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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHB640
Library SH
(Link to library)
Clone ID SHB640
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID SHB640P
(Link to Original site)
Representative DNA sequence 
>SHB640 (SHB640Q) /CSM/SH/SHB6-B/SHB640Q.Seq.d/
CACTGTTGGCCTACTGGNAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAATAATAG
AAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAXXXXXXXXXXGAAC
AAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATG
AGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGNTA
AATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAAT
TTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGAC
AACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCA
AAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTG
TCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATA
ATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAGACAGACAATNTCNTGACCA
AATTAAAAATCAATTAAAAAATATTCAACATGAGACAACAAATCCAAGAACANCAAGTAT
AAATTAAATCAAGAAAAAAATCNACNATTATTAGAACAAGAGACAAAATCAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
hcwptgnyfffsfflkfk**k**KLILKKRNVKKK---

---EQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAXKLQNEMDQLELLLEEN
EEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQ
ENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKTDNXXTKLKIN*kifnmrqqiq
exqv*iksrkkstiirtrdkik
Translated Amino Acid sequence (All Frames) 
Frame A:
hcwptgnyfffsfflkfk**k**KLILKKRNVKKK---

---EQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAXKLQNEMDQLELLLEEN
EEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQ
ENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKTDNXXTKLKIN*kifnmrqqiq
exqv*iksrkkstiirtrdkik

Frame B:
tvgllxtifsflsf*slnnrnnkn*y*kkgtlkkk---

---nkmplnklniynvlkmvkismsmklpnmklpf*mkmnkmlxnykmkwtn*nsylkrm
kknnfqikiynnlmrmkinnnnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfnk
rtmlst*vmlkklnlnwmlnwlkiinkrikmri*fkrrqtxs*pn*ksikkyst*dnksk
nxkyklnqeknxxlleqetksk

Frame C:
llaywxlfflfflfkv*iieiikinikkker*kk---

---trch*tsstftty*kw*ryr*v*scpt*sclfr*k*trcx*itk*ngpirtlt*re*
rrtifk*kfttt**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknstr
ercclle*c*ksst*igc*ig*k**tresr*efssredrqxxdqiknqlkniqhettnpr
txsin*ikkkixxy*nkrqnqk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHB640 (SHB640Q) /CSM/SH/SHB6-B/SHB640Q.Seq.d/                        567   e-161
SHB840 (SHB840Q) /CSM/SH/SHB8-B/SHB840Q.Seq.d/                        513   e-144
CHQ174 (CHQ174Q) /CSM/CH/CHQ1-D/CHQ174Q.Seq.d/                        504   e-141
CHJ185 (CHJ185Q) /CSM/CH/CHJ1-D/CHJ185Q.Seq.d/                        500   e-140
SHD692 (SHD692Q) /CSM/SH/SHD6-D/SHD692Q.Seq.d/                        496   e-139
SHC867 (SHC867Q) /CSM/SH/SHC8-C/SHC867Q.Seq.d/                        496   e-139
SHB543 (SHB543Q) /CSM/SH/SHB5-B/SHB543Q.Seq.d/                        496   e-139
CHJ180 (CHJ180Q) /CSM/CH/CHJ1-D/CHJ180Q.Seq.d/                        496   e-139
AHM645 (AHM645Q) /CSM/AH/AHM6-B/AHM645Q.Seq.d/                        490   e-137
VHG846 (VHG846Q) /CSM/VH/VHG8-B/VHG846Q.Seq.d/                        488   e-137
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   436   0.0    8
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   3e-25  1
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence.    36   0.027  7
AC004710|AC004710.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 2 unordered pieces.    38   0.053  6
AC125523|AC125523.4 Mus musculus chromosome 15 clone RP24-376O18, complete sequence.    40   0.18   4
DT633626|DT633626.1 EST1148557 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFW90 3' end, mRNA sequence.    48   0.25   1
DT364098|DT364098.1 JGI_ANNN9278.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN9278 3', mRNA sequence.    48   0.25   1
DT347978|DT347978.1 JGI_CAAX10802.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX10802 5', mRNA sequence.    48   0.25   1
DT309975|DT309975.1 JGI_CAAX1517.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 5', mRNA sequence.    48   0.25   1
DT309974|DT309974.1 JGI_CAAX1517.rev CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 3', mRNA sequence.    48   0.25   1
dna update 2005.12.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   169   7e-41
AF461538_1(AF461538|pid:none) Clostridium botulinum strain 62A p...    27   4.8
CP000946_2056(CP000946|pid:none) Escherichia coli ATCC 8739, com...    33   8.2
CU928161_1159(CU928161|pid:none) Escherichia coli S88 chromosome...    33   8.2
CU928145_781(CU928145|pid:none) Escherichia coli 55989 chromosom...    33   8.2
CU651637_1104(CU651637|pid:none) Escherichia coli LF82 chromosom...    33   8.2
CU928163_616(CU928163|pid:none) Escherichia coli UMN026 chromoso...    33   8.2
protein update 2009. 4.15
PSORT 

 psg: 0.36  gvh: 0.16  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for SHB640 is nuc
5' end seq. ID SHB640F
5' end seq. 
>SHB640F.Seq
CACTGTTGGCCTACTGGNAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAATAATAG
AAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 116
3' end seq. ID SHB640Z
3' end seq. 
>SHB640Z.Seq
NNNNNNNNNNGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGG
TGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGA
ACAAGATGCTGNTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAA
TGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACA
ACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACA
ACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACA
AGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGA
ATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAGACAGA
CAATNTCNTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAGACAACAAATCCA
AGAACANCAAGTATAAATTAAATCAAGAAAAAAATCNACNATTATTAGAACAAGAGACAA
AATCAAAAA
Length of 3' end seq. 609
Connected seq. ID SHB640P
Connected seq. 
>SHB640P.Seq
CACTGTTGGCCTACTGGNAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAATAATAG
AAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAA----------GAAC
AAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATG
AGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGNTA
AATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAAT
TTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGAC
AACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCA
AAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTG
TCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATA
ATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAGACAGACAATNTCNTGACCA
AATTAAAAATCAATTAAAAAATATTCAACATGAGACAACAAATCCAAGAACANCAAGTAT
AAATTAAATCAAGAAAAAAATCNACNATTATTAGAACAAGAGACAAAATCAAAAA
Length of connected seq. 705
Full length Seq ID -
Full length Seq. -
Length of full length seq. -