>SHB431 (SHB431Q) /CSM/SH/SHB4-B/SHB431Q.Seq.d/
CTGTTGGCCTACTGGNATTACAATCAAATAAATAATTTATATTAAAAAATGTCCAGNAGT
AATTCATATTTCATCTAATGAAGAATTAGATAAACATTTGCAAGCTGAAAGATTAGTGAT
TGACTTTAGTGCTGCATGGTGTGGTCCATGTAGAGCAATATCTCCGGTATTTGAAAAGCT
TTCAAACGAATTTGTAACATTTACATTCGTTCATGTTGACATTGATAAACTAAGTGGTCA
TCCAATAGTAAAAGAAATTAGAAGTGTTCCTACATTCTATTTTTACAGAAATGGAGCTAA
AGTATCAGAATTCAGTGGTGCCAATGAAGCAACTCTAAGAAGTACTCTAGAAGCAAACAA
ATAATTTTTTGTTAAATTAATAATTGTACAAAAAATGCAACAAATTAAATAAATAAAAAA
AAAAAAATAATTCNCAAATTATTTTATTTAATTTATNTTTTAAAAAAAAAAXXXXXXXXX
XATTACAATCAAATAAATAATTTATATTAAAAAATGTCCANAGTAATTCATATTTCATTT
AATGAAGAATTAGATAAACNTTTGCAAGCTGAAANATTAGTGATTGACTTTAGTGCTGCA
TGGTGTGGTCCATGTANAGCAANATNTCCGGTATTTGAAAAGCTTTCAAACGAATTTGTA
ACATTTACATTNGTTCATGTTGACATTGATAA

llaywxynqinnly*kmsxsnsyfi**rir*tfas*kisd*l*ccmvwsm*snisgi*ka
fkricniyirsc*h**tkwssnskrn*kcsyilflqkws*siriqwcq*snskkysrskq
iifc*innctknatn*INKKKKIIXKLFYLIYXLKKK---

---YNQINNLY*kmsxvihisfneeldkxlqaexlvidfsaawcgpcxaxxpvfeklsne
fvtftxvhvdid

Frame A:
llaywxynqinnly*kmsxsnsyfi**rir*tfas*kisd*l*ccmvwsm*snisgi*ka
fkricniyirsc*h**tkwssnskrn*kcsyilflqkws*siriqwcq*snskkysrskq
iifc*innctknatn*INKKKKIIXKLFYLIYXLKKK---

---itik*iiyikkcpx*fifhlmkn*inxcklkx**ltlvlhgvvhvxqxxrylksfqt
nl*hlhxfmltli

Frame B:
cwptgitik*iiyikkcpxvihissneeldkhlqaerlvidfsaawcgpcraispvfekl
snefvtftfvhvdidklsghpivkeirsvptfyfyrngakvsefsganeatlrstleank
*ffvkliivqkmqqik*ikkkk*fxnyfi*fxf*kk---

---lqsnk*filknvxsnsyfi**rir*tfas*xisd*l*ccmvwsmxsxxsgi*kafkr
icniyixsc*h**

Frame C:
vgllxlqsnk*filknvqx*fifhlmkn*inicklkd**ltlvlhgvvhveqylrylksf
qtnl*hlhsfmltlin*vviq**kklevflhsiftemelkyqnsvvpmkql*evl*kqtn
nflln**lykkcnklnk*kkknnsqiilfnlxfkkk---

---YNQINNLY*kmsxvihisfneeldkxlqaexlvidfsaawcgpcxaxxpvfeklsne
fvtftxvhvdid

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHB431 (SHB431Q) /CSM/SH/SHB4-B/SHB431Q.Seq.d/                        688   0.0
VSB292 (VSB292Q) /CSM/VS/VSB2-D/VSB292Q.Seq.d/                        652   0.0
AHG261 (AHG261Q) /CSM/AH/AHG2-C/AHG261Q.Seq.d/                        652   0.0
SSM341 (SSM341Q) /CSM/SS/SSM3-B/SSM341Q.Seq.d/                        650   0.0
VSC718 (VSC718Q) /CSM/VS/VSC7-A/VSC718Q.Seq.d/                        646   0.0
VSJ416 (VSJ416Q) /CSM/VS/VSJ4-A/VSJ416Q.Seq.d/                        644   0.0
VSA738 (VSA738Q) /CSM/VS/VSA7-B/VSA738Q.Seq.d/                        644   0.0
SSM584 (SSM584Q) /CSM/SS/SSM5-D/SSM584Q.Seq.d/                        644   0.0
AHQ590 (AHQ590Q) /CSM/AH/AHQ5-D/AHQ590Q.Seq.d/                        644   0.0
SSA493 (SSA493Q) /CSM/SS/SSA4-D/SSA493Q.Seq.d/                        642   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M91382|M91382.1 Dictyostelium discoideum thioredoxin (TRX2) mRNA, 5' end.   507   e-143  2
M91384|M91384.1 Dictyostelium discoideum thioredoxin (TRX1) mRNA, complete cds.   396   e-130  3
M91383|M91383.1 Dictyostelium discoideum thioredoxin (TRX3) mRNA, complete cds.   412   e-118  2
AC119905|AC119905.11 Mus musculus chromosome 17, clone RP24-238N14, complete sequence.    48   3e-06  2
AC169285|AC169285.1 Bos taurus clone CH240-241N16, *** SEQUENCING IN PROGRESS ***, 16 unordered pieces.    48   3e-06  3
BH157090|BH157090.1 ENTRQ45TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   3e-04  4
DU333926|DU333926.1 1098312068893 CHORI-243 Ovis aries genomic clone CH243-47K3, genomic survey sequence.    42   0.001  2
CN565100|CN565100.1 tag24e04.x1 Hydra EST -Kiel 1 Hydra magnipapillata cDNA 3', mRNA sequence.    50   0.008  2
AF538053|AF538053.1 Monosiga brevicollis mitochondrion, complete genome.    36   0.009  6
BZ465033|BZ465033.1 BONSC06TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONSC06, DNA sequence.    38   0.015  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P29447) RecName: Full=Thioredoxin-3;          Short=Trx-3;           181   2e-44
C46264(C46264) thioredoxin 3 - slime mold (Dictyostelium discoid...   178   1e-43
(P29446) RecName: Full=Thioredoxin-2;          Short=Trx-2; Flag...   176   4e-43
BC129794_1(BC129794|pid:none) Xenopus laevis hypothetical protei...    94   5e-18
BC166957_1(BC166957|pid:none) Xenopus tropicalis hypothetical pr...    92   1e-17
BC072884_1(BC072884|pid:none) Xenopus laevis MGC80314 protein, m...    91   3e-17
(Q9DGI3) RecName: Full=Thioredoxin;          Short=Trx;  &AF2936...    87   5e-16
FJ384985_1(FJ384985|pid:none) Bombina orientalis thioredoxin mRN...    85   2e-15
DQ215312_1(DQ215312|pid:none) Taeniopygia guttata clone 0058P004...    85   2e-15
(P08629) RecName: Full=Thioredoxin;          Short=Trx;  &A30006...    85   2e-15

 psg: 0.90  gvh: 0.29  alm: 0.57  top: 0.47  tms: 0.00  mit: 0.35  mip: 0.00
 nuc: 0.23  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 24.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for SHB431 is nuc

>SHB431F.Seq
CTGTTGGCCTACTGGNATTACAATCAAATAAATAATTTATATTAAAAAATGTCCAGNAGT
AATTCATATTTCATCTAATGAAGAATTAGATAAACATTTGCAAGCTGAAAGATTAGTGAT
TGACTTTAGTGCTGCATGGTGTGGTCCATGTAGAGCAATATCTCCGGTATTTGAAAAGCT
TTCAAACGAATTTGTAACATTTACATTCGTTCATGTTGACATTGATAAACTAAGTGGTCA
TCCAATAGTAAAAGAAATTAGAAGTGTTCCTACATTCTATTTTTACAGAAATGGAGCTAA
AGTATCAGAATTCAGTGGTGCCAATGAAGCAACTCTAAGAAGTACTCTAGAAGCAAACAA
ATAATTTTTTGTTAAATTAATAATTGTACAAAAAATGCAACAAATTAAATAAATAAAAAA
AAAAAAATAATTCNCAAATTATTTTATTTAATTTATNTTTTAAAAAAAAAANNNNNNNNN
N

>SHB431Z.Seq
NNNNNNNNNNATTACAATCAAATAAATAATTTATATTAAAAAATGTCCANAGTAATTCAT
ATTTCATTTAATGAAGAATTAGATAAACNTTTGCAAGCTGAAANATTAGTGATTGACTTT
AGTGCTGCATGGTGTGGTCCATGTANAGCAANATNTCCGGTATTTGAAAAGCTTTCAAAC
GAATTTGTAACATTTACATTNGTTCATGTTGACATTGATAA

>SHB431P.Seq
CTGTTGGCCTACTGGNATTACAATCAAATAAATAATTTATATTAAAAAATGTCCAGNAGT
AATTCATATTTCATCTAATGAAGAATTAGATAAACATTTGCAAGCTGAAAGATTAGTGAT
TGACTTTAGTGCTGCATGGTGTGGTCCATGTAGAGCAATATCTCCGGTATTTGAAAAGCT
TTCAAACGAATTTGTAACATTTACATTCGTTCATGTTGACATTGATAAACTAAGTGGTCA
TCCAATAGTAAAAGAAATTAGAAGTGTTCCTACATTCTATTTTTACAGAAATGGAGCTAA
AGTATCAGAATTCAGTGGTGCCAATGAAGCAACTCTAAGAAGTACTCTAGAAGCAAACAA
ATAATTTTTTGTTAAATTAATAATTGTACAAAAAATGCAACAAATTAAATAAATAAAAAA
AAAAAAATAATTCNCAAATTATTTTATTTAATTTATNTTTTAAAAAAAAAA---------
-ATTACAATCAAATAAATAATTTATATTAAAAAATGTCCANAGTAATTCATATTTCATTT
AATGAAGAATTAGATAAACNTTTGCAAGCTGAAANATTAGTGATTGACTTTAGTGCTGCA
TGGTGTGGTCCATGTANAGCAANATNTCCGGTATTTGAAAAGCTTTCAAACGAATTTGTA
ACATTTACATTNGTTCATGTTGACATTGATAA