AFI793
Library AF
(Link to library)
Clone ID AFI793
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11694-1
Original site URL
Representative seq. ID AFI793F
(Link to Original site)
Representative DNA sequence
>AFI793 (AFI793Q) /CSM/AF/AFI7-D/AFI793Q.Seq.d/
AATTGTATAGATNAGGTTCAGTTGGCTTCGTTTCAAAGAGTGGTGGTTTGTCCAATGAAA
TGTATAATGTACTCTCAAGATGTACCGATGGTATCTATGAAGGTATCGCAATTGGAGGTG
ATGCTTTCCCTGGCTCAACACTCACAGACCATGCCCTACGTTATGAGAAATTGCCAGAGG
TTCAAATGATTGTTATATTGGGTGAGTTGGGTGGATGGGACGAGTATGGAATTGTGGAGG
CATTGAAAAAGGGTGAAATTACAAAACCAATTTGTGCATGGGTATCTGGTACTGTTGCAA
AGATTTTCCCAACCGAAGTACAATTTGGTCATGCAGGTGCAAAATCTGGTGGTGAAACTG
AATCTGCCGATGCAAAGAATAAAGCTTTACGTGAGGCTGGTGCAGTTGTACCAACTTCTT
TTGAAGATTTCTCAAATGTTATTGCCGCTACCTATGCCAAACTTCAATCAAAGGGTTTGG
TTAAACCAGTTGAAGAACCAACACCACCTGAATTACCATTAGATTTCAAGACTGCAGTTA
AGGCTGGTAAAGTTAGAAAGCCAACATCAATTATCTCTACAATTTGTGATGATCGTGGTG
ATGAACTTTCCTAXXXXXXXXXX
sequence update 2001. 6. 2
Translated Amino Acid sequence
LYRXGSVGFVSKSGGLSNEMYNVLSRCTDGIYEGIAIGGDAFPGSTLTDHALRYEKLPEV
QMIVILGELGGWDEYGIVEALKKGEITKPICAWVSGTVAKIFPTEVQFGHAGAKSGGETE
SADAKNKALREAGAVVPTSFEDFSNVIAATYAKLQSKGLVKPVEEPTPPELPLDFKTAVK
AGKVRKPTSIISTICDDRGDELS---


Translated Amino Acid sequence (All Frames)
Frame A:
ncidxvqlasfqrvvvcpmkcimysqdvpmvsmkvsqlevmlslaqhsqtmpyvmrncqr
fk*llywvswvdgtsmelwrh*krvklqnqfvhgylvllqrfsqpkynlvmqvqnlvvkl
nlpmqriklyvrlvqlyqlllkisqmllplpmpnfnqrvwlnqlknqhhlnyh*isrlql
rlvklesqhqlslqfvmivvmnfp---


Frame B:
iv*xrfswlrfkewwfvq*nv*ctlkmyrwyl*ryrnwr*cfpwlnthrpcptl*eiarg
sndcyig*vgwmgrvwncggiekg*nyktnlcmgiwycckdfpnrstiwscrckiww*n*
icrcke*sft*gwcsctnff*rflkcycrylcqtsikgfg*ts*rtntt*itirfqdcs*
gw*s*kaninylynl**sw**tf---


Frame C:
LYRXGSVGFVSKSGGLSNEMYNVLSRCTDGIYEGIAIGGDAFPGSTLTDHALRYEKLPEV
QMIVILGELGGWDEYGIVEALKKGEITKPICAWVSGTVAKIFPTEVQFGHAGAKSGGETE
SADAKNKALREAGAVVPTSFEDFSNVIAATYAKLQSKGLVKPVEEPTPPELPLDFKTAVK
AGKVRKPTSIISTICDDRGDELS---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFI793 (AFI793Q) /CSM/AF/AFI7-D/AFI793Q.Seq.d/ 1209 0.0
VFK504 (VFK504Q) /CSM/VF/VFK5-A/VFK504Q.Seq.d/ 178 7e-44
VHB747 (VHB747Q) /CSM/VH/VHB7-B/VHB747Q.Seq.d/ 56 7e-07
VFN326 (VFN326Q) /CSM/VF/VFN3-B/VFN326Q.Seq.d/ 36 0.61
SFI171 (SFI171Q) /CSM/SF/SFI1-C/SFI171Q.Seq.d/ 36 0.61
SFF306 (SFF306Q) /CSM/SF/SFF3-A/SFF306Q.Seq.d/ 36 0.61
SFE244 (SFE244Q) /CSM/SF/SFE2-B/SFE244Q.Seq.d/ 36 0.61
CHP873 (CHP873Q) /CSM/CH/CHP8-D/CHP873Q.Seq.d/ 36 0.61
CHM745 (CHM745Q) /CSM/CH/CHM7-B/CHM745Q.Seq.d/ 36 0.61
CHK163 (CHK163Q) /CSM/CH/CHK1-C/CHK163Q.Seq.d/ 36 0.61

own update 2004. 7.12
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CF604135|CF604135.1 BACCA01_001462 Grape Berry pSPORT1 Library Vitis vinifera cDNA 5', mRNA sequence. 58 2e-13 3
CB980354|CB980354.1 CAB70002_IIbF_E09 Cabernet Sauvignon Berry Post-Veraison - CAB7 Vitis vinifera cDNA clone CAB70002_IIbF_E09 5', mRNA sequence. 58 7e-13 3
CF608926|CF608926.1 GERMO01_000641 Grape Shoot pSPORT1 Library Vitis vinifera cDNA 5', mRNA sequence. 58 8e-12 2
CN879578|CN879578.1 010419AASA004895HT (AASA) Royal Gala 10 DAFB fruit Malus x domestica cDNA clone AASA004895, mRNA sequence. 58 2e-09 2
AJ769149|AJ769149.1 Populus euphratica EST, clone P0000100025H01F1. 56 2e-09 2
CD574299|CD574299.1 UCRPT01_05_C05_T3 Poncirus trifoliata CTV-challenged cDNA library - UCR Poncirus trifoliata cDNA clone UCRPT01_05_C05, mRNA sequence. 60 5e-08 2
CF272928|CF272928.1 EST2490 Zea mays sperm cell cDNA library Zea mays cDNA clone Zmsp6837 5' similar to ATP citrate lyase, mRNA sequence. 58 6e-08 3
CA071659|CA071659.1 SCBGAM1089B11.g AM1 Saccharum officinarum cDNA clone SCBGAM1089B11 5', mRNA sequence. 64 1e-07 2
CA289719|CA289719.1 SCAGFL8008C06.g FL8 Saccharum officinarum cDNA clone SCAGFL8008C06 5', mRNA sequence. 64 1e-07 2
CA075867|CA075867.1 SCJLAM1064C05.g AM1 Saccharum officinarum cDNA clone SCJLAM1064C05 5', mRNA sequence. 64 2e-07 2
dna update 2004. 9.23
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54YA0) RecName: Full=Probable ATP-citrate synthase; E... 339 4e-92
AF290958_1(AF290958|pid:none) Capsicum annuum ATP:citrate lyase ... 239 4e-62
EF571302_1(EF571302|pid:none) Glycyrrhiza uralensis ATP citrate ... 239 6e-62
AP002883_22(AP002883|pid:none) Oryza sativa Japonica Group genom... 238 8e-62
AJ344107_1(AJ344107|pid:none) Lupinus albus mRNA for ATP citrate... 238 1e-61
AJ243483_1(AJ243483|pid:none) Cyanophora paradoxa mRNA for ATP c... 237 2e-61
AC020580_2(AC020580|pid:none) Arabidopsis thaliana chromosome 3 ... 235 6e-61
AB023034_12(AB023034|pid:none) Arabidopsis thaliana genomic DNA,... 234 1e-60
AJ243439_1(AJ243439|pid:none) Cyanophora paradoxa acly gene, exo... 226 5e-58
DQ853419_2(DQ853419|pid:none) Desulfurobacterium thermolithotrop... 207 2e-52
protein update 2009. 4.23
PSORT

psg: 0.88 gvh: 0.43 alm: 0.44 top: 0.47 tms: 0.00 mit: 0.30 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
32.0 %: cytoplasmic
16.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for AFI793 is nuc

5' end seq. ID AFI793F
5' end seq.
>AFI793F.Seq
AATTGTATAGATNAGGTTCAGTTGGCTTCGTTTCAAAGAGTGGTGGTTTGTCCAATGAAA
TGTATAATGTACTCTCAAGATGTACCGATGGTATCTATGAAGGTATCGCAATTGGAGGTG
ATGCTTTCCCTGGCTCAACACTCACAGACCATGCCCTACGTTATGAGAAATTGCCAGAGG
TTCAAATGATTGTTATATTGGGTGAGTTGGGTGGATGGGACGAGTATGGAATTGTGGAGG
CATTGAAAAAGGGTGAAATTACAAAACCAATTTGTGCATGGGTATCTGGTACTGTTGCAA
AGATTTTCCCAACCGAAGTACAATTTGGTCATGCAGGTGCAAAATCTGGTGGTGAAACTG
AATCTGCCGATGCAAAGAATAAAGCTTTACGTGAGGCTGGTGCAGTTGTACCAACTTCTT
TTGAAGATTTCTCAAATGTTATTGCCGCTACCTATGCCAAACTTCAATCAAAGGGTTTGG
TTAAACCAGTTGAAGAACCAACACCACCTGAATTACCATTAGATTTCAAGACTGCAGTTA
AGGCTGGTAAAGTTAGAAAGCCAACATCAATTATCTCTACAATTTGTGATGATCGTGGTG
ATGAACTTTCCTA----------
Length of 5' end seq. 613
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -