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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHB379
Library SH
(Link to library)
Clone ID SHB379
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13024-1|Contig-U16344-1
Original site URL
Representative seq. ID SHB379P
(Link to Original site)
Representative DNA sequence 
>SHB379 (SHB379Q) /CSM/SH/SHB3-D/SHB379Q.Seq.d/
ACTGTTGGCCTACTGGNATTCAATCAAACAAACAAAAAACAACAATTTAAAAAAACAATA
ATTTATAGTAAAGTAAAAACAATTAAAGAATCACTAATTGTTTTTTTCTCCTCCTCACTA
TAAATTCCAATATTTTTTTTTAAATTAATTTCCAGCTTTTCTGTTTTTTTACACAATCAC
AACCAACCCTATATCATTACTACCAACCCTATACCATTACAATCTTATTTATTAAATAAT
TATTATTTGTTGTATTATTTTAGTGTATATTTGTTGATTTAATATTTATTAGCAAGTAAC
AAACAAAAAAAAAAXXXXXXXXXXCTCAACATTGTTGGTAACGTTAAAATGGCCGCAACT
GCAACTGTCTATGCAAACATTGATGCTTTAATGTCAATCACCACCTCAACCCAAACCTCA
ATCTCTCAATCATCAACCAAGACTGTCAACGGTAAGACCACCACTCAATCATCATCAAGC
TCATCATCATCCATCTCTAAACAATTCGTTCCAATGATCGTTTGTTCAGGTACTGCTGAT
GTTGCTGGTAACCTCAATGTCGTTGCCTCAGAAGCCAATCAAGCTAAAATTGCCTCTGGT
ACTGTATTCAAATTCATCTCAGCCCCAGTTGTTAAAGGTAATGTCTCCTCAGTTAGCTGT
CTCACCTCAAGCACTGCTGCTGCTGCTCAACAAGCTGCCGGTGCTGCTGCTGCTGCTGCC
CAAAAAGCTGCTATGGCTGCTGCCTCTAAAGTTTGGTCAATTGTAAATTCACCATGTAAC
TGTGAATGTGGATTGAAGAGATTATAAATTGATTCAACTCCTCCTCTCCAATGACAATAA
ATTAAAATAATACAACTCATTCTTATTTTTCTTTATTCNAACCAATGTATTGTCAATNAC
TTATTAACTTTTTNAACACACCCTTTTCAATT
sequence update 2002.10.25
Translated Amino Acid sequence 
tvgllxfnqtnkkqqfkktiiyskvktikeslivffsssl*ipifffklissfsvflhnh
nqpyiittnpiplqsyllnnyyllyyfsvylli*YLLASNKQKK---

---LNIVGNVKMAATATVYANIDALMSITTSTQTSISQSSTKTVNGKTTTQSSSSSSSSI
SKQFVPMIVCSGTADVAGNLNVVASEANQAKIASGTVFKFISAPVVKGNVSSVSCLTSST
AAAAQQAAGAAAAAAQKAAMAAASKVWSIVNSPCNCECGLKRL*idstpplq*q*ikiiq
liliflysnqcivnxlltfxthpfq
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllxfnqtnkkqqfkktiiyskvktikeslivffsssl*ipifffklissfsvflhnh
nqpyiittnpiplqsyllnnyyllyyfsvylli*YLLASNKQKK---

---LNIVGNVKMAATATVYANIDALMSITTSTQTSISQSSTKTVNGKTTTQSSSSSSSSI
SKQFVPMIVCSGTADVAGNLNVVASEANQAKIASGTVFKFISAPVVKGNVSSVSCLTSST
AAAAQQAAGAAAAAAQKAAMAAASKVWSIVNSPCNCECGLKRL*idstpplq*q*ikiiq
liliflysnqcivnxlltfxthpfq

Frame B:
llaywxsikqtknnnlkkq*fivk*kqlknh*lffspphykfqyffln*fpaflffytit
tnpisllptlyhynliy*iiiicciilvyic*fniy*qvtnkkk---

---stllvtlkwpqlqlsmqtlml*cqsppqpkpqslnhqprlstvrpplnhhqahhhps
lnnsfq*sfvqvllmllvtsmslpqkpiklklplvlysnssqpqllkvmspqlavspqal
llllnklpvlllllpkkllwllplkfgql*ihhvtvnvd*rdykliqlllsndnklk*yn
sflfffixtnvlsxty*lfxhtlfn

Frame C:
cwptgiqsnkqktti*knnnl**sknn*ritncffllltinsniff*infqlfcfftqsq
ptlyhyyqpytitilfik*llfvvlf*cifvdlifisk*qtkkk---

---qhcw*r*ngrncnclckh*cfnvnhhlnpnlnlsiinqdcqr*dhhsiiikliiihl
*tirsndrlfryc*ccw*pqcrclrsqss*nclwyciqihlspsc*r*clls*lshlkhc
cccstscrccccccpkscygccl*slvnckftm*l*mwieeiin*fnssspmtin*nntt
hsyfslfxpmycqxlinfxntpfsi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLH545 (SLH545Q) /CSM/SL/SLH5-B/SLH545Q.Seq.d/                        690   0.0
SLE412 (SLE412Q) /CSM/SL/SLE4-A/SLE412Q.Seq.d/                        690   0.0
SLE342 (SLE342Q) /CSM/SL/SLE3-B/SLE342Q.Seq.d/                        690   0.0
SLE320 (SLE320Q) /CSM/SL/SLE3-A/SLE320Q.Seq.d/                        690   0.0
SLE216 (SLE216Q) /CSM/SL/SLE2-A/SLE216Q.Seq.d/                        690   0.0
SLB147 (SLB147Q) /CSM/SL/SLB1-B/SLB147Q.Seq.d/                        690   0.0
SLA101 (SLA101Q) /CSM/SL/SLA1-A/SLA101Q.Seq.d/                        690   0.0
SHL563 (SHL563Q) /CSM/SH/SHL5-C/SHL563Q.Seq.d/                        690   0.0
SHL325 (SHL325Q) /CSM/SH/SHL3-B/SHL325Q.Seq.d/                        690   0.0
SHL307 (SHL307Q) /CSM/SH/SHL3-A/SHL307Q.Seq.d/                        690   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U83087|U83087.1 Dictyostelium discoideum rsc12 mRNA, partial cds.   690   0.0    3
AJ297856|AJ297856.1 Lucilia sericata partial bcd gene for bicoid protein.    50   0.084  1
AC162431|AC162431.1 Papio hamadryas clone RP41-121N17, WORKING DRAFT SEQUENCE.    48   0.33   1
AC148223|AC148223.1 Colobus guereza clone CH272-19E23, WORKING DRAFT SEQUENCE, 4 ordered pieces.    48   0.33   1
AC127176|AC127176.3 Rattus norvegicus clone CH230-267P11, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    48   0.33   1
AL395211|AL395211.1 T7 end of clone AR0AA022B11 of library AR0AA from strain CBS 732 of Zygosaccharomyces rouxii.    48   0.33   1
AC110319|AC110319.5 Rattus norvegicus clone CH230-234D19, WORKING DRAFT SEQUENCE, 2 unordered pieces.    48   0.33   1
AL393003|AL393003.1 T7 end of clone AR0AA008B11 of library AR0AA from strain CBS 732 of Zygosaccharomyces rouxii.    48   0.33   1
AC164878|AC164878.2 Mus musculus BAC clone RP23-364G24 from chromosome 13, complete sequence.    48   0.33   1
AC022143|AC022143.7 Homo sapiens chromosome 19 clone CTD-2378H7, complete sequence.    48   0.33   1
dna update 2005.12.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U83087_1(U83087|pid:none) Dictyostelium discoideum rsc12 mRNA, p...   199   8e-50
AY530539_1(AY530539|pid:none) Mimulus ringens deficiens (DEF) mR...    34   7.6
AY524011_1(AY524011|pid:none) Paulownia tomentosa deficiens (DEF...    33   9.9
protein update 2008.11.12
PSORT 

 psg: 0.69  gvh: 0.54  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SHB379 is cyt
5' end seq. ID SHB379F
5' end seq. 
>SHB379F.Seq
ACTGTTGGCCTACTGGNATTCAATCAAACAAACAAAAAACAACAATTTAAAAAAACAATA
ATTTATAGTAAAGTAAAAACAATTAAAGAATCACTAATTGTTTTTTTCTCCTCCTCACTA
TAAATTCCAATATTTTTTTTTAAATTAATTTCCAGCTTTTCTGTTTTTTTACACAATCAC
AACCAACCCTATATCATTACTACCAACCCTATACCATTACAATCTTATTTATTAAATAAT
TATTATTTGTTGTATTATTTTAGTGTATATTTGTTGATTTAATATTTATTAGCAAGTAAC
AAACAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 324
3' end seq. ID SHB379Z
3' end seq. 
>SHB379Z.Seq
NNNNNNNNNNCTCAACATTGTTGGTAACGTTAAAATGGCCGCAACTGCAACTGTCTATGC
AAACATTGATGCTTTAATGTCAATCACCACCTCAACCCAAACCTCAATCTCTCAATCATC
AACCAAGACTGTCAACGGTAAGACCACCACTCAATCATCATCAAGCTCATCATCATCCAT
CTCTAAACAATTCGTTCCAATGATCGTTTGTTCAGGTACTGCTGATGTTGCTGGTAACCT
CAATGTCGTTGCCTCAGAAGCCAATCAAGCTAAAATTGCCTCTGGTACTGTATTCAAATT
CATCTCAGCCCCAGTTGTTAAAGGTAATGTCTCCTCAGTTAGCTGTCTCACCTCAAGCAC
TGCTGCTGCTGCTCAACAAGCTGCCGGTGCTGCTGCTGCTGCTGCCCAAAAAGCTGCTAT
GGCTGCTGCCTCTAAAGTTTGGTCAATTGTAAATTCACCATGTAACTGTGAATGTGGATT
GAAGAGATTATAAATTGATTCAACTCCTCCTCTCCAATGACAATAAATTAAAATAATACA
ACTCATTCTTATTTTTCTTTATTCNAACCAATGTATTGTCAATNACTTATTAACTTTTTN
AACACACCCTTTTCAATT
Length of 3' end seq. 618
Connected seq. ID SHB379P
Connected seq. 
>SHB379P.Seq
ACTGTTGGCCTACTGGNATTCAATCAAACAAACAAAAAACAACAATTTAAAAAAACAATA
ATTTATAGTAAAGTAAAAACAATTAAAGAATCACTAATTGTTTTTTTCTCCTCCTCACTA
TAAATTCCAATATTTTTTTTTAAATTAATTTCCAGCTTTTCTGTTTTTTTACACAATCAC
AACCAACCCTATATCATTACTACCAACCCTATACCATTACAATCTTATTTATTAAATAAT
TATTATTTGTTGTATTATTTTAGTGTATATTTGTTGATTTAATATTTATTAGCAAGTAAC
AAACAAAAAAAAAA----------CTCAACATTGTTGGTAACGTTAAAATGGCCGCAACT
GCAACTGTCTATGCAAACATTGATGCTTTAATGTCAATCACCACCTCAACCCAAACCTCA
ATCTCTCAATCATCAACCAAGACTGTCAACGGTAAGACCACCACTCAATCATCATCAAGC
TCATCATCATCCATCTCTAAACAATTCGTTCCAATGATCGTTTGTTCAGGTACTGCTGAT
GTTGCTGGTAACCTCAATGTCGTTGCCTCAGAAGCCAATCAAGCTAAAATTGCCTCTGGT
ACTGTATTCAAATTCATCTCAGCCCCAGTTGTTAAAGGTAATGTCTCCTCAGTTAGCTGT
CTCACCTCAAGCACTGCTGCTGCTGCTCAACAAGCTGCCGGTGCTGCTGCTGCTGCTGCC
CAAAAAGCTGCTATGGCTGCTGCCTCTAAAGTTTGGTCAATTGTAAATTCACCATGTAAC
TGTGAATGTGGATTGAAGAGATTATAAATTGATTCAACTCCTCCTCTCCAATGACAATAA
ATTAAAATAATACAACTCATTCTTATTTTTCTTTATTCNAACCAATGTATTGTCAATNAC
TTATTAACTTTTTNAACACACCCTTTTCAATT
Length of connected seq. 922
Full length Seq ID -
Full length Seq. -
Length of full length seq. -