>SHB288 (SHB288Q) /CSM/SH/SHB2-D/SHB288Q.Seq.d/
CTGTTGGCCTACTGGTTAAATGAATCAAATATAACAATTGGTTTATTAGCATTATTAGAT
GAAGATGTTGTACCACTTGATTATAATTCAGTTATTCCAAAGNAGAAAAGGAGGAAAATC
CACTGAAATTTCAAGTGAAAAGGTAATGGCATTAAATTCAATTACAAAGTTAATTCAAAT
TTCAGTAACACCATCTTCTTTGGAGAATACAATTTGGATATTGGCATCATCATTACACTC
TAAACAAGCTTCAAAAGAAACATTACCAGATGATTGGCAAGGTAAAGTTGCTCAAAATCC
AATAATAACCTGTCAAATCAAAGATGGTTGTAAGAAAGAGTTTACCAATGCTTTCCATTC
ACTCTTGGCAACTCTTAGTGAAAAAATTAAAAATGGTAATTACTCTGATTCAATCGTTTT
AAATTCCCTCTTTTGTTTCTCAATTTTCCTTTTACCTGACGATATTAGATTTGTGCAAAA
TAGTGAAATCTTCCCAATGATTTCAAAGATTTTATCACAAATGCATTCAAGTAGCAATAA
TAATGATTTACCATCAACTTTAAATACTCCACAAAAAGTTGGXXXXXXXXXX

cwptg*mnqi*qlvy*hy*MKMLYHLIIIQLFQXRKGGKSTEISSEKVMALNSITKLIQI
SVTPSSLENTIWILASSLHSKQASKETLPDDWQGKVAQNPIITCQIKDGCKKEFTNAFHS
LLATLSEKIKNGNYSDSIVLNSLFCFSIFLLPDDIRFVQNSEIFPMISKILSQMHSSSNN
NDLPSTLNTPQKV---

Frame A:
llaywlnesnitigllalldedvvpldynsvipkxkrrkih*nfk*kgngikfnykvnsn
fsntiffgeynldigiiitl*tsfkrnitr*lar*scsksnnnlsnqrwl*ervyqcfpf
tlgns**kn*kw*ll*fnrfkfpllflnfpft*ry*icak**nlpndfkdfitnafk*q*
**ftinfkystks---


Frame B:
cwptg*mnqi*qlvy*hy*MKMLYHLIIIQLFQXRKGGKSTEISSEKVMALNSITKLIQI
SVTPSSLENTIWILASSLHSKQASKETLPDDWQGKVAQNPIITCQIKDGCKKEFTNAFHS
LLATLSEKIKNGNYSDSIVLNSLFCFSIFLLPDDIRFVQNSEIFPMISKILSQMHSSSNN
NDLPSTLNTPQKV---


Frame C:
vgllvk*ikynnwfisiir*rcctt*l*fsyskxekeenplkfqvkr*wh*iqlqs*fkf
q*hhllwriqfgywhhhytlnklqkkhyqmigkvkllkiq**pvkskmvvrkslpmlsih
swqllvkklkmvitliqsf*ipsfvsqfsfyltildlckivkssq*fqrfyhkciqvaii
miyhql*ilhkkl---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHB288 (SHB288Q) /CSM/SH/SHB2-D/SHB288Q.Seq.d/                        747   0.0
VFL482 (VFL482Q) /CSM/VF/VFL4-D/VFL482Q.Seq.d/                         42   0.009
CHK706 (CHK706Q) /CSM/CH/CHK7-A/CHK706Q.Seq.d/                         42   0.009
CHC229 (CHC229Q) /CSM/CH/CHC2-B/CHC229Q.Seq.d/                         42   0.009
CHA412 (CHA412Q) /CSM/CH/CHA4-A/CHA412Q.Seq.d/                         42   0.009
CFC769 (CFC769Q) /CSM/CF/CFC7-C/CFC769Q.Seq.d/                         42   0.009
VHL442 (VHL442Q) /CSM/VH/VHL4-B/VHL442Q.Seq.d/                         40   0.037
VHB830 (VHB830Q) /CSM/VH/VHB8-B/VHB830Q.Seq.d/                         40   0.037
VFN411 (VFN411Q) /CSM/VF/VFN4-A/VFN411Q.Seq.d/                         40   0.037
VFC470 (VFC470Q) /CSM/VF/VFC4-C/VFC470Q.Seq.d/                         40   0.037

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CJ440216|CJ440216.1 Macaca fascicularis mRNA, clone: QccE-17525, 5' end, expressed in cerebellum cortex.    48   0.21   1
CJ466999|CJ466999.1 Macaca fascicularis mRNA, clone: QnpA-16426, 5' end, expressed in brain parietal lobe.    48   0.21   1
CJ481434|CJ481434.1 Macaca fascicularis mRNA, clone: QtrA-17110, 5' end, expressed in brain temporal lobe.    36   0.57   2
CJ479005|CJ479005.1 Macaca fascicularis mRNA, clone: QtrA-14210, 5' end, expressed in brain temporal lobe.    34   1.5    2
AL440987|AL440987.1 T3 end of clone BD0AA016A10 of library BD0AA from strain CBS 94 of  Candida tropicalis.    42   1.8    2
CJ459137|CJ459137.1 Macaca fascicularis mRNA, clone: QmoA-11271, 5' end, expressed in medulla oblongata.    44   3.2    1
CJ445293|CJ445293.1 Macaca fascicularis mRNA, clone: QflA-10430, 5' end, expressed in brain frontal lobe.    44   3.2    1
CJ492910|CJ492910.1 Macaca fascicularis mRNA, clone: QtsA-20916, 5' end, expressed in testis.    44   3.2    1
DR143187|DR143187.1 49075685 Drosophila pseudoobscura embryonic cDNA library Drosophila pseudoobscura cDNA clone O1 3', mRNA sequence.    44   3.2    1
AC161339|AC161339.2 Rhinolophus ferrumequinum clone VMRC7-397B16, WORKING DRAFT SEQUENCE, 3 ordered pieces.    44   3.2    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(O75592) RecName: Full=Probable E3 ubiquitin-protein ligase MYCB...    46   8e-04
AF075587_1(AF075587|pid:none) Homo sapiens protein associated wi...    45   0.002
BC059257_1(BC059257|pid:none) Mus musculus MYC binding protein 2...    44   0.002
AY325887_1(AY325887|pid:none) Mus musculus highwire (Phr1) mRNA,...    44   0.004
AL359257_2(AL359257|pid:none) Human DNA sequence from clone RP11...    40   0.045
(Q9NB71) RecName: Full=E3 ubiquitin-protein ligase highwire;    ...    40   0.059
AF262977_1(AF262977|pid:none) Drosophila melanogaster highwire (...    40   0.059
AE014188_321(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    36   0.65
CU207366_2008(CU207366|pid:none) Gramella forsetii KT0803 comple...    35   1.5
(P33453) RecName: Full=RNA-directed RNA polymerase;          Sho...    35   1.9

 psg: 0.91  gvh: 0.36  alm: 0.34  top: 0.50  tms: 0.00  mit: 0.32  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 24.0 %: nuclear
	 20.0 %: cytoskeletal
	 16.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SHB288 is cyt

>SHB288F.Seq
CTGTTGGCCTACTGGTTAAATGAATCAAATATAACAATTGGTTTATTAGCATTATTAGAT
GAAGATGTTGTACCACTTGATTATAATTCAGTTATTCCAAAGNAGAAAAGGAGGAAAATC
CACTGAAATTTCAAGTGAAAAGGTAATGGCATTAAATTCAATTACAAAGTTAATTCAAAT
TTCAGTAACACCATCTTCTTTGGAGAATACAATTTGGATATTGGCATCATCATTACACTC
TAAACAAGCTTCAAAAGAAACATTACCAGATGATTGGCAAGGTAAAGTTGCTCAAAATCC
AATAATAACCTGTCAAATCAAAGATGGTTGTAAGAAAGAGTTTACCAATGCTTTCCATTC
ACTCTTGGCAACTCTTAGTGAAAAAATTAAAAATGGTAATTACTCTGATTCAATCGTTTT
AAATTCCCTCTTTTGTTTCTCAATTTTCCTTTTACCTGACGATATTAGATTTGTGCAAAA
TAGTGAAATCTTCCCAATGATTTCAAAGATTTTATCACAAATGCATTCAAGTAGCAATAA
TAATGATTTACCATCAACTTTAAATACTCCACAAAAAGTTGGNNNNNNNNNN