SHB547
Library SH
(Link to library)
Clone ID SHB547
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID SHB547P
(Link to Original site)
Representative DNA sequence
>SHB547 (SHB547Q) /CSM/SH/SHB5-B/SHB547Q.Seq.d/
CACTGTTGGCCTACTGGNAAAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCT
TTCTTTTTAAAGTTTAAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTT
AAAAAAAAAAXXXXXXXXXXGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTA
TTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCNTTTTTAG
ATGAAAATGAACAAGATGCTGTNTAAATTACAAAATGAAATGGACCAATTAGAACTCTTA
CTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAAT
GAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAA
ATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAA
AAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGNNNNAGCTCAACTTGAA
TTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAA
GAGAAACAGACAATNTCTTGACCAAATTAAGAAATCAATTAAAAAATATTCAACATGAAC
AACAAATCCAAGAACNCCAAGTATAAATTAAATCAAGAAGAAAATCAACNATTATTAGAA
CAAGAGACAAAGATCAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence
hcwptgkiinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---EQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAV*itk*ngpirtlt*re
*rrtifk*kfttt**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknst
rercclle*cxxsst*igc*ig*k**tresr*efssretdnxltklrnqlkniqheqqiq
exqv*iksrrkstiirtrdkdqk


Translated Amino Acid sequence (All Frames)
Frame A:
hcwptgkiinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---EQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAV*itk*ngpirtlt*re
*rrtifk*kfttt**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknst
rercclle*cxxsst*igc*ig*k**tresr*efssretdnxltklrnqlkniqheqqiq
exqv*iksrrkstiirtrdkdqk

Frame B:
tvgllxk**iyyqitifsflsf*slnnrnnkn*y*kkgtlkkk---

---nkmplnklniynvlkmvkismsmklpnmklxf*mkmnkmlxklqnemdqlellleen
eeeqfsnknlqqlnenenqqqqqgqqqvqatnveqqiveqlkvikefqrqdqqkkqkiqq
endavylsdvxxaqleldaelaknnkqenqdenlvqekqtxs*pn*ein*kifnmnnksk
nxkyklnqeenqxlleqetkik

Frame C:
llaywxnnkftik*lfflfflfkv*iieiikinikkker*kk---

---trch*tsstftty*kw*ryr*v*scpt*scxfr*k*trccxnykmkwtn*nsylkrm
kknnfqikiynnlmrmkinnnnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfnk
rtmlst*vmlxxlnlnwmlnwlkiinkrikmri*fkrnrqxldqikksikkyst*ttnpr
tpsin*ikkkinxy*nkrqrsk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHB547 (SHB547Q) /CSM/SH/SHB5-B/SHB547Q.Seq.d/ 620 e-177
SHB625 (SHB625Q) /CSM/SH/SHB6-B/SHB625Q.Seq.d/ 561 e-159
CHH549 (CHH549Q) /CSM/CH/CHH5-C/CHH549Q.Seq.d/ 549 e-155
SHB728 (SHB728Q) /CSM/SH/SHB7-B/SHB728Q.Seq.d/ 547 e-155
SHB752 (SHB752Q) /CSM/SH/SHB7-C/SHB752Q.Seq.d/ 543 e-153
SHB640 (SHB640Q) /CSM/SH/SHB6-B/SHB640Q.Seq.d/ 535 e-151
CHQ462 (CHQ462Q) /CSM/CH/CHQ4-C/CHQ462Q.Seq.d/ 535 e-151
AHG302 (AHG302Q) /CSM/AH/AHG3-A/AHG302Q.Seq.d/ 535 e-151
CHQ174 (CHQ174Q) /CSM/CH/CHQ1-D/CHQ174Q.Seq.d/ 533 e-150
SHL875 (SHL875Q) /CSM/SH/SHL8-D/SHL875Q.Seq.d/ 527 e-149

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds. 377 0.0 7
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 127 4e-25 1
DT633626|DT633626.1 EST1148557 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFW90 3' end, mRNA sequence. 48 0.26 1
CJ471991|CJ471991.1 Macaca fascicularis mRNA, clone: QorA-11729, 5' end, expressed in brain occipital lobe. 48 0.26 1
DT364098|DT364098.1 JGI_ANNN9278.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN9278 3', mRNA sequence. 48 0.26 1
DT347978|DT347978.1 JGI_CAAX10802.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX10802 5', mRNA sequence. 48 0.26 1
DT309975|DT309975.1 JGI_CAAX1517.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 5', mRNA sequence. 48 0.26 1
DT102344|DT102344.1 JGI_ANNN5669.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN5669 3', mRNA sequence. 48 0.26 1
DT309974|DT309974.1 JGI_CAAX1517.rev CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 3', mRNA sequence. 48 0.26 1
DR686823|DR686823.1 EST1076901 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PWABK24 3' end, mRNA sequence. 48 0.26 1
dna update 2005.12.25
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags... 84 6e-15

protein update 2008.11.13
PSORT

psg: 0.36 gvh: 0.16 alm: 0.68 top: 0.53 tms: 0.00 mit: 0.25 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
32.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for SHB547 is nuc

5' end seq. ID SHB547F
5' end seq.
>SHB547F.Seq
CACTGTTGGCCTACTGGNAAAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCT
TTCTTTTTAAAGTTTAAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTT
AAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 140
3' end seq. ID SHB547Z
3' end seq.
>SHB547Z.Seq
NNNNNNNNNNGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGG
TGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCNTTTTTAGATGAAAATGA
ACAAGATGCTGTNTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGA
ATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAAC
AACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAAC
AACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAAC
AAGAGAACGATGCTGTCTACTTGAGTGATGTTGNNNNAGCTCAACTTGAATTGGATGCTG
AATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAGA
CAATNTCTTGACCAAATTAAGAAATCAATTAAAAAATATTCAACATGAACAACAAATCCA
AGAACNCCAAGTATAAATTAAATCAAGAAGAAAATCAACNATTATTAGAACAAGAGACAA
AGATCAAAAA
Length of 3' end seq. 610
Connected seq. ID SHB547P
Connected seq.
>SHB547P.Seq
CACTGTTGGCCTACTGGNAAAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCT
TTCTTTTTAAAGTTTAAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTT
AAAAAAAAAA----------GAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTA
TTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCNTTTTTAG
ATGAAAATGAACAAGATGCTGTNTAAATTACAAAATGAAATGGACCAATTAGAACTCTTA
CTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAAT
GAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAA
ATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAA
AAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGNNNNAGCTCAACTTGAA
TTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAA
GAGAAACAGACAATNTCTTGACCAAATTAAGAAATCAATTAAAAAATATTCAACATGAAC
AACAAATCCAAGAACNCCAAGTATAAATTAAATCAAGAAGAAAATCAACNATTATTAGAA
CAAGAGACAAAGATCAAAAA
Length of connected seq. 730
Full length Seq ID -
Full length Seq. -
Length of full length seq. -