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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHB663
Library SH
(Link to library)
Clone ID SHB663
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16313-1
Original site URL
Representative seq. ID SHB663P
(Link to Original site)
Representative DNA sequence 
>SHB663 (SHB663Q) /CSM/SH/SHB6-C/SHB663Q.Seq.d/
ACTGTTGGCCTACTGGTAAAAATAATAACAATAAAATAGATTTTTACATTTATTTTTATT
TATTTCATATTTATTTTTGTTGGAAAAAAAAGAAAAAAAAAGAAAAAAAGAAAAAAAAAA
XXXXXXXXXXACAACTGGCAGGGCTACAGGTCATTACACAGAATCAGGTACAGGTAATCC
ACATTTATGTGATAGATATCATTGTAAAAGAGGAATGGAATGTCATGTTGTTAATGGTGT
TCCAGAATGTTTACCATCAAACTACAAATGTTTAGATTGTTTAGATCTTCATTGTGAGAG
ACAAGGTGATTTCACCTGTTTTATGGTTAAAAATCCAAATTTCATTTCTAGTAAACATAG
TTGTTATGGTGAATCATGTTGTAAATTCACACC
sequence update 2002.10.25
Translated Amino Acid sequence 
CWPTGKNNNNKIDFYIYFYLFHIYFCWKKKKKKEKKKKK---

---TTGRATGHYTESGTGNPHLCDRYHCKRGMECHVVNGVPECLPSNYKCLDCLDLHCER
QGDFTCFMVKNPNFISSKHSCYGESCCKFT
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllvkiitik*iftfifiyfififvgkkrkkkkkrkkk---

---TTGRATGHYTESGTGNPHLCDRYHCKRGMECHVVNGVPECLPSNYKCLDCLDLHCER
QGDFTCFMVKNPNFISSKHSCYGESCCKFT

Frame B:
llayw*k**q*nrflhlflfisylfllekkekkrkkekk---

---qlaglqvitqnqvqvihiyvidiivkeewnvmllmvfqnvyhqttnv*iv*ifivrd
kvispvlwlkiqisflvnivvmvnhvvnsh

Frame C:
CWPTGKNNNNKIDFYIYFYLFHIYFCWKKKKKKEKKKKK---

---nwqgyrslhriryr*stfm**isl*krngmscc*wcsrmftiklqmfrlfrssl*et
r*fhlfyg*kskfhf**t*llw*iml*iht
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD478 (SSD478Q) /CSM/SS/SSD4-D/SSD478Q.Seq.d/                        521   e-147
SSA704 (SSA704Q) /CSM/SS/SSA7-A/SSA704Q.Seq.d/                        521   e-147
SLE329 (SLE329Q) /CSM/SL/SLE3-B/SLE329Q.Seq.d/                        521   e-147
SLB794 (SLB794Q) /CSM/SL/SLB7-D/SLB794Q.Seq.d/                        521   e-147
SHL803 (SHL803Q) /CSM/SH/SHL8-A/SHL803Q.Seq.d/                        521   e-147
SHL777 (SHL777Q) /CSM/SH/SHL7-D/SHL777Q.Seq.d/                        521   e-147
SHL602 (SHL602Q) /CSM/SH/SHL6-A/SHL602Q.Seq.d/                        521   e-147
SHL588 (SHL588Q) /CSM/SH/SHL5-D/SHL588Q.Seq.d/                        521   e-147
SHL457 (SHL457Q) /CSM/SH/SHL4-C/SHL457Q.Seq.d/                        521   e-147
SHL385 (SHL385Q) /CSM/SH/SHL3-D/SHL385Q.Seq.d/                        521   e-147
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY787346|AY787346.1 Astralium rhodostomum haplotype TUT1 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.    50   0.034  1
AY787329|AY787329.1 Astralium rhodostomum haplotype HAA1 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.    50   0.034  1
AY787323|AY787323.1 Astralium rhodostomum haplotype VIT5 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.    50   0.034  1
AY787322|AY787322.1 Astralium rhodostomum haplotype VIT4 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.    50   0.034  1
AY621493|AY621493.1 Apomastus kristenae isolate SJF2 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.    50   0.034  1
AY621492|AY621492.1 Apomastus kristenae isolate SJF1 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.    50   0.034  1
AY621491|AY621491.1 Apomastus kristenae isolate SJF cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.    50   0.034  1
CJ433570|CJ433570.1 Macaca fascicularis mRNA, clone: QccE-10527, 5' end, expressed in cerebellum cortex.    48   0.13   1
CJ466286|CJ466286.1 Macaca fascicularis mRNA, clone: QnpA-15637, 5' end, expressed in brain parietal lobe.    48   0.13   1
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    44   0.15   3
dna update 2005.12.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                203   1e-51
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                148   5e-35
AF245486_1(AF245486|pid:none) Polysphondylium pallidum spore coa...    45   6e-04
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    41   0.011
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    41   0.011
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    41   0.014
AB011475_1(AB011475|pid:none) Arabidopsis thaliana genomic DNA, ...    37   0.15
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...    37   0.26
T22274(T22274)hypothetical protein F46B3.9 - Caenorhabditis eleg...    35   0.59
EU969239_1(EU969239|pid:none) Zea mays clone 327364 hypothetical...    33   2.9
protein update 2009. 4.15
PSORT 

 psg: 0.78  gvh: 0.26  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.08
 nuc: 0.20  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 32.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for SHB663 is nuc
5' end seq. ID SHB663F
5' end seq. 
>SHB663F.Seq
ACTGTTGGCCTACTGGTAAAAATAATAACAATAAAATAGATTTTTACATTTATTTTTATT
TATTTCATATTTATTTTTGTTGGAAAAAAAAGAAAAAAAAAGAAAAAAAGAAAAAAAAAA
NNNNNNNNNN
Length of 5' end seq. 130
3' end seq. ID SHB663Z
3' end seq. 
>SHB663Z.Seq
NNNNNNNNNNACAACTGGCAGGGCTACAGGTCATTACACAGAATCAGGTACAGGTAATCC
ACATTTATGTGATAGATATCATTGTAAAAGAGGAATGGAATGTCATGTTGTTAATGGTGT
TCCAGAATGTTTACCATCAAACTACAAATGTTTAGATTGTTTAGATCTTCATTGTGAGAG
ACAAGGTGATTTCACCTGTTTTATGGTTAAAAATCCAAATTTCATTTCTAGTAAACATAG
TTGTTATGGTGAATCATGTTGTAAATTCACACC
Length of 3' end seq. 273
Connected seq. ID SHB663P
Connected seq. 
>SHB663P.Seq
ACTGTTGGCCTACTGGTAAAAATAATAACAATAAAATAGATTTTTACATTTATTTTTATT
TATTTCATATTTATTTTTGTTGGAAAAAAAAGAAAAAAAAAGAAAAAAAGAAAAAAAAAA
----------ACAACTGGCAGGGCTACAGGTCATTACACAGAATCAGGTACAGGTAATCC
ACATTTATGTGATAGATATCATTGTAAAAGAGGAATGGAATGTCATGTTGTTAATGGTGT
TCCAGAATGTTTACCATCAAACTACAAATGTTTAGATTGTTTAGATCTTCATTGTGAGAG
ACAAGGTGATTTCACCTGTTTTATGGTTAAAAATCCAAATTTCATTTCTAGTAAACATAG
TTGTTATGGTGAATCATGTTGTAAATTCACACC
Length of connected seq. 383
Full length Seq ID -
Full length Seq. -
Length of full length seq. -