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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHB426
Library SH
(Link to library)
Clone ID SHB426
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11129-1
Original site URL
Representative seq. ID SHB426P
(Link to Original site)
Representative DNA sequence 
>SHB426 (SHB426Q) /CSM/SH/SHB4-B/SHB426Q.Seq.d/
CTGTTGGCCTACTGGNATCATTGTTAATAGCAGAAGNAAAAATGGCAACAAAAAATACAT
CTCCTTATGAGATTGAATATGCAAAGAGTGATAGATCAACATGTTCAACCTGTCAAAGAG
GCATTAATAAAGAAGCAGTTCGTATTGGTTATAAAACAAAATCAAAACACTTTGATGGAA
TGGATGTATCATGGCATCATTTAAAATGTAAATGTCCACAAGTACCATCATTTACAGATT
TAATTCACTGGGAATACCTTCGTTGGGAAGACCAATTATCAATTAAAACAACTTATTTTT
CATCTGAAAAGTATGATCCAAAATCAGCATCAGAGGTACAAAGAGAGAAATATTTAAAGG
CATTATGGGAAGTTAAAGATAGTATTGCCGATAACTTGAAGGGACCAGCAATTAAAAACA
TCATTCAATATAATAAAGGTTATGTTGATAAGGTATCACCAGTTCATTTACTTCATACTC
TCTCTGATTGGATGTTAAAAGGTCGTCCAGXXXXXXXXXXATCGATGTTGATATTGCCGC
TAATCTTAAGAAGCAAACTGAATCACTCGAGGGTAACATGATTGAAAATCAATATATTAC
ACTCAAAACCAAACTCACTCCCACTTGATAAAGATAGTGTAGTTTATAAAACCTTGGTAG
ATTATGTTGCCAATAGTCAAGATAAACAATTTAGAACCAATATCTGTGTTCAAGATATTC
TTTCACTTGAGAGAGAGAATGAAAGTGAACGTTTCACTCCTTGGGCAAAAGATAAGAATA
GATTACTCTTATGGCATGGTAGTAGGTTAACTAATTTCGTATCGATTGTCTCGCAGGGAT
TAAGAATTGCTCCACCATCTGCTCCAAAAACTGGTTACAGATTTGGTAAAGGTATTTATT
TTGCTGATTGTATTAGTAAATCATTCAGCTATTGTTTCACATCAAGTGATTGTCCAACTG
CACTTATGTTATTATGTGAAGTTTCACTTGGTGACATGAATGAATTGAAACATGATACCT
ATATGGAAGAGGCACCACATCCATTCCATAGTACAAAAGCTTTAGGTATGGCTGCTCCTC
ACAAAGATGGTAATCATCCTCTTTCTGATTCTGATGGTTTAGTAGTACCATTAGGTAAAA
TTTCAAAGACGGTCTCTCAACTTCATGTACTCACAATGAATTCATGTCTATAAAATNAAC
AAGTCAGAATCAAAACATCTTAGAGTT
sequence update 2002.10.25
Translated Amino Acid sequence 
VGLLXSLLIAEXKMATKNTSPYEIEYAKSDRSTCSTCQRGINKEAVRIGYKTKSKHFDGM
DVSWHHLKCKCPQVPSFTDLIHWEYLRWEDQLSIKTTYFSSEKYDPKSASEVQREKYLKA
LWEVKDSIADNLKGPAIKNIIQYNKGYVDKVSPVHLLHTLSDWMLKGRP---

---IDVDIAANLKKQTESLEGNMIENQYITLKTKLTPT**r*csl*nlgrlccq*sr*ti
*nqylcsrysft*ere*k*tfhslgkr*e*itlmaw**vn*fridclagikncsticskn
wlqiw*rylfc*ly**iiqllfhik*lsnctyvim*sftw*he*iet*ylygrgttsip*
yksfrygcssqrw*sssf*f*wfsstir*nfkdglstscthnefmsikxtsqnqnile
Translated Amino Acid sequence (All Frames) 
Frame A:
llaywxhc**qkxkwqqkihllmrlnmqrvidqhvqpvkealikkqfvlvikqnqntlme
wmyhgii*nvnvhkyhhlqi*ftgntfvgktnyqlkqlifhlksmiqnqhqrykerni*r
hygklkivlpit*rdqqlktsfniikvmliryhqfiyfilsligc*kvvq---

---IDVDIAANLKKQTESLEGNMIENQYITLKTKLTPT**r*csl*nlgrlccq*sr*ti
*nqylcsrysft*ere*k*tfhslgkr*e*itlmaw**vn*fridclagikncsticskn
wlqiw*rylfc*ly**iiqllfhik*lsnctyvim*sftw*he*iet*ylygrgttsip*
yksfrygcssqrw*sssf*f*wfsstir*nfkdglstscthnefmsikxtsqnqnile

Frame B:
cwptgiivnsrxkngnkkyisl*d*icke**inmfnlskrh**rsssywl*nkiktl*wn
gcimasfkm*mststiiyrfnslgipslgrpiin*nnlffi*kv*skisirgtkreifkg
imgs*r*ycr*legtsn*khhsi**rlc**gitssftsysl*ldvkrss---

---smlilplilrsklnhsrvt*lkinilhskpnslpldkdsvvyktlvdyvansqdkqf
rtnicvqdilslereneserftpwakdknrlllwhgsrltnfvsivsqglriappsapkt
gyrfgkgiyfadcisksfsycftssdcptalmllcevslgdmnelkhdtymeeaphpfhs
tkalgmaaphkdgnhplsdsdglvvplgkisktvsqlhvltmnscl*nxqvrikts*s

Frame C:
VGLLXSLLIAEXKMATKNTSPYEIEYAKSDRSTCSTCQRGINKEAVRIGYKTKSKHFDGM
DVSWHHLKCKCPQVPSFTDLIHWEYLRWEDQLSIKTTYFSSEKYDPKSASEVQREKYLKA
LWEVKDSIADNLKGPAIKNIIQYNKGYVDKVSPVHLLHTLSDWMLKGRP---

---rc*ycr*s*ean*itrg*hd*ksiyytqnqthshlikiv*fikpw*imlpivkinnl
episvfkiffhlrermkvnvsllgqkiridysygmvvg*lisyrlsrrd*ellhhllqkl
vtdlvkvfillivlvnhsaivshqvivqlhlcyyvkfhlvt*mn*nmipiwkrhhihsiv
qkl*vwllltkmviilflilmv**yh*vkfqrrslnfmysq*ihvykxnkseskhlrv
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHB426 (SHB426Q) /CSM/SH/SHB4-B/SHB426Q.Seq.d/                       2355   0.0
SHB222 (SHB222Q) /CSM/SH/SHB2-A/SHB222Q.Seq.d/                       1336   0.0
VHB303 (VHB303Q) /CSM/VH/VHB3-A/VHB303Q.Seq.d/                       1330   0.0
AHI282 (AHI282Q) /CSM/AH/AHI2-D/AHI282Q.Seq.d/                       1330   0.0
AHB712 (AHB712Q) /CSM/AH/AHB7-A/AHB712Q.Seq.d/                       1330   0.0
AHR444 (AHR444Q) /CSM/AH/AHR4-B/AHR444Q.Seq.d/                       1324   0.0
VHB869 (VHB869Q) /CSM/VH/VHB8-C/VHB869Q.Seq.d/                       1314   0.0
SHG306 (SHG306Q) /CSM/SH/SHG3-A/SHG306Q.Seq.d/                       1310   0.0
AHQ185 (AHQ185Q) /CSM/AH/AHQ1-D/AHQ185Q.Seq.d/                       1304   0.0
AHM188 (AHM188Q) /CSM/AH/AHM1-D/AHM188Q.Seq.d/                       1300   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AJ534948|AJ534948.1 Dictyostelium discoideum mRNA for NAD(+) ADP-ribosyltransferase-1A (adprt-1A gene).  1051   0.0    3
AJ520099|AJ520099.1 Dictyostelium discoideum mRNA for (ADP-ribosyl)transferase (adprt2  gene).    62   2e-14  3
AC132117|AC132117.3 Mus musculus BAC clone RP24-162P19 from 6, complete sequence.    38   0.34   4
CL958527|CL958527.1 OsIFCC001618 Oryza sativa Express Library Oryza sativa (indica cultivar-group) genomic, genomic survey sequence.    48   0.44   1
AC118364|AC118364.3 Rattus norvegicus clone CH230-325H3, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    40   0.58   5
BX936323|BX936323.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-213J22.    36   0.87   2
CR854911|CR854911.13 Zebrafish DNA sequence from clone DKEY-46O18 in linkage group 9.    36   0.87   2
AC021731|AC021731.3 Homo sapiens chromosome 11 clone RP11-693K15 map 11, WORKING DRAFT SEQUENCE, 13 unordered pieces.    36   0.89   2
AC010943|AC010943.3 Homo sapiens clone RP11-115E19, WORKING DRAFT SEQUENCE, 9 unordered pieces.    36   0.89   2
AP003715|AP003715.3 Homo sapiens genomic DNA, chromosome 11q clone:RP11-115E19.    36   0.89   2
dna update 2005.12.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X65497_1(X65497|pid:none) R.norvegicus mRNA for poly(ADP-ribose)...   163   1e-38
(P27008) RecName: Full=Poly [ADP-ribose] polymerase 1;          ...   163   1e-38
AK303340_1(AK303340|pid:none) Homo sapiens cDNA FLJ53442 complet...   162   3e-38
AK312339_1(AK312339|pid:none) Homo sapiens cDNA, FLJ92658, highl...   161   5e-38
J03473_1(J03473|pid:none) Human poly(ADP-ribose) synthetase mRNA...   161   5e-38
(Q9R152) RecName: Full=Poly [ADP-ribose] polymerase 1;          ...   161   5e-38
AB384394_1(AB384394|pid:none) Synthetic construct DNA, clone: pF...   161   5e-38
M17081_1(M17081|pid:none) Human placental poly(ADP-ribose) polym...   161   5e-38
M18112_1(M18112|pid:none) Human poly(ADP-ribose) polymerase mRNA...   161   5e-38
DQ891636_1(DQ891636|pid:none) Synthetic construct clone IMAGE:10...   161   5e-38
protein update 2009. 4.15
PSORT 

 psg: 0.75  gvh: 0.42  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SHB426 is cyt
5' end seq. ID SHB426F
5' end seq. 
>SHB426F.Seq
CTGTTGGCCTACTGGNATCATTGTTAATAGCAGAAGNAAAAATGGCAACAAAAAATACAT
CTCCTTATGAGATTGAATATGCAAAGAGTGATAGATCAACATGTTCAACCTGTCAAAGAG
GCATTAATAAAGAAGCAGTTCGTATTGGTTATAAAACAAAATCAAAACACTTTGATGGAA
TGGATGTATCATGGCATCATTTAAAATGTAAATGTCCACAAGTACCATCATTTACAGATT
TAATTCACTGGGAATACCTTCGTTGGGAAGACCAATTATCAATTAAAACAACTTATTTTT
CATCTGAAAAGTATGATCCAAAATCAGCATCAGAGGTACAAAGAGAGAAATATTTAAAGG
CATTATGGGAAGTTAAAGATAGTATTGCCGATAACTTGAAGGGACCAGCAATTAAAAACA
TCATTCAATATAATAAAGGTTATGTTGATAAGGTATCACCAGTTCATTTACTTCATACTC
TCTCTGATTGGATGTTAAAAGGTCGTCCAGNNNNNNNNNN
Length of 5' end seq. 520
3' end seq. ID SHB426Z
3' end seq. 
>SHB426Z.Seq
NNNNNNNNNNATCGATGTTGATATTGCCGCTAATCTTAAGAAGCAAACTGAATCACTCGA
GGGTAACATGATTGAAAATCAATATATTACACTCAAAACCAAACTCACTCCCACTTGATA
AAGATAGTGTAGTTTATAAAACCTTGGTAGATTATGTTGCCAATAGTCAAGATAAACAAT
TTAGAACCAATATCTGTGTTCAAGATATTCTTTCACTTGAGAGAGAGAATGAAAGTGAAC
GTTTCACTCCTTGGGCAAAAGATAAGAATAGATTACTCTTATGGCATGGTAGTAGGTTAA
CTAATTTCGTATCGATTGTCTCGCAGGGATTAAGAATTGCTCCACCATCTGCTCCAAAAA
CTGGTTACAGATTTGGTAAAGGTATTTATTTTGCTGATTGTATTAGTAAATCATTCAGCT
ATTGTTTCACATCAAGTGATTGTCCAACTGCACTTATGTTATTATGTGAAGTTTCACTTG
GTGACATGAATGAATTGAAACATGATACCTATATGGAAGAGGCACCACATCCATTCCATA
GTACAAAAGCTTTAGGTATGGCTGCTCCTCACAAAGATGGTAATCATCCTCTTTCTGATT
CTGATGGTTTAGTAGTACCATTAGGTAAAATTTCAAAGACGGTCTCTCAACTTCATGTAC
TCACAATGAATTCATGTCTATAAAATNAACAAGTCAGAATCAAAACATCTTAGAGTT
Length of 3' end seq. 717
Connected seq. ID SHB426P
Connected seq. 
>SHB426P.Seq
CTGTTGGCCTACTGGNATCATTGTTAATAGCAGAAGNAAAAATGGCAACAAAAAATACAT
CTCCTTATGAGATTGAATATGCAAAGAGTGATAGATCAACATGTTCAACCTGTCAAAGAG
GCATTAATAAAGAAGCAGTTCGTATTGGTTATAAAACAAAATCAAAACACTTTGATGGAA
TGGATGTATCATGGCATCATTTAAAATGTAAATGTCCACAAGTACCATCATTTACAGATT
TAATTCACTGGGAATACCTTCGTTGGGAAGACCAATTATCAATTAAAACAACTTATTTTT
CATCTGAAAAGTATGATCCAAAATCAGCATCAGAGGTACAAAGAGAGAAATATTTAAAGG
CATTATGGGAAGTTAAAGATAGTATTGCCGATAACTTGAAGGGACCAGCAATTAAAAACA
TCATTCAATATAATAAAGGTTATGTTGATAAGGTATCACCAGTTCATTTACTTCATACTC
TCTCTGATTGGATGTTAAAAGGTCGTCCAG----------ATCGATGTTGATATTGCCGC
TAATCTTAAGAAGCAAACTGAATCACTCGAGGGTAACATGATTGAAAATCAATATATTAC
ACTCAAAACCAAACTCACTCCCACTTGATAAAGATAGTGTAGTTTATAAAACCTTGGTAG
ATTATGTTGCCAATAGTCAAGATAAACAATTTAGAACCAATATCTGTGTTCAAGATATTC
TTTCACTTGAGAGAGAGAATGAAAGTGAACGTTTCACTCCTTGGGCAAAAGATAAGAATA
GATTACTCTTATGGCATGGTAGTAGGTTAACTAATTTCGTATCGATTGTCTCGCAGGGAT
TAAGAATTGCTCCACCATCTGCTCCAAAAACTGGTTACAGATTTGGTAAAGGTATTTATT
TTGCTGATTGTATTAGTAAATCATTCAGCTATTGTTTCACATCAAGTGATTGTCCAACTG
CACTTATGTTATTATGTGAAGTTTCACTTGGTGACATGAATGAATTGAAACATGATACCT
ATATGGAAGAGGCACCACATCCATTCCATAGTACAAAAGCTTTAGGTATGGCTGCTCCTC
ACAAAGATGGTAATCATCCTCTTTCTGATTCTGATGGTTTAGTAGTACCATTAGGTAAAA
TTTCAAAGACGGTCTCTCAACTTCATGTACTCACAATGAATTCATGTCTATAAAATNAAC
AAGTCAGAATCAAAACATCTTAGAGTT
Length of connected seq. 1217
Full length Seq ID -
Full length Seq. -
Length of full length seq. -