SHB615
Library SH
(Link to library)
Clone ID SHB615
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12039-1
Original site URL
Representative seq. ID SHB615P
(Link to Original site)
Representative DNA sequence
>SHB615 (SHB615Q) /CSM/SH/SHB6-A/SHB615Q.Seq.d/
CTGTTGGCCTACTGGNAAAATGAAACAACGGGNAACAACGACTGGNAACTGCTGGATCTT
CAGTTAATCCATTATCATTTAGTAGTAATAGTATATTGGTTCAACAAAAGAGATTAAGTA
GAAGTTTACAAAGTTTCAATGAAATTAATCATCATTATTCTTCATCTTATCATGAACCAA
TCATTTATAGTTCAAGTTTAAATCAATATAATGGTATTAATATAGGTAGTGGTACACCAA
CAACAACTAGTGGTGATAATACACCATTAACAAATACTGCTACCTCTTCAACTGTTAGTA
GTTATAGTGAACCAAGTTTAATTTCTTCACAAAATCAATTACCACTTTCACAACAACCAC
AACCACAACCACAACAACAACAACAATTAAATGATAGTTCTTCATTCCCAACTAGTCCAA
TCTCTAGTAGAAATGATTTAATTAGTTCAAATTCTTCAATTTATGAACCACCATTATCAG
ATGTTGCATCACAATTAATTGAACAACAACAAGAGCAACAGCAACAACAACATCAAGAAC
AACCATTACAACCACAACAACAACAACAACAACAACCACAACCACAACCAATATCAACAT
TAGTATTTGATAAAGCAAATCAAAGATCATCATCACCAAXXXXXXXXXXAAAGAATACTT
TGAAAACTCCATTAAAGAAACCAGTTAAAAAAGTCGTTGGTACACCAGATTATTTAAGTC
CAGAGATTCTTTTAGGTACAGGTCATGGTCAAACAGTTGATTGGTGGGCATTGGGTATTA
TTTTATATGAATTTTTAACAGGTTCACCACCATTTAATGATGATACACCAGAGTTAATCT
TTCAACATATTTTACATCGTGATCGTGAAATGGAATGGCCAGAAGAGATTTCATCAGAGG
CAAAAGATTTAATACTTAAACTTTTAAATCCAGATCCATACAAAAGATTAGGTGCTAATG
GTGCTTATGAAGTTAAAACTCATCCATTCTTTGCAAATGTTAATTGGGATACTCTTATTG
ATCAAGAAATGGATAATATATTCTTACCAAAACCTGAAAATAATTATGATACTGATTATT
TTTGGGATAGACAATCAATGTATGATGATGAAGCTGAAGATGATTTTTTAACTATAAATC
AATCACAACCTCAACACCAATCTCAACATCAATCTCAACCTCAATCTCAACCTCAACCTC
AATCTCAAAATTTAGGTCAAAATAATAATAACAGTGAAAGTAATAATAATAATAATAATA
GTAATAGTAATGTTAGTGGTCAAAATATCAATAATAGTGTCAGCAGCAGCAGCAATAATA
ATGGTAGGGTATTTAAATAATATTGTAATAATAGTAATGTTAAT
sequence update 2002.10.25
Translated Amino Acid sequence
vgllxk*NNGXQRLXTAGSSVNPLSFSSNSILVQQKRLSRSLQSFNEINHHYSSSYHEPI
IYSSSLNQYNGINIGSGTPTTTSGDNTPLTNTATSSTVSSYSEPSLISSQNQLPLSQQPQ
PQPQQQQQLNDSSSFPTSPISSRNDLISSNSSIYEPPLSDVASQLIEQQQEQQQQQHQEQ
PLQPQQQQQQQPQPQPISTLVFDKANQRSSSP---

---KNTLKTPLKKPVKKVVGTPDYLSPEILLGTGHGQTVDWWALGIILYEFLTGSPPFND
DTPELIFQHILHRDREMEWPEEISSEAKDLILKLLNPDPYKRLGANGAYEVKTHPFFANV
NWDTLIDQEMDNIFLPKPENNYDTDYFWDRQSMYDDEAEDDFLTINQSQPQHQSQHQSQP
QSQPQPQSQNLGQNNNNSESNNNNNNSNSNVSGQNINNSVSSSSNNNGRVFK*ycnnsnv
n


Translated Amino Acid sequence (All Frames)
Frame A:
llaywxnettgnndwxlldlqlihyhlvvivywfnkrd*vevykvsmkliiiilhlimnq
sfivqv*inimvli*vvvhqqqlvviihh*qillplqllvvivnqv*flhkinyhfhnnh
nhnhnnnnn*mivlhsqlvqslvemi*lvqilqfmnhhyqmlhhn*lnnnksnsnnnikn
nhynhnnnnnnnhnhnqyqh*ylikqikdhhhq---

---keyfensikets*ksrwytrlfksrdsfryrswsns*lvgigyyfi*ifnrftti**
*ytrvnlstyfts*s*ngmarrdfirgkrfnt*tfksrsiqkirc*wcl*s*nssilckc
*lgysy*srng*yiltkt*k*l*y*lflg*tinv***s*r*ffnyksittstpistsist
siststsiskfrsk***q*k**********c*wskyq**cqqqqq**w*gi*iil****c
*

Frame B:
cwptgkmkqrxtttgncwifs*siii****yigstkeik*kftkfq*n*sslffils*tn
hl*fkfksi*wy*yr*wytnnn*w**ytinkycylfnc**l**tkfnfftksittftttt
ttttttttik**ffipn*snl**k*fn*fkffnl*ttiirccitin*tttratatttsrt
tittttttttttttttninisi**skskiiit---

---KNTLKTPLKKPVKKVVGTPDYLSPEILLGTGHGQTVDWWALGIILYEFLTGSPPFND
DTPELIFQHILHRDREMEWPEEISSEAKDLILKLLNPDPYKRLGANGAYEVKTHPFFANV
NWDTLIDQEMDNIFLPKPENNYDTDYFWDRQSMYDDEAEDDFLTINQSQPQHQSQHQSQP
QSQPQPQSQNLGQNNNNSESNNNNNNSNSNVSGQNINNSVSSSSNNNGRVFK*ycnnsnv
n

Frame C:
vgllxk*NNGXQRLXTAGSSVNPLSFSSNSILVQQKRLSRSLQSFNEINHHYSSSYHEPI
IYSSSLNQYNGINIGSGTPTTTSGDNTPLTNTATSSTVSSYSEPSLISSQNQLPLSQQPQ
PQPQQQQQLNDSSSFPTSPISSRNDLISSNSSIYEPPLSDVASQLIEQQQEQQQQQHQEQ
PLQPQQQQQQQPQPQPISTLVFDKANQRSSSP---

---ril*klh*rnqlkkslvhqii*vqrff*vqvmvkqligghwvlfymnf*qvhhhlmm
ihqs*sfnifyivivkwngqkrfhqrqki*ylnf*iqihtkd*vlmvlmklklihslqml
igilllikkwiiysyqnlkiimiliifgidnqcmmmklkmif*l*inhnlntnlninlnl
nlnlnlnlki*vkiiitvkviiiiiivivmlvvkisiivsaaaaiimvgylnniviivml

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHB615 (SHB615Q) /CSM/SH/SHB6-A/SHB615Q.Seq.d/ 1059 0.0
SHK448 (SHK448Q) /CSM/SH/SHK4-B/SHK448Q.Seq.d/ 959 0.0
SSM622 (SSM622Q) /CSM/SS/SSM6-A/SSM622Q.Seq.d/ 66 2e-09
SHJ555 (SHJ555Q) /CSM/SH/SHJ5-C/SHJ555Q.Seq.d/ 66 2e-09
SFI863 (SFI863Q) /CSM/SF/SFI8-C/SFI863Q.Seq.d/ 66 2e-09
SFI763 (SFI763Q) /CSM/SF/SFI7-C/SFI763Q.Seq.d/ 66 2e-09
SFI481 (SFI481Q) /CSM/SF/SFI4-D/SFI481Q.Seq.d/ 66 2e-09
SFF428 (SFF428Q) /CSM/SF/SFF4-B/SFF428Q.Seq.d/ 66 2e-09
SFF162 (SFF162Q) /CSM/SF/SFF1-C/SFF162Q.Seq.d/ 66 2e-09
SFC551 (SFC551Q) /CSM/SF/SFC5-C/SFC551Q.Seq.d/ 66 2e-09

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 1003 0.0 8
AZ927331|AZ927331.1 476.dis74e01.s1 Saccharomyces castellii NRRL Y-12630 Saccharomyces castellii genomic clone 476.dis74e01.s1, DNA sequence. 44 2e-07 3
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 52 4e-06 10
AF020280|AF020280.1 Dictyostelium discoideum PkgA (pkgA) gene, partial cds. 44 2e-05 2
AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence. 46 5e-05 11
CP000033|CP000033.1 Lactobacillus acidophilus NCFM, complete genome. 38 0.005 2
AZ927694|AZ927694.1 476.dit28b10.s1 Saccharomyces castellii NRRL Y-12630 Saccharomyces castellii genomic clone 476.dit28b10.s1, DNA sequence. 44 0.007 2
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 34 0.008 15
CJ459129|CJ459129.1 Macaca fascicularis mRNA, clone: QmoA-11260, 5' end, expressed in medulla oblongata. 46 0.039 2
CJ450274|CJ450274.1 Macaca fascicularis mRNA, clone: QflA-15826, 5' end, expressed in brain frontal lobe. 46 0.042 2
dna update 2005.12.26
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116963_26(AC116963|pid:none) Dictyostelium discoideum chromoso... 309 2e-82
AF385743_1(AF385743|pid:none) Arabidopsis thaliana At1g48490/T1N... 155 4e-36
AP008209_2418(AP008209|pid:none) Oryza sativa (japonica cultivar... 150 7e-35
AC116979_80(AC116979|pid:none) Dictyostelium discoideum chromoso... 150 1e-34
BT067264_1(BT067264|pid:none) Zea mays full-length cDNA clone ZM... 148 5e-34
EU953572_1(EU953572|pid:none) Zea mays clone 1436272 unknown mRNA. 148 5e-34
AC020889_10(AC020889|pid:none) Genomic sequence for Arabidopsis ... 147 1e-33
AP008218_1393(AP008218|pid:none) Oryza sativa (japonica cultivar... 147 1e-33
AB037134_1(AB037134|pid:none) Arabidopsis thaliana IREH1 gene fo... 144 5e-33
AB019230_7(AB019230|pid:none) Arabidopsis thaliana genomic DNA, ... 144 5e-33
protein update 2009. 4.15
PSORT

psg: 0.86 gvh: 0.49 alm: 0.45 top: 0.57 tms: 0.00 mit: 0.53 mip: 0.07
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

80.0 %: mitochondrial
12.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: cytoplasmic

>> prediction for SHB615 is mit

5' end seq. ID SHB615F
5' end seq.
>SHB615F.Seq
CTGTTGGCCTACTGGNAAAATGAAACAACGGGNAACAACGACTGGNAACTGCTGGATCTT
CAGTTAATCCATTATCATTTAGTAGTAATAGTATATTGGTTCAACAAAAGAGATTAAGTA
GAAGTTTACAAAGTTTCAATGAAATTAATCATCATTATTCTTCATCTTATCATGAACCAA
TCATTTATAGTTCAAGTTTAAATCAATATAATGGTATTAATATAGGTAGTGGTACACCAA
CAACAACTAGTGGTGATAATACACCATTAACAAATACTGCTACCTCTTCAACTGTTAGTA
GTTATAGTGAACCAAGTTTAATTTCTTCACAAAATCAATTACCACTTTCACAACAACCAC
AACCACAACCACAACAACAACAACAATTAAATGATAGTTCTTCATTCCCAACTAGTCCAA
TCTCTAGTAGAAATGATTTAATTAGTTCAAATTCTTCAATTTATGAACCACCATTATCAG
ATGTTGCATCACAATTAATTGAACAACAACAAGAGCAACAGCAACAACAACATCAAGAAC
AACCATTACAACCACAACAACAACAACAACAACAACCACAACCACAACCAATATCAACAT
TAGTATTTGATAAAGCAAATCAAAGATCATCATCACCAANNNNNNNNNN
Length of 5' end seq. 649
3' end seq. ID SHB615Z
3' end seq.
>SHB615Z.Seq
NNNNNNNNNNAAAGAATACTTTGAAAACTCCATTAAAGAAACCAGTTAAAAAAGTCGTTG
GTACACCAGATTATTTAAGTCCAGAGATTCTTTTAGGTACAGGTCATGGTCAAACAGTTG
ATTGGTGGGCATTGGGTATTATTTTATATGAATTTTTAACAGGTTCACCACCATTTAATG
ATGATACACCAGAGTTAATCTTTCAACATATTTTACATCGTGATCGTGAAATGGAATGGC
CAGAAGAGATTTCATCAGAGGCAAAAGATTTAATACTTAAACTTTTAAATCCAGATCCAT
ACAAAAGATTAGGTGCTAATGGTGCTTATGAAGTTAAAACTCATCCATTCTTTGCAAATG
TTAATTGGGATACTCTTATTGATCAAGAAATGGATAATATATTCTTACCAAAACCTGAAA
ATAATTATGATACTGATTATTTTTGGGATAGACAATCAATGTATGATGATGAAGCTGAAG
ATGATTTTTTAACTATAAATCAATCACAACCTCAACACCAATCTCAACATCAATCTCAAC
CTCAATCTCAACCTCAACCTCAATCTCAAAATTTAGGTCAAAATAATAATAACAGTGAAA
GTAATAATAATAATAATAATAGTAATAGTAATGTTAGTGGTCAAAATATCAATAATAGTG
TCAGCAGCAGCAGCAATAATAATGGTAGGGTATTTAAATAATATTGTAATAATAGTAATG
TTAAT
Length of 3' end seq. 725
Connected seq. ID SHB615P
Connected seq.
>SHB615P.Seq
CTGTTGGCCTACTGGNAAAATGAAACAACGGGNAACAACGACTGGNAACTGCTGGATCTT
CAGTTAATCCATTATCATTTAGTAGTAATAGTATATTGGTTCAACAAAAGAGATTAAGTA
GAAGTTTACAAAGTTTCAATGAAATTAATCATCATTATTCTTCATCTTATCATGAACCAA
TCATTTATAGTTCAAGTTTAAATCAATATAATGGTATTAATATAGGTAGTGGTACACCAA
CAACAACTAGTGGTGATAATACACCATTAACAAATACTGCTACCTCTTCAACTGTTAGTA
GTTATAGTGAACCAAGTTTAATTTCTTCACAAAATCAATTACCACTTTCACAACAACCAC
AACCACAACCACAACAACAACAACAATTAAATGATAGTTCTTCATTCCCAACTAGTCCAA
TCTCTAGTAGAAATGATTTAATTAGTTCAAATTCTTCAATTTATGAACCACCATTATCAG
ATGTTGCATCACAATTAATTGAACAACAACAAGAGCAACAGCAACAACAACATCAAGAAC
AACCATTACAACCACAACAACAACAACAACAACAACCACAACCACAACCAATATCAACAT
TAGTATTTGATAAAGCAAATCAAAGATCATCATCACCAA----------AAAGAATACTT
TGAAAACTCCATTAAAGAAACCAGTTAAAAAAGTCGTTGGTACACCAGATTATTTAAGTC
CAGAGATTCTTTTAGGTACAGGTCATGGTCAAACAGTTGATTGGTGGGCATTGGGTATTA
TTTTATATGAATTTTTAACAGGTTCACCACCATTTAATGATGATACACCAGAGTTAATCT
TTCAACATATTTTACATCGTGATCGTGAAATGGAATGGCCAGAAGAGATTTCATCAGAGG
CAAAAGATTTAATACTTAAACTTTTAAATCCAGATCCATACAAAAGATTAGGTGCTAATG
GTGCTTATGAAGTTAAAACTCATCCATTCTTTGCAAATGTTAATTGGGATACTCTTATTG
ATCAAGAAATGGATAATATATTCTTACCAAAACCTGAAAATAATTATGATACTGATTATT
TTTGGGATAGACAATCAATGTATGATGATGAAGCTGAAGATGATTTTTTAACTATAAATC
AATCACAACCTCAACACCAATCTCAACATCAATCTCAACCTCAATCTCAACCTCAACCTC
AATCTCAAAATTTAGGTCAAAATAATAATAACAGTGAAAGTAATAATAATAATAATAATA
GTAATAGTAATGTTAGTGGTCAAAATATCAATAATAGTGTCAGCAGCAGCAGCAATAATA
ATGGTAGGGTATTTAAATAATATTGTAATAATAGTAATGTTAAT
Length of connected seq. 1354
Full length Seq ID -
Full length Seq. -
Length of full length seq. -