>SHB614 (SHB614Q) /CSM/SH/SHB6-A/SHB614Q.Seq.d/
CCTTTGGGAATTAAAACCAACAATAGCAATAATAATTATAATAATAATAAATAATAATAA
TAATAATAACAATAAAATAGTAACACCAATAAATAATAATATTAATAATAATAATAATAA
TAATAATAATAATAATAAAATAAAAAATATAATAATAATAATAGTAATAATAGTAATAAT
AATAATAAAATAATAATAATAGAAATAATTTCAATTTAAAAAATAAATAAAATAAAAAAG
AGGAAAAAATAAAAAAAAAAATAANTTTTTTTTTTTAAAAAATTAAAATTTTAAAAAAAA
AAXXXXXXXXXX

LWELKPTIAIIIIIIINNNNNNNNKIVTPINNNINNNNNNNNNNNKIKNIIIIIVIIVII
IIK****k*fqfkk*ik*krgknkkknxffflkn*nfkkk---

Frame A:
plgiktnnsnnnynnnk******q*nsntnk**y************nkkynnnnsnnsnn
nnkiiiieiisi*kinkikkrkk*kkk*xfffkklkf*kk---


Frame B:
LWELKPTIAIIIIIIINNNNNNNNKIVTPINNNINNNNNNNNNNNKIKNIIIIIVIIVII
IIK****k*fqfkk*ik*krgknkkknxffflkn*nfkkk---


Frame C:
fgn*nqq*q**l****iiiiiitik**hq*iiiliiiiiiiiiiik*ki***********
**nnnnrnnfnlknk*nkkeekikkkixfff*kikilkk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHB614 (SHB614Q) /CSM/SH/SHB6-A/SHB614Q.Seq.d/                         54   1e-06
SHK145 (SHK145Q) /CSM/SH/SHK1-B/SHK145Q.Seq.d/                         40   0.019
SHB855 (SHB855Q) /CSM/SH/SHB8-C/SHB855Q.Seq.d/                         40   0.019
SHB434 (SHB434Q) /CSM/SH/SHB4-B/SHB434Q.Seq.d/                         40   0.019
SHF346 (SHF346Q) /CSM/SH/SHF3-B/SHF346Q.Seq.d/                         38   0.076
SHF230 (SHF230Q) /CSM/SH/SHF2-B/SHF230Q.Seq.d/                         38   0.076
CHH116 (CHH116Q) /CSM/CH/CHH1-A/CHH116Q.Seq.d/                         38   0.076
AHC677 (AHC677Q) /CSM/AH/AHC6-D/AHC677Q.Seq.d/                         38   0.076
AFJ615 (AFJ615Q) /CSM/AF/AFJ6-A/AFJ615Q.Seq.d/                         38   0.076

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AM032215|AM032215.1 Bos sp. 3' EST, clone C0007407m10.             42   6.5    1
DT900859|DT900859.1 1480000 MARC 7BOV Bos taurus cDNA 5', mRNA sequence.    42   6.5    1
DT894061|DT894061.1 1476640 MARC 7BOV Bos taurus cDNA 3', mRNA sequence.    42   6.5    1
BG691555|BG691555.1 340768 BARC 5BOV Bos taurus cDNA 5', mRNA sequence.    42   6.5    1
AV616770|AV616770.1 Bos taurus cDNA clone:E1OV007C09, 5' end, expressed in ovary.    42   6.5    1
DN513694|DN513694.1 1250673 MARC 7BOV Bos taurus cDNA 3', mRNA sequence.    42   6.5    1
CK976866|CK976866.1 4108005 BARC 9BOV Bos taurus cDNA clone 9BOV34_M20 5', mRNA sequence.    42   6.5    1
CK956365|CK956365.1 4096609 BARC 10BOV Bos taurus cDNA clone 10BOV36_B24 3', mRNA sequence.    42   6.5    1
AC160255|AC160255.2 Bos taurus clone CH240-91B5, *** SEQUENCING IN PROGRESS ***, 43 unordered pieces.    42   6.5    1
CB442864|CB442864.1 693700 MARC 6BOV Bos taurus cDNA 3', mRNA sequence.    42   6.5    1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 35,124,655

 psg: 1.00  gvh: 0.20  alm: 0.13  top: 0.53  tms: 0.13  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: plasma membrane
	 28.0 %: endoplasmic reticulum
	 16.0 %: mitochondrial
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: cytoplasmic
	  4.0 %: nuclear
	  4.0 %: vesicles of secretory system

>> prediction for SHB614 is pla

>SHB614F.Seq
CCTTTGGGAATTAAAACCAACAATAGCAATAATAATTATAATAATAATAAATAATAATAA
TAATAATAACAATAAAATAGTAACACCAATAAATAATAATATTAATAATAATAATAATAA
TAATAATAATAATAATAAAATAAAAAATATAATAATAATAATAGTAATAATAGTAATAAT
AATAATAAAATAATAATAATAGAAATAATTTCAATTTAAAAAATAAATAAAATAAAAAAG
AGGAAAAAATAAAAAAAAAAATAANTTTTTTTTTTTAAAAAATTAAAATTTTAAAAAAAA
AANNNNNNNNNN