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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHB434
Library SH
(Link to library)
Clone ID SHB434
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12649-1|Contig-U16394-1
Original site URL
Representative seq. ID SHB434P
(Link to Original site)
Representative DNA sequence 
>SHB434 (SHB434Q) /CSM/SH/SHB4-B/SHB434Q.Seq.d/
CTGTTGGCCTACTGGNAATTAAAACCAACAATAGCAATAATAATTATAATAATAATAAAT
AATAATAATAATAATAACAATAAAATAGTAACACCAATAAATAATAATATTAATAATAAT
AATAATAATAATAATAATAATAATAAAATAAAAAATATAATAATAATAATAGTAATAATA
GTAATAATAATAATAAAATAATAATAATAGAAATAATTTCAATTTAAAAAATAAATAAAA
TAAAANGAGGAAAAAATAAAAAAAAAAATAAATTTTTTTTTTAAAAAATTAAAATTTTAA
AAAAAAAAXXXXXXXXXXGACTCATTGTATCATGTAATGAACACCAAAAAGTATGACATT
GGTTGGGACAGATTCTTTCAATTCACCATGCAAATGACATTGGGTGTACAGTGTCTTCAC
AATTGGACACCTCAAATTGTACACAGAGACTTTAAGAGTTTAAATCTTTTGGTCAATGAA
GATTGGGAATGCAAAGTTTCAGATTTTGGTCTTAGTCGTTTTAATACCGCCGATAATTTA
GAAACACTCAGTAAGATTCGTGGTACCTTTGCCTATTGTTCACCTGAAGTCGCCGTAGGT
AATGGTAGTCTCTACACTACCAAATCTGATATCTACAGTATTGGTATCGTCTTTTGGGAA
TTAGTAACTCGTGTTATCAATGGTGAATACTCTCGTCCCTACAGTGAATATTCTCACATC
AAAATGGACTTT
sequence update 2002.10.25
Translated Amino Acid sequence 
vgllxiktnnsnnnynnnk******q*nsntnk**y************nkkynnnnsnns
nnnnkiiiieiisi*kinkikxgknkkknkfff*KIKILKKK---

---DSLYHVMNTKKYDIGWDRFFQFTMQMTLGVQCLHNWTPQIVHRDFKSLNLLVNEDWE
CKVSDFGLSRFNTADNLETLSKIRGTFAYCSPEVAVGNGSLYTTKSDIYSIGIVFWELVT
RVINGEYSRPYSEYSHIKMDF
Translated Amino Acid sequence (All Frames) 
Frame A:
llaywxlkptiaiiiiiiinnnnnnnnkivtpinnninnnnnnnnnnnkikniiiiivii
viiiik****k*fqfkk*ik*xeekikkkinfffkklkf*kk---

---DSLYHVMNTKKYDIGWDRFFQFTMQMTLGVQCLHNWTPQIVHRDFKSLNLLVNEDWE
CKVSDFGLSRFNTADNLETLSKIRGTFAYCSPEVAVGNGSLYTTKSDIYSIGIVFWELVT
RVINGEYSRPYSEYSHIKMDF

Frame B:
cwptgn*nqq*q**l****iiiiiitik**hq*iiiliiiiiiiiiiik*ki********
*****nnnnrnnfnlknk*nkxrkk*kkk*ifflkn*nfkkk---

---thcim**tpksmtlvgtdsfnspck*hwvysvftighlklytetlrv*ifwsmkign
akfqilvlvvlippii*khsvrfvvplpivhlksp*vmvvstlpnlistvlvssfgn**l
vlsmvntlvptvniltskwt

Frame C:
vgllxiktnnsnnnynnnk******q*nsntnk**y************nkkynnnnsnns
nnnnkiiiieiisi*kinkikxgknkkknkfff*KIKILKKK---

---livscnehqkv*hwlgqilsihhandigctvssqldtsnctqrl*efksfgq*rlgm
qsfrfws*sf*yrr*frntq*dswylcllft*srrr*w*slhyqi*ylqywyrllgisns
cyqw*ilsslq*ifshqngl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHB434 (SHB434Q) /CSM/SH/SHB4-B/SHB434Q.Seq.d/                        821   0.0
CHS225 (CHS225Q) /CSM/CH/CHS2-B/CHS225Q.Seq.d/                        821   0.0
SHF208 (SHF208Q) /CSM/SH/SHF2-A/SHF208Q.Seq.d/                        801   0.0
AHF423 (AHF423Q) /CSM/AH/AHF4-A/AHF423Q.Seq.d/                        799   0.0
SHE857 (SHE857Q) /CSM/SH/SHE8-C/SHE857Q.Seq.d/                        793   0.0
SHD120 (SHD120Q) /CSM/SH/SHD1-A/SHD120Q.Seq.d/                        787   0.0
CHP295 (CHP295Q) /CSM/CH/CHP2-D/CHP295Q.Seq.d/                        787   0.0
AHJ120 (AHJ120Q) /CSM/AH/AHJ1-A/AHJ120Q.Seq.d/                        728   0.0
SHK887 (SHK887Q) /CSM/SH/SHK8-D/SHK887Q.Seq.d/                        712   0.0
AHC678 (AHC678Q) /CSM/AH/AHC6-D/AHC678Q.Seq.d/                        698   0.0
own update 2002.10.15
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115604|AC115604.2 Dictyostelium discoideum chromosome 2 map 4354771-4414991 strain AX4, complete sequence.    50   2e-08  2
BG453581|BG453581.1 NF092A07LF1F1050 Developing leaf Medicago truncatula cDNA clone NF092A07LF 5', mRNA sequence.    48   0.26   1
BG453480|BG453480.1 NF092C08LF1F1055 Developing leaf Medicago truncatula cDNA clone NF092C08LF 5', mRNA sequence.    48   0.26   1
BF631769|BF631769.1 NF026A05DT1F1034 Drought Medicago truncatula cDNA clone NF026A05DT 5', mRNA sequence.    48   0.26   1
BF635836|BF635836.1 NF029H09DT1F1077 Drought Medicago truncatula cDNA clone NF029H09DT 5', mRNA sequence.    48   0.26   1
BF646211|BF646211.1 NF067F06EC1F1058 Elicited cell culture Medicago truncatula cDNA clone NF067F06EC 5', mRNA sequence.    48   0.26   1
DW018299|DW018299.1 EST1227260 MTY Medicago truncatula cDNA clone MTYB479, mRNA sequence.    48   0.26   1
AW685406|AW685406.1 NF028H12NR1F1000 Nodulated root Medicago truncatula cDNA clone NF028H12NR 5', mRNA sequence.    48   0.26   1
BF647893|BF647893.1 NF038B09EC1F1076 Elicited cell culture Medicago truncatula cDNA clone NF038B09EC 5', mRNA sequence.    48   0.26   1
BG646682|BG646682.1 EST508301 HOGA Medicago truncatula cDNA clone pHOGA-9D1 5' end, mRNA sequence.    48   0.26   1
dna update 2005.12.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54XX5) RecName: Full=Probable serine/threonine-protein kinase ...   293   4e-78
(Q54G28) RecName: Full=Probable tyrosine-protein kinase DDB_G029...   155   1e-36
(Q55GG4) RecName: Full=Probable serine/threonine-protein kinase ...   153   4e-36
(Q54HC6) RecName: Full=Ankyrin repeat-containing protein kinase ...   140   5e-32
(Q54RR9) RecName: Full=Probable serine/threonine-protein kinase ...   135   2e-30
(Q86HG9) RecName: Full=Probable serine/threonine-protein kinase ...    92   1e-17
(Q54H46) RecName: Full=Probable serine/threonine-protein kinase ...    91   3e-17
(Q54H45) RecName: Full=Probable serine/threonine-protein kinase ...    91   3e-17
AC159538_19(AC159538|pid:none) Medicago truncatula clone mth2-48...    91   5e-17
BT070386_1(BT070386|pid:none) Picea sitchensis clone WS02726_F21...    90   6e-17
protein update 2009. 4.15
PSORT 

 psg: 0.78  gvh: 0.44  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: cytoskeletal

>> prediction for SHB434 is cyt
5' end seq. ID SHB434F
5' end seq. 
>SHB434F.Seq
CTGTTGGCCTACTGGNAATTAAAACCAACAATAGCAATAATAATTATAATAATAATAAAT
AATAATAATAATAATAACAATAAAATAGTAACACCAATAAATAATAATATTAATAATAAT
AATAATAATAATAATAATAATAATAAAATAAAAAATATAATAATAATAATAGTAATAATA
GTAATAATAATAATAAAATAATAATAATAGAAATAATTTCAATTTAAAAAATAAATAAAA
TAAAANGAGGAAAAAATAAAAAAAAAAATAAATTTTTTTTTTAAAAAATTAAAATTTTAA
AAAAAAAANNNNNNNNNN
Length of 5' end seq. 318
3' end seq. ID SHB434Z
3' end seq. 
>SHB434Z.Seq
NNNNNNNNNNGACTCATTGTATCATGTAATGAACACCAAAAAGTATGACATTGGTTGGGA
CAGATTCTTTCAATTCACCATGCAAATGACATTGGGTGTACAGTGTCTTCACAATTGGAC
ACCTCAAATTGTACACAGAGACTTTAAGAGTTTAAATCTTTTGGTCAATGAAGATTGGGA
ATGCAAAGTTTCAGATTTTGGTCTTAGTCGTTTTAATACCGCCGATAATTTAGAAACACT
CAGTAAGATTCGTGGTACCTTTGCCTATTGTTCACCTGAAGTCGCCGTAGGTAATGGTAG
TCTCTACACTACCAAATCTGATATCTACAGTATTGGTATCGTCTTTTGGGAATTAGTAAC
TCGTGTTATCAATGGTGAATACTCTCGTCCCTACAGTGAATATTCTCACATCAAAATGGA
CTTT
Length of 3' end seq. 424
Connected seq. ID SHB434P
Connected seq. 
>SHB434P.Seq
CTGTTGGCCTACTGGNAATTAAAACCAACAATAGCAATAATAATTATAATAATAATAAAT
AATAATAATAATAATAACAATAAAATAGTAACACCAATAAATAATAATATTAATAATAAT
AATAATAATAATAATAATAATAATAAAATAAAAAATATAATAATAATAATAGTAATAATA
GTAATAATAATAATAAAATAATAATAATAGAAATAATTTCAATTTAAAAAATAAATAAAA
TAAAANGAGGAAAAAATAAAAAAAAAAATAAATTTTTTTTTTAAAAAATTAAAATTTTAA
AAAAAAAA----------GACTCATTGTATCATGTAATGAACACCAAAAAGTATGACATT
GGTTGGGACAGATTCTTTCAATTCACCATGCAAATGACATTGGGTGTACAGTGTCTTCAC
AATTGGACACCTCAAATTGTACACAGAGACTTTAAGAGTTTAAATCTTTTGGTCAATGAA
GATTGGGAATGCAAAGTTTCAGATTTTGGTCTTAGTCGTTTTAATACCGCCGATAATTTA
GAAACACTCAGTAAGATTCGTGGTACCTTTGCCTATTGTTCACCTGAAGTCGCCGTAGGT
AATGGTAGTCTCTACACTACCAAATCTGATATCTACAGTATTGGTATCGTCTTTTGGGAA
TTAGTAACTCGTGTTATCAATGGTGAATACTCTCGTCCCTACAGTGAATATTCTCACATC
AAAATGGACTTT
Length of connected seq. 722
Full length Seq ID -
Full length Seq. -
Length of full length seq. -