SHB489
Library SH
(Link to library)
Clone ID SHB489
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16360-1
Original site URL
Representative seq. ID SHB489P
(Link to Original site)
Representative DNA sequence
>SHB489 (SHB489Q) /CSM/SH/SHB4-D/SHB489Q.Seq.d/
ACTGTTGGCCTACTGGNATTTATTTAATTTCAATTAAATTATTTAAACACATACACAAAA
AAAAAAATAATATNGATAAACGCTTCATCAAAATTATAATTTAATCTATAAAGACCATAT
TTTATTTATTTATTNAATTTTTTATTTTCTATTTATTTATTTATTCAAATTTTTTTTTTT
TNAATTTTAAATAATTAAAAAAAAAAXXXXXXXXXXCACCAACTGCTTTCTTCTATGATG
CTTCTCCATTAATTATGAGTATTTGGACTGTACCAATCGTTGTAAAAGATCCAATCATTT
TCATTCTCGTCGGTATGATTCCTGTAATGGTGTTACCAAGAGTCATTCAATATATGATTC
TTAGAGCCAAGAGACCTTATGAAGCCGGTAAGAGTGGTCCATCACTTTGGGTAGAAGCTA
CTGATCTTTGGAGAGCTGAACAAACTTTCTTTGGTTTTGCTGGTACTTATATTTCATCAT
GGAGAGAAGGTTCCGCTTCAATCGTTAAACTTCTTAAAGCTAGAAAGATTAGTCGTCATA
AGTTAGCCATGTGGAATTGGAAGAGAGATTTCGTAAAGAAACCAGTAGTTTGTGAAGTTT
TCCGTCAAACTAAATTGGTCAATGAAAATGATAATGCTCAAGAATCAAGTGGTAAACATA
AGGCTGGAACAATCTTTCCGTACTTCAAACAAAGAATCTGATACCATTAAAAATTCAAGA
CTTTTCCTTCCAAATATTATCCTCTTTGTTGTTAATATCTTGGCTATGATGAGTGCTGTA
CTTAGATTTAATTGTTTCCAAAATGATATGTGGCTTTTGGTTGTCGTAGCTGGTTTCTCT
TTCTCTACCTTATGGCATTTATGGTCTTTCATTCCAATGGCTCTTCGTCAAAGTGAAAAA
CAA
sequence update 2002.10.25
Translated Amino Acid sequence
llaywxlfnfn*ii*thtqkkk*yx*tlhqnynliykdhilfiyxifyflfiylfkffff
xf*IIKKK---

---PTAFFYDASPLIMSIWTVPIVVKDPIIFILVGMIPVMVLPRVIQYMILRAKRPYEAG
KSGPSLWVEATDLWRAEQTFFGFAGTYISSWREGSASIVKLLKARKISRHKLAMWNWKRD
FVKKPVVCEVFRQTKLVNENDNAQESSGKHKAGTIFPYFKQRI*yh*kfktfpskyyplc
c*ylgydecct*i*lfpk*yvafgcrswflflylmafmvfhsngsssk*kt


Translated Amino Acid sequence (All Frames)
Frame A:
tvgllxfi*fqlnylntytkkkiixinasskl*fnl*rpyfiylxnflfsiylfiqifff
xilnn*kk---

---hqllssmmllh*l*vfglyqsl*kiqsfsfssv*fl*wcyqesfni*fleprdlmkp
vrvvhhfg*kllifgelnklslvllvlifhhgekvplqslnflklerlvvis*pcgigre
is*rnq*fvkfsvklnwsmkmimlknqvvnirleqsfrtsnkesdtiknsrlflpniilf
vvnilammsavlrfncfqndmwllvvvagfsfstlwhlwsfipmalrqsekq

Frame B:
llaywxlfnfn*ii*thtqkkk*yx*tlhqnynliykdhilfiyxifyflfiylfkffff
xf*IIKKK---

---tncfll*cfsinyeyldctnrckrsnhfhsrrydscngvtkshsiyds*sqetl*sr
*ewsitlgrsy*sles*tnflwfcwylyfimerrfrfnr*ts*s*kd*ss*vshveleer
frketssl*sfpsn*igq*k**csrikw*t*gwnnlsvlqtknliplkiqdfsfqilssl
lliswl**vlyldlivskmicgfwls*lvslslpygiyglsfqwlfvkvkn

Frame C:
cwptgiylisiklfkhihkkknnxdkrfikiii*siktifylfixffifylfiysnfffx
nfk*lkkk---

---PTAFFYDASPLIMSIWTVPIVVKDPIIFILVGMIPVMVLPRVIQYMILRAKRPYEAG
KSGPSLWVEATDLWRAEQTFFGFAGTYISSWREGSASIVKLLKARKISRHKLAMWNWKRD
FVKKPVVCEVFRQTKLVNENDNAQESSGKHKAGTIFPYFKQRI*yh*kfktfpskyyplc
c*ylgydecct*i*lfpk*yvafgcrswflflylmafmvfhsngsssk*kt

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHB489 (SHB489Q) /CSM/SH/SHB4-D/SHB489Q.Seq.d/ 1362 0.0
SHG755 (SHG755Q) /CSM/SH/SHG7-C/SHG755Q.Seq.d/ 1338 0.0
SHG576 (SHG576Q) /CSM/SH/SHG5-D/SHG576Q.Seq.d/ 1338 0.0
SHG402 (SHG402Q) /CSM/SH/SHG4-A/SHG402Q.Seq.d/ 1338 0.0
SHA559 (SHA559Q) /CSM/SH/SHA5-C/SHA559Q.Seq.d/ 1338 0.0
SFK796 (SFK796Q) /CSM/SF/SFK7-D/SFK796Q.Seq.d/ 1338 0.0
SFE645 (SFE645Q) /CSM/SF/SFE6-B/SFE645Q.Seq.d/ 1338 0.0
AHD834 (AHD834Q) /CSM/AH/AHD8-B/AHD834Q.Seq.d/ 1338 0.0
AFE444 (AFE444Q) /CSM/AF/AFE4-B/AFE444Q.Seq.d/ 1338 0.0
CHN239 (CHN239Q) /CSM/CH/CHN2-B/CHN239Q.Seq.d/ 1332 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF163835|AF163835.1 Dictyostelium discoideum cellulose synthase (dcsA) mRNA, complete cds. 884 0.0 2
BM598351|BM598351.1 17000687619693 A.Gam.ad.cDNA.blood1 Anopheles gambiae cDNA clone 19600449727612 5', mRNA sequence. 52 0.021 1
BM586494|BM586494.1 17000687314976 A.Gam.ad.cDNA.blood1 Anopheles gambiae cDNA clone 19600449681047 5', mRNA sequence. 52 0.021 1
AL390120|AL390120.9 Human DNA sequence *** SEQUENCING CANCELLED *** from clone RP11-521N12. 50 0.081 1
AC141620|AC141620.1 Homo sapiens chromosome 16 clone RP11-960H18, WORKING DRAFT SEQUENCE, 2 unordered pieces. 50 0.081 1
AL596258|AL596258.15 Mouse DNA sequence from clone RP23-226P4 on chromosome 11. 50 0.081 1
AL139428|AL139428.15 Human DNA sequence from clone RP5-977F20 on chromosome 1. 50 0.081 1
AL049825|AL049825.18 Human DNA sequence from clone RP4-662B22 on chromosome 1p12-13.3. 50 0.081 1
AP004931|AP004931.1 Lotus japonicus genomic DNA, chromosome 4, clone:LjT13G01, TM0093b. 42 0.23 3
CJ430353|CJ430353.1 Macaca fascicularis mRNA, clone: QbsA-10117, 5' end, expressed in brain stem. 36 0.25 2
dna update 2005.12.24
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q9U720) RecName: Full=Cellulose synthase catalytic subunit A [U... 303 e-123
CP001025_1222(CP001025|pid:none) Burkholderia ambifaria MC40-6 c... 35 2.5
CP001048_907(CP001048|pid:none) Yersinia pseudotuberculosis PB1/... 35 2.5
CP000431_1654(CP000431|pid:none) Rhodococcus jostii RHA1, comple... 35 4.3
CP001279_992(CP001279|pid:none) Nautilia profundicola AmH, compl... 34 5.6

protein update 2009. 4.15
PSORT

psg: 0.77 gvh: 0.48 alm: 0.23 top: 0.73 tms: 0.07 mit: 0.25 mip: 0.10
nuc: 0.03 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.04 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: cytoplasmic
28.0 %: nuclear
20.0 %: mitochondrial
8.0 %: plasma membrane
8.0 %: endoplasmic reticulum
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for SHB489 is cyt

5' end seq. ID SHB489F
5' end seq.
>SHB489F.Seq
ACTGTTGGCCTACTGGNATTTATTTAATTTCAATTAAATTATTTAAACACATACACAAAA
AAAAAAATAATATNGATAAACGCTTCATCAAAATTATAATTTAATCTATAAAGACCATAT
TTTATTTATTTATTNAATTTTTTATTTTCTATTTATTTATTTATTCAAATTTTTTTTTTT
TNAATTTTAAATAATTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 216
3' end seq. ID SHB489Z
3' end seq.
>SHB489Z.Seq
NNNNNNNNNNCACCAACTGCTTTCTTCTATGATGCTTCTCCATTAATTATGAGTATTTGG
ACTGTACCAATCGTTGTAAAAGATCCAATCATTTTCATTCTCGTCGGTATGATTCCTGTA
ATGGTGTTACCAAGAGTCATTCAATATATGATTCTTAGAGCCAAGAGACCTTATGAAGCC
GGTAAGAGTGGTCCATCACTTTGGGTAGAAGCTACTGATCTTTGGAGAGCTGAACAAACT
TTCTTTGGTTTTGCTGGTACTTATATTTCATCATGGAGAGAAGGTTCCGCTTCAATCGTT
AAACTTCTTAAAGCTAGAAAGATTAGTCGTCATAAGTTAGCCATGTGGAATTGGAAGAGA
GATTTCGTAAAGAAACCAGTAGTTTGTGAAGTTTTCCGTCAAACTAAATTGGTCAATGAA
AATGATAATGCTCAAGAATCAAGTGGTAAACATAAGGCTGGAACAATCTTTCCGTACTTC
AAACAAAGAATCTGATACCATTAAAAATTCAAGACTTTTCCTTCCAAATATTATCCTCTT
TGTTGTTAATATCTTGGCTATGATGAGTGCTGTACTTAGATTTAATTGTTTCCAAAATGA
TATGTGGCTTTTGGTTGTCGTAGCTGGTTTCTCTTTCTCTACCTTATGGCATTTATGGTC
TTTCATTCCAATGGCTCTTCGTCAAAGTGAAAAACAA
Length of 3' end seq. 697
Connected seq. ID SHB489P
Connected seq.
>SHB489P.Seq
ACTGTTGGCCTACTGGNATTTATTTAATTTCAATTAAATTATTTAAACACATACACAAAA
AAAAAAATAATATNGATAAACGCTTCATCAAAATTATAATTTAATCTATAAAGACCATAT
TTTATTTATTTATTNAATTTTTTATTTTCTATTTATTTATTTATTCAAATTTTTTTTTTT
TNAATTTTAAATAATTAAAAAAAAAA----------CACCAACTGCTTTCTTCTATGATG
CTTCTCCATTAATTATGAGTATTTGGACTGTACCAATCGTTGTAAAAGATCCAATCATTT
TCATTCTCGTCGGTATGATTCCTGTAATGGTGTTACCAAGAGTCATTCAATATATGATTC
TTAGAGCCAAGAGACCTTATGAAGCCGGTAAGAGTGGTCCATCACTTTGGGTAGAAGCTA
CTGATCTTTGGAGAGCTGAACAAACTTTCTTTGGTTTTGCTGGTACTTATATTTCATCAT
GGAGAGAAGGTTCCGCTTCAATCGTTAAACTTCTTAAAGCTAGAAAGATTAGTCGTCATA
AGTTAGCCATGTGGAATTGGAAGAGAGATTTCGTAAAGAAACCAGTAGTTTGTGAAGTTT
TCCGTCAAACTAAATTGGTCAATGAAAATGATAATGCTCAAGAATCAAGTGGTAAACATA
AGGCTGGAACAATCTTTCCGTACTTCAAACAAAGAATCTGATACCATTAAAAATTCAAGA
CTTTTCCTTCCAAATATTATCCTCTTTGTTGTTAATATCTTGGCTATGATGAGTGCTGTA
CTTAGATTTAATTGTTTCCAAAATGATATGTGGCTTTTGGTTGTCGTAGCTGGTTTCTCT
TTCTCTACCTTATGGCATTTATGGTCTTTCATTCCAATGGCTCTTCGTCAAAGTGAAAAA
CAA
Length of connected seq. 893
Full length Seq ID -
Full length Seq. -
Length of full length seq. -