SHB534
Library SH
(Link to library)
Clone ID SHB534
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11249-1|Contig-U12738-1
Original site URL
Representative seq. ID SHB534P
(Link to Original site)
Representative DNA sequence
>SHB534 (SHB534Q) /CSM/SH/SHB5-B/SHB534Q.Seq.d/
ATTTACCTTAGTATTTTTATTTATTACATATTTAAATATTATTTTTAAAAGAGATAATGC
CCAAAACTAAAGATCAAAGACTCAAAGTATCTCATTCTTTAAGAAATAATCTTCTAAACT
ATCCAGAATCAAAAATAGTTAGAGAGTTGATTCAAAATGCAGAAGATGCTCTAGCTGATA
CATTCATAATAAAGGTTGATGAAGGCTCATATCCAAATAATGGGTTATTAATTTCAAATG
ATAACCAAGAAATTGAAAGTTCAAAAGAATTATTAGGTCCATCAATTTTAATTTATAATA
ATGCAACTTTTCATGAACAGGATTGGGAAGGCATTTGTGAAATTAATCAAGGTAGTAAAA
AAGAAAATTTAAAAAGTGTTGGCAATTTCGGTTTAGGTTGGAACAGTGTTTATCATATAA
CAGATAATCCAATTGTTTATAGTGGTAATAATGTTTGGTTTGCAGATCCAAATGAAAGAA
TTGGTGGTGGTTTATTCTTTGATTTGGACGATGAAGATGATTATAACAAATGTTTTAGTT
TTTTAGAGCCAXXXXXXXXXXATCAAGATTCAATAGNNNCNTATCAAACTTTTATGGATT
ATTTGAATCAAAGAGGTGAGAATATTGGTGATTCATTAATTGATTCTTTCAAAGATATCC
CATTTATTCCATCCAGTGAATTCGATACNTATGATGGATTTGGCTCAAAT
sequence update 2002.10.25
Translated Amino Acid sequence
lp*yfyllhi*ILFLKEIMPKTKDQRLKVSHSLRNNLLNYPESKIVRELIQNAEDALADT
FIIKVDEGSYPNNGLLISNDNQEIESSKELLGPSILIYNNATFHEQDWEGICEINQGSKK
ENLKSVGNFGLGWNSVYHITDNPIVYSGNNVWFADPNERIGGGLFFDLDDEDDYNKCFSF
LEP---

---QDSIXXYQTFMDYLNQRGENIGDSLIDSFKDIPFIPSSEFDTYDGFGSN


Translated Amino Acid sequence (All Frames)
Frame A:
iylsifiyyifkyyf*kr*cpklkikdskylil*eiif*tiqnqk*les*fkmqkml*li
hs**rlmkahiqimgy*fqmitkklkvqkny*vhqf*fiimqlfmnrigkafvklikvvk
kki*kvlaisv*vgtvfii*qiiqlfivvimfglqiqmkelvvvysliwtmkmiitnvlv
f*s---

---ikiq*xxikllwii*ikevrilvih*lilskishlfhpvnsixmmdlaq

Frame B:
ftlvflfitylniifkrdnaqn*rsktqsisffkk*ssklsrikns*rvdskcrrcss*y
ihnkg**rlisk*wvinfk**prn*kfkriirsinfnl**cnfs*tglgrhl*n*sr**k
rkfkkcwqfrfrleqclsynr*sncl*w**clvcrsk*knwwwfil*fgr*r*l*qmf*f
fra---

---srfnxxxsnfyglfeskr*eyw*fin*ffqrypiysiq*iryx*wiwlk

Frame C:
lp*yfyllhi*ILFLKEIMPKTKDQRLKVSHSLRNNLLNYPESKIVRELIQNAEDALADT
FIIKVDEGSYPNNGLLISNDNQEIESSKELLGPSILIYNNATFHEQDWEGICEINQGSKK
ENLKSVGNFGLGWNSVYHITDNPIVYSGNNVWFADPNERIGGGLFFDLDDEDDYNKCFSF
LEP---

---QDSIXXYQTFMDYLNQRGENIGDSLIDSFKDIPFIPSSEFDTYDGFGSN

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHB534 (SHB534Q) /CSM/SH/SHB5-B/SHB534Q.Seq.d/ 613 e-174
AHJ527 (AHJ527Q) /CSM/AH/AHJ5-B/AHJ527Q.Seq.d/ 613 e-174
AHC820 (AHC820Q) /CSM/AH/AHC8-A/AHC820Q.Seq.d/ 599 e-170
VHN647 (VHN647Q) /CSM/VH/VHN6-B/VHN647Q.Seq.d/ 430 e-119
VHK810 (VHK810Q) /CSM/VH/VHK8-A/VHK810Q.Seq.d/ 430 e-119
VHK791 (VHK791Q) /CSM/VH/VHK7-D/VHK791Q.Seq.d/ 430 e-119
VHE271 (VHE271Q) /CSM/VH/VHE2-C/VHE271Q.Seq.d/ 430 e-119
VHD239 (VHD239Q) /CSM/VH/VHD2-B/VHD239Q.Seq.d/ 430 e-119
VHC102 (VHC102Q) /CSM/VH/VHC1-A/VHC102Q.Seq.d/ 430 e-119
VHB767 (VHB767Q) /CSM/VH/VHB7-C/VHB767Q.Seq.d/ 430 e-119

own update 2002.10.15
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AB024723|AB024723.1 Colwellia psychroerythraea gene for Na-translocating NADH-quinone reductase, partial cds. 38 0.18 2
BG787311|BG787311.1 SEAUMC007268 Sea urchin primary mesenchyme cell cDNA library Strongylocentrotus purpuratus cDNA clone PM990802-03-0232 5', mRNA sequence. 40 0.69 2
C62580|C62580.1 C.elegans cDNA clone yk288a8 : 5' end, single read. 46 0.99 1
BJ119691|BJ119691.2 Caenorhabditis elegans cDNA clone:yk1246g09 : 5' end, single read. 46 0.99 1
AX344570|AX344570.1 Sequence 21 from Patent WO0200932. 46 0.99 1
AX344569|AX344569.1 Sequence 20 from Patent WO0200932. 46 0.99 1
AC114305|AC114305.1 Homo sapiens chromosome 5 clone RP11-190I5, WORKING DRAFT SEQUENCE, 2 unordered pieces. 46 0.99 1
AC026088|AC026088.1 Homo sapiens clone RP11-622M23, *** SEQUENCING IN PROGRESS ***, 49 unordered pieces. 46 0.99 1
DD010736|DD010736.1 Diagnosis of known genetic Parameters within the MHC. 46 0.99 1
CZ457816|CZ457816.1 MCF745f11TF Human MCF7 breast cancer cell line library (MCF7_1) Homo sapiens genomic clone MCF7_45f11, genomic survey sequence. 46 0.99 1
dna update 2005.12.25
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q9NZJ4) RecName: Full=Sacsin; &AL157766_4(AL157766|pid:none) 99 2e-19
BC138482_1(BC138482|pid:none) Mus musculus sacsin, mRNA (cDNA cl... 97 6e-19
(Q9JLC8) RecName: Full=Sacsin; 97 6e-19
BC171956_1(BC171956|pid:none) Mus musculus cDNA clone MGC:198661... 97 6e-19
BC142916_1(BC142916|pid:none) Danio rerio hypothetical LOC555303... 94 4e-18
AB006708_10(AB006708|pid:none) Arabidopsis thaliana genomic DNA,... 86 8e-16
AL732351_6(AL732351|pid:none) Oryza sativa genomic DNA, chromoso... 83 9e-15
AL606457_18(AL606457|pid:none) Oryza sativa genomic DNA, chromos... 83 9e-15
CR749427_1(CR749427|pid:none) Homo sapiens mRNA; cDNA DKFZp686B1... 74 4e-12
AE017282_697(AE017282|pid:none) Methylococcus capsulatus str. Ba... 51 3e-05
protein update 2009. 4.15
PSORT

psg: 0.38 gvh: 0.37 alm: 0.50 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
36.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for SHB534 is nuc

5' end seq. ID SHB534F
5' end seq.
>SHB534F.Seq
ATTTACCTTAGTATTTTTATTTATTACATATTTAAATATTATTTTTAAAAGAGATAATGC
CCAAAACTAAAGATCAAAGACTCAAAGTATCTCATTCTTTAAGAAATAATCTTCTAAACT
ATCCAGAATCAAAAATAGTTAGAGAGTTGATTCAAAATGCAGAAGATGCTCTAGCTGATA
CATTCATAATAAAGGTTGATGAAGGCTCATATCCAAATAATGGGTTATTAATTTCAAATG
ATAACCAAGAAATTGAAAGTTCAAAAGAATTATTAGGTCCATCAATTTTAATTTATAATA
ATGCAACTTTTCATGAACAGGATTGGGAAGGCATTTGTGAAATTAATCAAGGTAGTAAAA
AAGAAAATTTAAAAAGTGTTGGCAATTTCGGTTTAGGTTGGAACAGTGTTTATCATATAA
CAGATAATCCAATTGTTTATAGTGGTAATAATGTTTGGTTTGCAGATCCAAATGAAAGAA
TTGGTGGTGGTTTATTCTTTGATTTGGACGATGAAGATGATTATAACAAATGTTTTAGTT
TTTTAGAGCCANNNNNNNNNN
Length of 5' end seq. 561
3' end seq. ID SHB534Z
3' end seq.
>SHB534Z.Seq
NNNNNNNNNNATCAAGATTCAATAGNNNCNTATCAAACTTTTATGGATTATTTGAATCAA
AGAGGTGAGAATATTGGTGATTCATTAATTGATTCTTTCAAAGATATCCCATTTATTCCA
TCCAGTGAATTCGATACNTATGATGGATTTGGCTCAAAT
Length of 3' end seq. 159
Connected seq. ID SHB534P
Connected seq.
>SHB534P.Seq
ATTTACCTTAGTATTTTTATTTATTACATATTTAAATATTATTTTTAAAAGAGATAATGC
CCAAAACTAAAGATCAAAGACTCAAAGTATCTCATTCTTTAAGAAATAATCTTCTAAACT
ATCCAGAATCAAAAATAGTTAGAGAGTTGATTCAAAATGCAGAAGATGCTCTAGCTGATA
CATTCATAATAAAGGTTGATGAAGGCTCATATCCAAATAATGGGTTATTAATTTCAAATG
ATAACCAAGAAATTGAAAGTTCAAAAGAATTATTAGGTCCATCAATTTTAATTTATAATA
ATGCAACTTTTCATGAACAGGATTGGGAAGGCATTTGTGAAATTAATCAAGGTAGTAAAA
AAGAAAATTTAAAAAGTGTTGGCAATTTCGGTTTAGGTTGGAACAGTGTTTATCATATAA
CAGATAATCCAATTGTTTATAGTGGTAATAATGTTTGGTTTGCAGATCCAAATGAAAGAA
TTGGTGGTGGTTTATTCTTTGATTTGGACGATGAAGATGATTATAACAAATGTTTTAGTT
TTTTAGAGCCA----------ATCAAGATTCAATAGNNNCNTATCAAACTTTTATGGATT
ATTTGAATCAAAGAGGTGAGAATATTGGTGATTCATTAATTGATTCTTTCAAAGATATCC
CATTTATTCCATCCAGTGAATTCGATACNTATGATGGATTTGGCTCAAAT
Length of connected seq. 700
Full length Seq ID -
Full length Seq. -
Length of full length seq. -