SHB457
Library SH
(Link to library)
Clone ID SHB457
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID SHB457P
(Link to Original site)
Representative DNA sequence
>SHB457 (SHB457Q) /CSM/SH/SHB4-C/SHB457Q.Seq.d/
CTGTTGGCCTACTGGNAAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTC
TTTTTAAAGTTTAAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAA
AAAAAAAXXXXXXXXXXCAGAGAGACTATATGAAGAAATTCATAATTCCAATTTGAATAA
AGCAGTTCAAGAGGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTG
TAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATG
AACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCG
ATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTG
CTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAAC
AATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAG
GACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTA
TCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATG
CTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAA
ATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACC
AAATTAAAAATCAANTAAAAAATATTCAAACATTATCNNCAAATCCAAGAACAACAAGAT
AAATTAAATCAAGTAAAAAATCAACTATATTAGAACAAGTACAAAATCAA
sequence update 2002.10.25
Translated Amino Acid sequence
llaywxiinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---ERLYEEIHNSNLNKAVQEG*rn*kttkw*wftcckls*dcnsngkc*k**nyq*trc
h*tsstftty*kw*ryr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*re*rrtifk
*kfttt**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknstrerccll
e*c*ksst*igc*ig*k**tresr*efssrettis*pn*ksxkkysniixksknnkin*i
k*kinyirtstks


Translated Amino Acid sequence (All Frames)
Frame A:
llaywxiinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---qrdymkkfiipi*ikqfkraeeierqqngngspavnshkivtqmgnvenneitneqd
aieqaqhlqriengedideyeaaqhevafldeneqdaaklqnemdqlellleeneeeqfs
nknlqqlnenenqqqqqgqqqvqatnveqqiveqlkvikefqrqdqqkkqkiqqendavy
lsdvekaqleldaelaknnkqenqdenlvqekqqspdqiknqxkniqtlsxnprttr*ik
sskkstileqvqnq

Frame B:
cwptgk**iyyqitifsflsf*slnnrnnkn*y*kkgtlkkk---

---reti*rns*fqfe*sssrglkklkdnkmvmvhll*tlirl*lkwemlkimklpmnkm
plnklniynvlkmvkismsmklpnmklpf*mkmnkmllnykmkwtn*nsylkrmkknnfq
ikiynnlmrmkinnnnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfnkrtmlst
*vmlkklnlnwmlnwlkiinkrikmri*fkrnnnlltklkix*kifkhyxqiqeqqdkln
qvknqly*nkyki

Frame C:
vgllxnnkftik*lfflfflfkv*iieiikinikkker*kk---

---ERLYEEIHNSNLNKAVQEG*rn*kttkw*wftcckls*dcnsngkc*k**nyq*trc
h*tsstftty*kw*ryr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*re*rrtifk
*kfttt**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknstrerccll
e*c*ksst*igc*ig*k**tresr*efssrettis*pn*ksxkkysniixksknnkin*i
k*kinyirtstks

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHB457 (SHB457Q) /CSM/SH/SHB4-C/SHB457Q.Seq.d/ 765 0.0
AHQ546 (AHQ546Q) /CSM/AH/AHQ5-B/AHQ546Q.Seq.d/ 765 0.0
AHF785 (AHF785Q) /CSM/AH/AHF7-D/AHF785Q.Seq.d/ 765 0.0
AHE624 (AHE624Q) /CSM/AH/AHE6-A/AHE624Q.Seq.d/ 765 0.0
CHS435 (CHS435Q) /CSM/CH/CHS4-B/CHS435Q.Seq.d/ 759 0.0
AHK635 (AHK635Q) /CSM/AH/AHK6-B/AHK635Q.Seq.d/ 759 0.0
CHR687 (CHR687Q) /CSM/CH/CHR6-D/CHR687Q.Seq.d/ 751 0.0
SHL866 (SHL866Q) /CSM/SH/SHL8-C/SHL866Q.Seq.d/ 749 0.0
SHL857 (SHL857Q) /CSM/SH/SHL8-C/SHL857Q.Seq.d/ 749 0.0
SHL828 (SHL828Q) /CSM/SH/SHL8-B/SHL828Q.Seq.d/ 749 0.0

own update 2004. 5.12
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds. 654 0.0 6
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 127 4e-25 1
AX458543|AX458543.1 Sequence 89 from Patent WO0246454. 34 0.076 4
AL356122|AL356122.9 Human DNA sequence from clone RP11-61P22 on chromosome 6. 40 0.084 6
AL672188|AL672188.6 Mouse DNA sequence from clone RP23-53B2 on chromosome X. 36 0.22 7
DT633626|DT633626.1 EST1148557 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFW90 3' end, mRNA sequence. 48 0.32 1
DT364098|DT364098.1 JGI_ANNN9278.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN9278 3', mRNA sequence. 48 0.32 1
DT347978|DT347978.1 JGI_CAAX10802.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX10802 5', mRNA sequence. 48 0.32 1
DT309975|DT309975.1 JGI_CAAX1517.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 5', mRNA sequence. 48 0.32 1
DT309974|DT309974.1 JGI_CAAX1517.rev CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 3', mRNA sequence. 48 0.32 1
dna update 2005.12.24
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags... 262 5e-74
(Q54F33) RecName: Full=Uncharacterized protein DDB_G0291143; 36 1.9
AP004317_15(AP004317|pid:none) Oryza sativa Japonica Group genom... 35 2.4
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c... 35 2.4
AJ969441_1(AJ969441|pid:none) Trypanosoma cruzi garp gene for gl... 35 2.4
AE016819_111(AE016819|pid:none) Ashbya gossypii (= Eremothecium ... 33 9.3

protein update 2009. 4.15
PSORT

psg: 0.33 gvh: 0.03 alm: 0.75 top: 0.53 tms: 0.00 mit: 0.29 mip: 0.03
nuc: 0.12 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: nuclear
28.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: plasma membrane

>> prediction for SHB457 is nuc

5' end seq. ID SHB457F
5' end seq.
>SHB457F.Seq
CTGTTGGCCTACTGGNAAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTC
TTTTTAAAGTTTAAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAA
AAAAAAANNNNNNNNNN
Length of 5' end seq. 137
3' end seq. ID SHB457Z
3' end seq.
>SHB457Z.Seq
NNNNNNNNNNCAGAGAGACTATATGAAGAAATTCATAATTCCAATTTGAATAAAGCAGTT
CAAGAGGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTC
TCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGA
TGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTA
TGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATT
ACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTC
AAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACA
ACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGA
ATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTA
CTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAA
ACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAA
AAATCAANTAAAAAATATTCAAACATTATCNNCAAATCCAAGAACAACAAGATAAATTAA
ATCAAGTAAAAAATCAACTATATTAGAACAAGTACAAAATCAA
Length of 3' end seq. 763
Connected seq. ID SHB457P
Connected seq.
>SHB457P.Seq
CTGTTGGCCTACTGGNAAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTC
TTTTTAAAGTTTAAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAA
AAAAAAA----------CAGAGAGACTATATGAAGAAATTCATAATTCCAATTTGAATAA
AGCAGTTCAAGAGGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTG
TAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATG
AACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCG
ATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTG
CTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAAC
AATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAG
GACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTA
TCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATG
CTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAA
ATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACC
AAATTAAAAATCAANTAAAAAATATTCAAACATTATCNNCAAATCCAAGAACAACAAGAT
AAATTAAATCAAGTAAAAAATCAACTATATTAGAACAAGTACAAAATCAA
Length of connected seq. 880
Full length Seq ID -
Full length Seq. -
Length of full length seq. -