NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHB572
Library SH
(Link to library)
Clone ID SHB572
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SHB572P
(Link to Original site)
Representative DNA sequence 
>SHB572 (SHB572Q) /CSM/SH/SHB5-C/SHB572Q.Seq.d/
CTGTTGGCCTACTGGNACATTGACCCGCAATTAGTAATTAGTAAAGNAATGAAATTAAAA
CATTTAACTATTTTTTTATTTATTTTTATTTATAGGTTTTTATTTGTTAAATCGGATTGT
TATCTAATAAACAATGAAAGGCCGGAGACAAAAATAACCAAAATCCGATGTGATGATCAA
GTTATTTCCATTCTTTTAAATCCAAATAATAGAACTGATGCAACACTGGAAAAGGACACT
GATGGAAAGTTTTATTTTGATGTTGTTAATTTTCCATACAAGGATAGACTTTGTGATTAT
ACCTATGATATTTATTTTTTACCAGAAATCCCATCCCTTCCATCTGTCCCCACAATAGGA
GGATCCGTTAATTTCACATATAACTATCCTTGTACAAGTGTTTATGGTAGAATAAAACCT
TTGAATATAGCAAACAAAATTGTAACACCATACAATATCAATTTAGACCAGTTCACCATG
AGAATACAACCAGGCTGTGGAGATTTAATTATAAATTCAGGCTCAAGAGTAATTTATAAT
GCTTCATATCAAACTGGAGATATACCAAATAAACCAACAATCGATGACCAAGGGAAATAT
TACCATTCAAGGAAGTAACCTTTACAACACCCAAATTAAAATTAAXXXXXXXXXXAAATT
TTCCAATTTAAATATGAATCAACNATTAGTTATAGTGAAAATAAGTCATCAGGATTTCCA
AATGAAATGTATATCGGTATTGTTGCAATTATAATATTTTTAGCATTAATTTTCTTTGCT
ATTAAAACACAGGTTGAAAAATATATTGAAGAGAGAAGAGCCAGAAAAGCATTTAGATCA
GTTGATAATCTACGTCTTAAACTTCGTGAGAAACATGCTGCTGAAATCGCTAAACATTAT
TCATTTGGTTATGAAAGCGCTCCAAAACCAAATAAAAGTTATTTCTATGATTTAGGAAAG
AAATTAT
sequence update 2002.10.25
Translated Amino Acid sequence 
cwptgtltrn**lvkx*n*ni*lffylflfigfyllnrivi**tmkgrrqk*pksdvmik
lfpff*iqiielmqhwkrtlmesfilmllifhtridfviipmififyqkshpfhlspq*e
dplishitilvqvfmve*nl*i*qtkl*hhtisi*tssp*eynqavei*l*iqaqe*FIM
LHIKLEIYQINQQSMTKGNITIQGSNLYNTQIKI---

---IFQFKYESTISYSENKSSGFPNEMYIGIVAIIIFLALIFFAIKTQVEKYIEERRARK
AFRSVDNLRLKLREKHAAEIAKHYSFGYESAPKPNKSYFYDLGKKL
Translated Amino Acid sequence (All Frames) 
Frame A:
llaywxidpqlviskxmklkhltiflfifiyrflfvksdcylinnerpetkitkircddq
visillnpnnrtdatlekdtdgkfyfdvvnfpykdrlcdytydiyflpeipslpsvptig
gsvnftynypctsvygrikplniankivtpyninldqftmriqpgcgdliinsgsrviyn
asyqtgdipnkptiddqgkyyhsrk*plqhpn*n*---

---kfsnlnmnqxlvivkishqdfqmkcisvllql*yf*h*fslllkhrlknilkreepe
khldqliiyvlnfvrnmllkslniihlvmkalqnqikvismi*erny

Frame B:
cwptgtltrn**lvkx*n*ni*lffylflfigfyllnrivi**tmkgrrqk*pksdvmik
lfpff*iqiielmqhwkrtlmesfilmllifhtridfviipmififyqkshpfhlspq*e
dplishitilvqvfmve*nl*i*qtkl*hhtisi*tssp*eynqavei*l*iqaqe*FIM
LHIKLEIYQINQQSMTKGNITIQGSNLYNTQIKI---

---nfpi*i*inx*l**k*virisk*nvyryccnynifsinflcy*ntg*kiy*reksqk
si*is**sts*ts*etcc*nr*tlfiwl*krsktk*klfl*frkei

Frame C:
vgllxh*paisn**xneiktfnyffiyfyl*vfic*igllsnkq*kagdknnqnpm**ss
yfhsfksk**n*cntgkgh*wkvlf*cc*fsiqg*tl*lyl*ylfftrnpipsicphnrr
ir*fhi*lslykclw*nktfeyskqncntiqyqfrpvhhenttrlwrfnykfrlksnl*c
fisnwrytk*tnnr*preilpfkevtfttpklkl---

---IFQFKYESTISYSENKSSGFPNEMYIGIVAIIIFLALIFFAIKTQVEKYIEERRARK
AFRSVDNLRLKLREKHAAEIAKHYSFGYESAPKPNKSYFYDLGKKL
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHB572 (SHB572Q) /CSM/SH/SHB5-C/SHB572Q.Seq.d/                       1643   0.0
SHL812 (SHL812Q) /CSM/SH/SHL8-A/SHL812Q.Seq.d/                       1055   0.0
SHL593 (SHL593Q) /CSM/SH/SHL5-D/SHL593Q.Seq.d/                       1055   0.0
SHL412 (SHL412Q) /CSM/SH/SHL4-A/SHL412Q.Seq.d/                       1055   0.0
SHL202 (SHL202Q) /CSM/SH/SHL2-A/SHL202Q.Seq.d/                       1055   0.0
SHK837 (SHK837Q) /CSM/SH/SHK8-B/SHK837Q.Seq.d/                       1055   0.0
SHK745 (SHK745Q) /CSM/SH/SHK7-B/SHK745Q.Seq.d/                       1055   0.0
SHK166 (SHK166Q) /CSM/SH/SHK1-C/SHK166Q.Seq.d/                       1055   0.0
SHJ869 (SHJ869Q) /CSM/SH/SHJ8-C/SHJ869Q.Seq.d/                       1055   0.0
SHI639 (SHI639Q) /CSM/SH/SHI6-B/SHI639Q.Seq.d/                       1055   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    66   3e-13  7
AZ687404|AZ687404.1 ENTIV16TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.066  2
AZ532160|AZ532160.1 ENTCE42TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.067  2
BH150005|BH150005.1 ENTQN09TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.067  2
AZ551491|AZ551491.1 ENTFT25TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.067  2
AZ672938|AZ672938.1 ENTMM06TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.067  2
AC122168|AC122168.14 Medicago truncatula clone mth2-4o4, complete sequence.    42   0.099  6
DU571553|DU571553.1 OO__Ba0057P22.f OO__Ba Oryza officinalis genomic clone OO__Ba0057P22 5', genomic survey sequence.    48   0.34   1
CZ115922|CZ115922.1 OA_BBa0001A09.f OA_BBa Oryza alta genomic clone OA_BBa0001A09 5', genomic survey sequence.    48   0.34   1
AC174141|AC174141.1 Medicago truncatula clone mth2-165i11, WORKING DRAFT SEQUENCE, 11 unordered pieces.    42   1.1    8
dna update 2005.12.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FJ374971_1(FJ374971|pid:none) Dictyostelium discoideum strain AX...   348   e-100
FJ374968_1(FJ374968|pid:none) Dictyostelium discoideum strain QS...   348   e-100
FJ374970_1(FJ374970|pid:none) Dictyostelium discoideum strain QS...   348   e-100
FJ374973_1(FJ374973|pid:none) Dictyostelium discoideum strain QS...   348   e-100
FJ374903_1(FJ374903|pid:none) Dictyostelium discoideum strain QS...   145   3e-33
FJ374905_1(FJ374905|pid:none) Dictyostelium discoideum strain QS...   145   3e-33
FJ374895_1(FJ374895|pid:none) Dictyostelium discoideum strain QS...   145   3e-33
FJ374902_1(FJ374902|pid:none) Dictyostelium discoideum strain QS...   145   3e-33
FJ374919_1(FJ374919|pid:none) Dictyostelium discoideum strain QS...   145   3e-33
FJ374909_1(FJ374909|pid:none) Dictyostelium discoideum strain QS...   143   1e-32
protein update 2009. 4.15
PSORT 

 psg: 0.66  gvh: 0.28  alm: 0.08  top: 0.80  tms: 0.07  mit: 0.17  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: nuclear
	 24.0 %: mitochondrial
	 24.0 %: cytoplasmic
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for SHB572 is nuc
5' end seq. ID SHB572F
5' end seq. 
>SHB572F.Seq
CTGTTGGCCTACTGGNACATTGACCCGCAATTAGTAATTAGTAAAGNAATGAAATTAAAA
CATTTAACTATTTTTTTATTTATTTTTATTTATAGGTTTTTATTTGTTAAATCGGATTGT
TATCTAATAAACAATGAAAGGCCGGAGACAAAAATAACCAAAATCCGATGTGATGATCAA
GTTATTTCCATTCTTTTAAATCCAAATAATAGAACTGATGCAACACTGGAAAAGGACACT
GATGGAAAGTTTTATTTTGATGTTGTTAATTTTCCATACAAGGATAGACTTTGTGATTAT
ACCTATGATATTTATTTTTTACCAGAAATCCCATCCCTTCCATCTGTCCCCACAATAGGA
GGATCCGTTAATTTCACATATAACTATCCTTGTACAAGTGTTTATGGTAGAATAAAACCT
TTGAATATAGCAAACAAAATTGTAACACCATACAATATCAATTTAGACCAGTTCACCATG
AGAATACAACCAGGCTGTGGAGATTTAATTATAAATTCAGGCTCAAGAGTAATTTATAAT
GCTTCATATCAAACTGGAGATATACCAAATAAACCAACAATCGATGACCAAGGGAAATAT
TACCATTCAAGGAAGTAACCTTTACAACACCCAAATTAAAATTAANNNNNNNNNN
Length of 5' end seq. 655
3' end seq. ID SHB572Z
3' end seq. 
>SHB572Z.Seq
NNNNNNNNNNAAATTTTCCAATTTAAATATGAATCAACNATTAGTTATAGTGAAAATAAG
TCATCAGGATTTCCAAATGAAATGTATATCGGTATTGTTGCAATTATAATATTTTTAGCA
TTAATTTTCTTTGCTATTAAAACACAGGTTGAAAAATATATTGAAGAGAGAAGAGCCAGA
AAAGCATTTAGATCAGTTGATAATCTACGTCTTAAACTTCGTGAGAAACATGCTGCTGAA
ATCGCTAAACATTATTCATTTGGTTATGAAAGCGCTCCAAAACCAAATAAAAGTTATTTC
TATGATTTAGGAAAGAAATTAT
Length of 3' end seq. 322
Connected seq. ID SHB572P
Connected seq. 
>SHB572P.Seq
CTGTTGGCCTACTGGNACATTGACCCGCAATTAGTAATTAGTAAAGNAATGAAATTAAAA
CATTTAACTATTTTTTTATTTATTTTTATTTATAGGTTTTTATTTGTTAAATCGGATTGT
TATCTAATAAACAATGAAAGGCCGGAGACAAAAATAACCAAAATCCGATGTGATGATCAA
GTTATTTCCATTCTTTTAAATCCAAATAATAGAACTGATGCAACACTGGAAAAGGACACT
GATGGAAAGTTTTATTTTGATGTTGTTAATTTTCCATACAAGGATAGACTTTGTGATTAT
ACCTATGATATTTATTTTTTACCAGAAATCCCATCCCTTCCATCTGTCCCCACAATAGGA
GGATCCGTTAATTTCACATATAACTATCCTTGTACAAGTGTTTATGGTAGAATAAAACCT
TTGAATATAGCAAACAAAATTGTAACACCATACAATATCAATTTAGACCAGTTCACCATG
AGAATACAACCAGGCTGTGGAGATTTAATTATAAATTCAGGCTCAAGAGTAATTTATAAT
GCTTCATATCAAACTGGAGATATACCAAATAAACCAACAATCGATGACCAAGGGAAATAT
TACCATTCAAGGAAGTAACCTTTACAACACCCAAATTAAAATTAA----------AAATT
TTCCAATTTAAATATGAATCAACNATTAGTTATAGTGAAAATAAGTCATCAGGATTTCCA
AATGAAATGTATATCGGTATTGTTGCAATTATAATATTTTTAGCATTAATTTTCTTTGCT
ATTAAAACACAGGTTGAAAAATATATTGAAGAGAGAAGAGCCAGAAAAGCATTTAGATCA
GTTGATAATCTACGTCTTAAACTTCGTGAGAAACATGCTGCTGAAATCGCTAAACATTAT
TCATTTGGTTATGAAAGCGCTCCAAAACCAAATAAAAGTTATTTCTATGATTTAGGAAAG
AAATTAT
Length of connected seq. 957
Full length Seq ID -
Full length Seq. -
Length of full length seq. -