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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHB633
Library SH
(Link to library)
Clone ID SHB633
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12273-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SHB633 (SHB633Q) /CSM/SH/SHB6-B/SHB633Q.Seq.d/
GTCAAAGNATTATATTTTTAAAGTATTTAGATTAAATAAACGTGGTATTAAAATCATTTC
AAAATCAAGNAGCATTTGAAAATACATTAGTTAAAGAAAATAGTATAAATAGAAAATCGA
GTATAAATAATTAAAAAATTAAAAAATTAAAAATTAATAAAAATAATAATAATAATAATA
ATAATAATAATAATAATAATAATAATAATAATAATAATAATATTAATACAAATAATTTTT
TAAAAAAAAAAAANGAAAAAAAAAAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
qxiiflkyld*invvlksfqnqxafentlvkensinrkssinn*KIKKLKINKNNNNNNN
NNNNNNNNNNNNNINTNNFLKKKXEKK---
Translated Amino Acid sequence (All Frames) 
Frame A:
vkxlyf*si*ik*twy*nhfkikxhlkih*lkkiv*ienrv*iikklkn*klikiiiiii
iiiiiiiiiiiiiiliqiif*kkkxkkk---


Frame B:
skxyifkvfrlnkrgikiisksxsi*kyis*rk*yk*kieyk*lkn*kikn**k******
*************y*yk*ffkkkkxkk---


Frame C:
qxiiflkyld*invvlksfqnqxafentlvkensinrkssinn*KIKKLKINKNNNNNNN
NNNNNNNNNNNNNINTNNFLKKKXEKK---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHB633 (SHB633Q) /CSM/SH/SHB6-B/SHB633Q.Seq.d/                        178   3e-44
VSA558 (VSA558Q) /CSM/VS/VSA5-C/VSA558Q.Seq.d/                         38   0.066
SLK887 (SLK887Q) /CSM/SL/SLK8-D/SLK887Q.Seq.d/                         38   0.066
SLK648 (SLK648Q) /CSM/SL/SLK6-B/SLK648Q.Seq.d/                         38   0.066
SLK560 (SLK560Q) /CSM/SL/SLK5-C/SLK560Q.Seq.d/                         38   0.066
SLJ765 (SLJ765Q) /CSM/SL/SLJ7-C/SLJ765Q.Seq.d/                         38   0.066
SLJ720 (SLJ720Q) /CSM/SL/SLJ7-A/SLJ720Q.Seq.d/                         38   0.066
SLJ631 (SLJ631Q) /CSM/SL/SLJ6-B/SLJ631Q.Seq.d/                         38   0.066
SLJ129 (SLJ129Q) /CSM/SL/SLJ1-B/SLJ129Q.Seq.d/                         38   0.066
SLI767 (SLI767Q) /CSM/SL/SLI7-C/SLI767Q.Seq.d/                         38   0.066
own update 2004. 8.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL248736|AL248736.1 Tetraodon nigroviridis genome survey sequence T7 end of clone 034M14of library G from Tetraodon nigroviridis.    48   0.092  1
AP001948|AP001948.2 Homo sapiens genomic DNA, chromosome 4q22-q24, clone:2243F22, WORKING DRAFT SEQUENCE, unordered pieces.    46   0.36   1
CZ455825|CZ455825.1 MCF738H13TR Human MCF7 breast cancer cell line library (MCF7_1) Homo sapiens genomic clone MCF7_38_H13, genomic survey sequence.    46   0.36   1
AC093729|AC093729.2 Homo sapiens BAC clone RP11-11N6 from 4, complete sequence.    46   0.36   1
BZ399502|BZ399502.1 EINCN04TF EI_10_12_KB Entamoeba invadens genomic clone EINCN04, DNA sequence.    40   1.3    2
DV320266|DV320266.1 NABRB33TF Aedes aegypti infected with Plasmodium gallinaceum Aedes aegypti cDNA clone NABRB33, mRNA sequence.    44   1.4    1
DV427212|DV427212.1 NADX646TF Aedes aegypti infected with Dengue virus Pool library Aedes aegypti cDNA clone NADX646, mRNA sequence.    44   1.4    1
DV314546|DV314546.1 NABOO34TF Aedes aegypti infected with Brugia Malayi Aedes aegypti cDNA clone NABOO34, mRNA sequence.    44   1.4    1
DV396885|DV396885.1 NADE310TR Aedes aegypti infected with Dengue virus Pool library Aedes aegypti cDNA clone NADE310, mRNA sequence.    44   1.4    1
DV312022|DV312022.1 NABOR89TRB Aedes aegypti infected with Brugia Malayi Aedes aegypti cDNA clone NABOR89, mRNA sequence.    44   1.4    1
dna update 2005.12.26
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 92,894,659
protein update 2009. 4.15
PSORT 

 psg: 0.44  gvh: -0.19  alm: 0.91  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 24.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial

>> prediction for SHB633 is nuc
5' end seq. ID SHB633F
5' end seq. 
>SHB633F.Seq
GTCAAAGNATTATATTTTTAAAGTATTTAGATTAAATAAACGTGGTATTAAAATCATTTC
AAAATCAAGNAGCATTTGAAAATACATTAGTTAAAGAAAATAGTATAAATAGAAAATCGA
GTATAAATAATTAAAAAATTAAAAAATTAAAAATTAATAAAAATAATAATAATAATAATA
ATAATAATAATAATAATAATAATAATAATAATAATAATAATATTAATACAAATAATTTTT
TAAAAAAAAAAAANGAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 275
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -