwf
rrs*nfgktcysri*tfrfn*tiiil*ip*fsqsndfynrfkiksnalyssil*np---

---LQFHXIFISIXNXIXPFSQKTVSLELFNGGXQLSINGXKDQIIIDMGKHSPPKDKEF
KCGWWSSNKKEWLTDGCSTHKVDGNIQCKCNHLTEFGLIEFAKSSQNIWIIIGPVVGGVV
FAAAMVGTVV

Frame C:
IIMTENKYLGAARNTAASQAKGKYLMFLDDDNYMYPNAISTYVSIATNTNANVVSSPHSI
FNSTNTPISNDVIIQRQWVPLGPSLSVGLFKNCFGDANFFIEKSSFNSIGGFTEEVGVGL
EDHEILAKLVIQGFKLSVSTEPLLYYRFHDSVNQMIFTTDSKSNQMRYIRPFSEIL---

---yssxkysfqsxx*sxhfpkklfhlnfsmvaxnyqsmalkiklsliwenixhqkiknl
nvvggapikkng*qmvvqpik*mvifnvnvtilqslv*lnlqnplktfgslldq*lvvly
lqlqwlvlly

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHB703 (SHB703Q) /CSM/SH/SHB7-A/SHB703Q.Seq.d/ 1731 0.0
CHI828 (CHI828Q) /CSM/CH/CHI8-B/CHI828Q.Seq.d/ 1053 0.0
CHG580 (CHG580Q) /CSM/CH/CHG5-D/CHG580Q.Seq.d/ 1047 0.0
CHH683 (CHH683Q) /CSM/CH/CHH6-D/CHH683Q.Seq.d/ 1013 0.0
CHO779 (CHO779Q) /CSM/CH/CHO7-D/CHO779Q.Seq.d/ 1005 0.0
CHG590 (CHG590Q) /CSM/CH/CHG5-D/CHG590Q.Seq.d/ 1001 0.0
CHL873 (CHL873Q) /CSM/CH/CHL8-D/CHL873Q.Seq.d/ 991 0.0
CHG348 (CHG348Q) /CSM/CH/CHG3-B/CHG348Q.Seq.d/ 987 0.0
SHB150 (SHB150Q) /CSM/SH/SHB1-C/SHB150Q.Seq.d/ 981 0.0
CHR139 (CHR139Q) /CSM/CH/CHR1-B/CHR139Q.Seq.d/ 957 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC002533|AC002533.1 Homo sapiens clone SCb-24C13 from 7q31.3, complete sequence. 42 1.1 2
BI347313|BI347313.1 fbn-ek036 Cattle pUC18 mammary gland library Bos taurus cDNA, mRNA sequence. 46 1.3 1
AC111313|AC111313.9 Rattus norvegicus clone CH230-243L23, WORKING DRAFT SEQUENCE, 3 unordered pieces. 46 1.3 1
AC111297|AC111297.5 Rattus norvegicus clone CH230-223J18, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces. 46 1.3 1
CZ857443|CZ857443.1 OC__Ba0249B12.r OC__Ba Oryza coarctata genomic clone OC__Ba0249B12 3', genomic survey sequence. 46 1.3 1
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 34 2.6 12
AC149687|AC149687.4 Bos taurus clone CH240-33D14, WORKING DRAFT SEQUENCE, 7 unordered pieces. 32 3.7 6
AC006250|AC006250.4 Arabidopsis thaliana chromosome 2 clone T6A13 map mi398, complete sequence. 42 5.0 4
AE016751|AE016751.1 Staphylococcus epidermidis ATCC 12228, section 8 of 9 of the complete genome. 34 5.1 9
AC119753|AC119753.1 Mus musculus chromosome 2 clone RP23-100N22 map 2E1, *** SEQUENCING IN PROGRESS ***, 13 ordered pieces. 44 5.1 1
dna update 2005.12.27
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000970_2187(CP000970|pid:none) Escherichia coli SMS-3-5, compl... 150 4e-35
CP000113_4498(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 61 4e-08
CP000300_1487(CP000300|pid:none) Methanococcoides burtonii DSM 6... 54 7e-06
CR936503_1574(CR936503|pid:none) Lactobacillus sakei strain 23K ... 53 2e-05
CP001078_2845(CP001078|pid:none) Clostridium botulinum E3 str. A... 52 2e-05
CP000576_1417(CP000576|pid:none) Prochlorococcus marinus str. MI... 52 2e-05
AE005672_129(AE005672|pid:none) Streptococcus pneumoniae TIGR4, ... 52 3e-05
BA000028_2889(BA000028|pid:none) Oceanobacillus iheyensis HTE831... 52 4e-05
DQ465247_7(DQ465247|pid:none) Escherichia coli strain O117 O ant... 51 5e-05
AY177683_3(AY177683|pid:none) Aeromonas hydrophila strain JCM398... 51 6e-05
protein update 2009. 4.15
PSORT

psg: 0.65 gvh: 0.39 alm: 0.22 top: 0.50 tms: 0.07 mit: 0.19 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.04 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 1.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

20.0 %: cytoplasmic
16.0 %: nuclear
16.0 %: vesicles of secretory system
12.0 %: plasma membrane
8.0 %: Golgi
8.0 %: endoplasmic reticulum
8.0 %: mitochondrial
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for SHB703 is cyt

5' end seq. ID SHB703F
5' end seq.
>SHB703F.Seq
AAATTATTATGACTGAAAATAAATATTTAGGTGCTGCTCGTAATACTGCTGCCTCTCAAG
CCAAAGGTAAATATTTAATGTTTTTAGATGATGATAATTATATGTATCCAAATGCAATTT
CAACCTATGTTTCAATCGCTACAAATACAAATGCCAATGTTGTTAGTTCACCACATTCAA
TATTTAATTCAACCAATACTCCAATATCAAATGATGTTATTATTCAAAGACAATGGGTAC
CATTAGGTCCATCACTTTCCGTTGGTCTCTTCAAGAATTGTTTTGGTGATGCAAATTTCT
TTATTGAAAAGTCATCATTTAATTCAATTGGTGGTTTCACTGAGGAAGTTGGTGTTGGTT
TAGAAGATCATGAAATTTTGGCAAAACTTGTTATTCAAGGATTTAAACTTTCCGTTTCAA
CTGAACCATTATTATACTATAGATTCCATGATTCAGTCAATCAAATGATTTTTACAACCG
ATTCAAAATCAAATCAAATGCGTTATATTCGTCCATTCTCTGAAATCCTAANNNNNNNNN
N
Length of 5' end seq. 541
3' end seq. ID SHB703Z
3' end seq.
>SHB703Z.Seq
NNNNNNNNNNATTACAGTTCCATNAAATATTCATTTCAATCATNAATNTGATCAANCCAT
TTTCCCAAAAAACTGTTTCACTTGAACTTTTCAATGGTGGCTNTCAATTATCAATCAATG
GCNTTAAAGATCAAATTATCATTGATATGGGAAAACATTCNCCACCAAAAGATAAAGAAT
TTAAATGTGGTTGGTGGAGCTCCAATAAAAAAGAATGGTTAACAGATGGTTGTTCAACCC
ATAAAGTAGATGGTAATATTCAATGTAAATGTAACCATCTTACAGAGTTTGGTTTAATTG
AATTTGCAAAATCCTCTCAAAACATTTGGATCATTATTGGACCAGTAGTTGGTGGTGTTG
TATTTGCAGCTGCAATGGTTGGTACTGTTGTAT
Length of 3' end seq. 393
Connected seq. ID SHB703P
Connected seq.
>SHB703P.Seq
AAATTATTATGACTGAAAATAAATATTTAGGTGCTGCTCGTAATACTGCTGCCTCTCAAG
CCAAAGGTAAATATTTAATGTTTTTAGATGATGATAATTATATGTATCCAAATGCAATTT
CAACCTATGTTTCAATCGCTACAAATACAAATGCCAATGTTGTTAGTTCACCACATTCAA
TATTTAATTCAACCAATACTCCAATATCAAATGATGTTATTATTCAAAGACAATGGGTAC
CATTAGGTCCATCACTTTCCGTTGGTCTCTTCAAGAATTGTTTTGGTGATGCAAATTTCT
TTATTGAAAAGTCATCATTTAATTCAATTGGTGGTTTCACTGAGGAAGTTGGTGTTGGTT
TAGAAGATCATGAAATTTTGGCAAAACTTGTTATTCAAGGATTTAAACTTTCCGTTTCAA
CTGAACCATTATTATACTATAGATTCCATGATTCAGTCAATCAAATGATTTTTACAACCG
ATTCAAAATCAAATCAAATGCGTTATATTCGTCCATTCTCTGAAATCCTAA---------
-ATTACAGTTCCATNAAATATTCATTTCAATCATNAATNTGATCAANCCATTTTCCCAAA
AAACTGTTTCACTTGAACTTTTCAATGGTGGCTNTCAATTATCAATCAATGGCNTTAAAG
ATCAAATTATCATTGATATGGGAAAACATTCNCCACCAAAAGATAAAGAATTTAAATGTG
GTTGGTGGAGCTCCAATAAAAAAGAATGGTTAACAGATGGTTGTTCAACCCATAAAGTAG
ATGGTAATATTCAATGTAAATGTAACCATCTTACAGAGTTTGGTTTAATTGAATTTGCAA
AATCCTCTCAAAACATTTGGATCATTATTGGACCAGTAGTTGGTGGTGTTGTATTTGCAG
CTGCAATGGTTGGTACTGTTGTAT
Length of connected seq. 914
Full length Seq ID -
Full length Seq. -
Length of full length seq. -