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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHB573
Library SH
(Link to library)
Clone ID SHB573
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U13024-1|Contig-U16345-1
Original site URL
Representative seq. ID SHB573P
(Link to Original site)
Representative DNA sequence 
>SHB573 (SHB573Q) /CSM/SH/SHB5-D/SHB573Q.Seq.d/
ACTGTTGGCCTACTGGGTACTGTAACACTTGATGGAAACTTCTTGTGGTAAATGCCAATT
GGAGTCAATGATTTCATCATTAGCTGGTGGTGCTTTAANCTCACTTGATGATGTTGTTAT
CAAAGGTGTCCCAAATGCTGTCTACACAATCGCAAAACCANTTCTCTGTCGNGCAATGAA
TATTACAAGTGGTACTGTCAATTTAGCATCAACTATTGATTTAAGAGGTAACTTATGGAT
TGCATCAGGTGCAAGCATGATCATCACTGGTGCCATTAAAAGTGTTTCCAATGTTTTXXX
XXXXXXXACATTGTTGGTAACGTTAAAATGGCCGCAACTGCAACTGTCTATGCAAACATT
GATGCTTTAATGTCAATCACCACNTCAACCCAAACATCAATNTNTCAATCATCAACCAAG
ACTGTCAACGGTAAGACCACCACTCAATCATCATCAAGCTCATCATCATCCATNTATAAA
CAATTCGTTCCAATGATCGTTTGTTCAGGTACTGNTGATGTTGCTGGTAACCTCAATGTC
GTTGCNTCAGAAGCCAATCAAGNTAAAATTGCNTNTGGTACTGTATTCAAATTCATNTCA
GCCCCAGTTGTTAAAGGTAATGCCTCNTCAGTTAGCTGTCTCACCTCAAGCACTGCTGCT
GCTGCTCAACAAGCTGCCGGTGCTGCTGCTGCTGCTGCCCAAAAAGCTGCTATGGCTGCT
GCCTATAAAGTTTGGTCAATTGTAAATTCACCATGTAACTGTGAATGTGGATTGAAGAGA
TTATAAATTGATTCAACTCNTCNTCTCCAATGACAATAAATTAAAATAATACAACTCATT
CTTATTTTTCTTTATTCTAACCAATGTATTTGTCAATTAACTTATTAACTTTTTAAACAC
ACCCTTTTCAATTTTAAAACAATAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
llaywvl*HLMETSCGKCQLESMISSLAGGALXSLDDVVIKGVPNAVYTIAKPXLCRAMN
ITSGTVNLASTIDLRGNLWIASGASMIITGAIKSVSNV---

---IVGNVKMAATATVYANIDALMSITTSTQTSXXQSSTKTVNGKTTTQSSSSSSSSXYK
QFVPMIVCSGTXDVAGNLNVVASEANQXKIAXGTVFKFXSAPVVKGNASSVSCLTSSTAA
AAQQAAGAAAAAAQKAAMAAAYKVWSIVNSPCNCECGLKRL*idstxxlq*q*ikiiqli
liflysnqcicqlty*lfkhtlfnfktik
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllgtvtldgnflw*mpigvndfiiswwcfxlt**ccyqrcpkcclhnrktxslsxne
yykwycqfsiny*fkr*lmdcirckhdhhwch*kcfqcf---

---tllvtlkwpqlqlsmqtlml*cqspxqpkhqxxnhqprlstvrpplnhhqahhhpxi
nnsfq*sfvqvlxmllvtsmslxqkpikxklxxvlysnsxqpqllkvmpxqlavspqall
lllnklpvlllllpkkllwllpikfgql*ihhvtvnvd*rdykliqlxxsndnklk*yns
flfffiltnvfvn*linflntpfsilkq*k

Frame B:
llaywvl*HLMETSCGKCQLESMISSLAGGALXSLDDVVIKGVPNAVYTIAKPXLCRAMN
ITSGTVNLASTIDLRGNLWIASGASMIITGAIKSVSNV---

---hcw*r*ngrncnclckh*cfnvnhhxnpninxsiinqdcqr*dhhsiiikliiihx*
tirsndrlfryx*ccw*pqcrcxrsqsx*ncxwyciqihxspsc*r*clxs*lshlkhcc
ccstscrccccccpkscygccl*slvnckftm*l*mwieeiin*fnssspmtin*nntth
syfslf*pmylsinlltf*thpfqf*nnk

Frame C:
cwptgycnt*wkllvvnanwsq*fhh*lvvl*xhlmmllskvsqmlstqsqnxfsvxq*i
lqvvlsi*hqlli*evtyglhqvqa*sslvplkvfpmf---

---IVGNVKMAATATVYANIDALMSITTSTQTSXXQSSTKTVNGKTTTQSSSSSSSSXYK
QFVPMIVCSGTXDVAGNLNVVASEANQXKIAXGTVFKFXSAPVVKGNASSVSCLTSSTAA
AAQQAAGAAAAAAQKAAMAAAYKVWSIVNSPCNCECGLKRL*idstxxlq*q*ikiiqli
liflysnqcicqlty*lfkhtlfnfktik
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHB573 (SHB573Q) /CSM/SH/SHB5-D/SHB573Q.Seq.d/                       1148   0.0
SHF737 (SHF737Q) /CSM/SH/SHF7-B/SHF737Q.Seq.d/                        595   e-169
SLH545 (SLH545Q) /CSM/SL/SLH5-B/SLH545Q.Seq.d/                        593   e-168
SLE412 (SLE412Q) /CSM/SL/SLE4-A/SLE412Q.Seq.d/                        593   e-168
SLE342 (SLE342Q) /CSM/SL/SLE3-B/SLE342Q.Seq.d/                        593   e-168
SLE320 (SLE320Q) /CSM/SL/SLE3-A/SLE320Q.Seq.d/                        593   e-168
SLE216 (SLE216Q) /CSM/SL/SLE2-A/SLE216Q.Seq.d/                        593   e-168
SLB147 (SLB147Q) /CSM/SL/SLB1-B/SLB147Q.Seq.d/                        593   e-168
SLA427 (SLA427Q) /CSM/SL/SLA4-B/SLA427Q.Seq.d/                        593   e-168
SLA101 (SLA101Q) /CSM/SL/SLA1-A/SLA101Q.Seq.d/                        593   e-168
own update 2005. 1. 1
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U83087|U83087.1 Dictyostelium discoideum rsc12 mRNA, partial cds.   593   0.0    2
AJ297856|AJ297856.1 Lucilia sericata partial bcd gene for bicoid protein.    50   0.083  1
CJ455595|CJ455595.1 Macaca fascicularis mRNA, clone: QflA-21383, 5' end, expressed in brain frontal lobe.    34   0.13   3
AX344185|AX344185.1 Sequence 32 from Patent WO0200926.             40   0.16   4
AX251781|AX251781.1 Sequence 42 from Patent WO0168911.             40   0.16   4
BD460245|BD460245.1 Diagnosis of Diseases Associated with Cell Cycle.    40   0.16   4
BD452167|BD452167.1 Diagnosis of Diseases Associated with Cell Cycle.    40   0.16   4
CZ945208|CZ945208.1 310727 Tomato EcoRI BAC Library Lycopersicon esculentum genomic clone SL_EcoRI0018F09 3, genomic survey sequence.    38   0.32   2
AC162431|AC162431.1 Papio hamadryas clone RP41-121N17, WORKING DRAFT SEQUENCE.    48   0.33   1
AC156169|AC156169.2 Bos taurus clone CH240-50N13, *** SEQUENCING IN PROGRESS ***, 60 unordered pieces.    48   0.33   1
dna update 2005.12.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U83087_1(U83087|pid:none) Dictyostelium discoideum rsc12 mRNA, p...   187   4e-46
AJ291489_1(AJ291489|pid:none) Paracentrotus lividus mRNA for fib...    33   9.9
protein update 2008.11.13
PSORT 

 psg: 0.76  gvh: 0.50  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: peroxisomal

>> prediction for SHB573 is cyt
5' end seq. ID SHB573F
5' end seq. 
>SHB573F.Seq
ACTGTTGGCCTACTGGGTACTGTAACACTTGATGGAAACTTCTTGTGGTAAATGCCAATT
GGAGTCAATGATTTCATCATTAGCTGGTGGTGCTTTAANCTCACTTGATGATGTTGTTAT
CAAAGGTGTCCCAAATGCTGTCTACACAATCGCAAAACCANTTCTCTGTCGNGCAATGAA
TATTACAAGTGGTACTGTCAATTTAGCATCAACTATTGATTTAAGAGGTAACTTATGGAT
TGCATCAGGTGCAAGCATGATCATCACTGGTGCCATTAAAAGTGTTTCCAATGTTTTNNN
NNNNNNN
Length of 5' end seq. 307
3' end seq. ID SHB573Z
3' end seq. 
>SHB573Z.Seq
NNNNNNNNNNACATTGTTGGTAACGTTAAAATGGCCGCAACTGCAACTGTCTATGCAAAC
ATTGATGCTTTAATGTCAATCACCACNTCAACCCAAACATCAATNTNTCAATCATCAACC
AAGACTGTCAACGGTAAGACCACCACTCAATCATCATCAAGCTCATCATCATCCATNTAT
AAACAATTCGTTCCAATGATCGTTTGTTCAGGTACTGNTGATGTTGCTGGTAACCTCAAT
GTCGTTGCNTCAGAAGCCAATCAAGNTAAAATTGCNTNTGGTACTGTATTCAAATTCATN
TCAGCCCCAGTTGTTAAAGGTAATGCCTCNTCAGTTAGCTGTCTCACCTCAAGCACTGCT
GCTGCTGCTCAACAAGCTGCCGGTGCTGCTGCTGCTGCTGCCCAAAAAGCTGCTATGGCT
GCTGCCTATAAAGTTTGGTCAATTGTAAATTCACCATGTAACTGTGAATGTGGATTGAAG
AGATTATAAATTGATTCAACTCNTCNTCTCCAATGACAATAAATTAAAATAATACAACTC
ATTCTTATTTTTCTTTATTCTAACCAATGTATTTGTCAATTAACTTATTAACTTTTTAAA
CACACCCTTTTCAATTTTAAAACAATAAAAA
Length of 3' end seq. 631
Connected seq. ID SHB573P
Connected seq. 
>SHB573P.Seq
ACTGTTGGCCTACTGGGTACTGTAACACTTGATGGAAACTTCTTGTGGTAAATGCCAATT
GGAGTCAATGATTTCATCATTAGCTGGTGGTGCTTTAANCTCACTTGATGATGTTGTTAT
CAAAGGTGTCCCAAATGCTGTCTACACAATCGCAAAACCANTTCTCTGTCGNGCAATGAA
TATTACAAGTGGTACTGTCAATTTAGCATCAACTATTGATTTAAGAGGTAACTTATGGAT
TGCATCAGGTGCAAGCATGATCATCACTGGTGCCATTAAAAGTGTTTCCAATGTTTT---
-------ACATTGTTGGTAACGTTAAAATGGCCGCAACTGCAACTGTCTATGCAAACATT
GATGCTTTAATGTCAATCACCACNTCAACCCAAACATCAATNTNTCAATCATCAACCAAG
ACTGTCAACGGTAAGACCACCACTCAATCATCATCAAGCTCATCATCATCCATNTATAAA
CAATTCGTTCCAATGATCGTTTGTTCAGGTACTGNTGATGTTGCTGGTAACCTCAATGTC
GTTGCNTCAGAAGCCAATCAAGNTAAAATTGCNTNTGGTACTGTATTCAAATTCATNTCA
GCCCCAGTTGTTAAAGGTAATGCCTCNTCAGTTAGCTGTCTCACCTCAAGCACTGCTGCT
GCTGCTCAACAAGCTGCCGGTGCTGCTGCTGCTGCTGCCCAAAAAGCTGCTATGGCTGCT
GCCTATAAAGTTTGGTCAATTGTAAATTCACCATGTAACTGTGAATGTGGATTGAAGAGA
TTATAAATTGATTCAACTCNTCNTCTCCAATGACAATAAATTAAAATAATACAACTCATT
CTTATTTTTCTTTATTCTAACCAATGTATTTGTCAATTAACTTATTAACTTTTTAAACAC
ACCCTTTTCAATTTTAAAACAATAAAAA
Length of connected seq. 918
Full length Seq ID -
Full length Seq. -
Length of full length seq. -