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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHB269
Library SH
(Link to library)
Clone ID SHB269
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16508-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SHB269 (SHB269Q) /CSM/SH/SHB2-C/SHB269Q.Seq.d/
XXXXXXXXXXGTCTTTATCACATCCATTACTCCCAATGTTTACAACCANTCNNCAATNTT
CAAACGATTGGAATTNTCAATATCAAGGTGTTTACTCACCATTGNCTTCAGCCTCACCTT
TACCAAATGGTTTAAAGATTCAAACTNTACAATGGTTAGATAATCAAGATAATNCCATAC
TTTTNNGTATTGAAAATATTTATCAAATTGATGGTCAANATTCACAAGATCCGCNAACTA
TCACTTTAGATCTTTCAACTATCTTTTCAACAATTACAATC
sequence update 2002. 9.10
Translated Amino Acid sequence 
---SLSHPLLPMFTTXXQXSNDWNXQYQGVYSPLXSASPLPNGLKIQTXQWLDNQDNXIL
XXIENIYQIDGQXSQDPXTITLDLSTIFSTITI
Translated Amino Acid sequence (All Frames) 
Frame A:
---SLSHPLLPMFTTXXQXSNDWNXQYQGVYSPLXSASPLPNGLKIQTXQWLDNQDNXIL
XXIENIYQIDGQXSQDPXTITLDLSTIFSTITI


Frame B:
---lyhihysqclqpxxnxqtigixnikvfthhxlqphlyqmv*rfklyng*iikixpyf
xvlkifiklmvxihkirxlsl*ifqlsfqqlq


Frame C:
---fitsitpnvynxsxxfkrlexsisrclltixfsltftkwfkdsnxtmvr*sr*xhtf
xy*kylsn*wsxftrsanyhfrsfnylfnnyn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHB269 (SHB269Q) /CSM/SH/SHB2-C/SHB269Q.Seq.d/                        466   e-131
CHH456 (CHH456Q) /CSM/CH/CHH4-C/CHH456Q.Seq.d/                        466   e-131
AHQ284 (AHQ284Q) /CSM/AH/AHQ2-D/AHQ284Q.Seq.d/                        466   e-131
VHJ346 (VHJ346Q) /CSM/VH/VHJ3-B/VHJ346Q.Seq.d/                        464   e-130
VHI208 (VHI208Q) /CSM/VH/VHI2-A/VHI208Q.Seq.d/                        464   e-130
VHG861 (VHG861Q) /CSM/VH/VHG8-C/VHG861Q.Seq.d/                        464   e-130
VHG683 (VHG683Q) /CSM/VH/VHG6-D/VHG683Q.Seq.d/                        464   e-130
SHG389 (SHG389Q) /CSM/SH/SHG3-D/SHG389Q.Seq.d/                        464   e-130
SHA292 (SHA292Q) /CSM/SH/SHA2-D/SHA292Q.Seq.d/                        464   e-130
CHL168 (CHL168Q) /CSM/CH/CHL1-C/CHL168Q.Seq.d/                        464   e-130
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M82822|M82822.1 Dictyostelium discoideum alpha-mannosidase (manA) gene, complete cds.   440   e-120  1
AC154590|AC154590.2 Mus musculus BAC clone RP23-368L2 from chromosome 14, complete sequence.    44   1.5    1
AC099115|AC099115.6 Rattus norvegicus clone CH230-171M20, WORKING DRAFT SEQUENCE, 3 unordered pieces.    32   2.7    2
AJ928006|AJ928006.1 Theileria annulata EST, clone tam012h05_q1k.    42   5.8    1
W29673|W29673.1 mc05g11.r1 Soares mouse p3NMF19.5 Mus musculus cDNA clone IMAGE:338084 5' similar to gb:J04973 UBIQUINOL-CYTOCHROME C REDUCTASE CORE PROTEIN 2 PRECURSOR (HUMAN);, mRNA sequence.    42   5.8    1
AC026242|AC026242.3 Homo sapiens clone RP11-24G10, WORKING DRAFT SEQUENCE, 18 unordered pieces.    42   5.8    1
AX489471|AX489471.1 Sequence 6771 from Patent WO02053728.          42   5.8    1
AC018561|AC018561.3 Homo sapiens clone RP11-1N8, WORKING DRAFT SEQUENCE, 15 unordered pieces.    42   5.8    1
AC168821|AC168821.1 Strongylocentrotus purpuratus clone R3-13E24, WORKING DRAFT SEQUENCE, 38 unordered pieces.    42   5.8    1
AR546513|AR546513.1 Sequence 1644 from patent US 6747137.          42   5.8    1
dna update 2005.12.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M82822_1(M82822|pid:none) Dictyostelium discoideum alpha-mannosi...   160   2e-38
(P34098) RecName: Full=Lysosomal alpha-mannosidase;          Sho...   160   2e-38
protein update 2009. 1.15
PSORT 

 psg: 0.91  gvh: 0.50  alm: 0.44  top: 0.37  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 24.0 %: cytoplasmic
	 12.0 %: extracellular, including cell wall
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SHB269 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SHB269Z
3' end seq. 
>SHB269Z.Seq
NNNNNNNNNNGTCTTTATCACATCCATTACTCCCAATGTTTACAACCANTCNNCAATNTT
CAAACGATTGGAATTNTCAATATCAAGGTGTTTACTCACCATTGNCTTCAGCCTCACCTT
TACCAAATGGTTTAAAGATTCAAACTNTACAATGGTTAGATAATCAAGATAATNCCATAC
TTTTNNGTATTGAAAATATTTATCAAATTGATGGTCAANATTCACAAGATCCGCNAACTA
TCACTTTAGATCTTTCAACTATCTTTTCAACAATTACAATC
Length of 3' end seq. 281
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -