AFI784
Library AF
(Link to library)
Clone ID AFI784
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16170-1
Original site URL
Representative seq. ID AFI784F
(Link to Original site)
Representative DNA sequence
>AFI784 (AFI784Q) /CSM/AF/AFI7-D/AFI784Q.Seq.d/
ATTAAGGCAATAATAATAATAATAGAATTCAATCACAACTACAAAAAAAAACAAAAAACA
CATTGTATAAATATTTAAAATTGGAGAATCTTCAATTTACAAACAATAATTCAAAACTCA
TATAAATAAATATAAATATATAAAATCATACTTACATATAAAATAACACAATAAAATGGG
TCAATTACTTAGTTTTATCAATGGAAATGATCACACTGAACAAATTTTCATAGATTTCGA
ACATGCTCAACCATCAGACGACGAAAGAGAACTTCATAAAACAGTTAATGAAGTTTTAAT
TAGAGGTCCAGCTATCATCGATAAACTTTTAGCCTATGCAGGTTGTAATGAATTCATTAG
AAGAGCAATTACCAATCCAGGTCCAGAAACTGAAGATGCTGCATGGGAAGCTGTACTCCC
ATCAGTTGATCAACTCCAAGAATTCTACGATTTCTCTTTAGAATTGGAAACTTGTTTCCC
AAAACTTTTAGTTGCTCTTTATAAAAACGATCCAAAAGCATCTTTATCAAACCAACAAGC
CCTCGCTAAGCAACTTGCCGATATCTTTGATTTTGTTTTGAAATTCGATGACGCAAXXXX
XXXXXX
sequence update 2001. 6. 2
Translated Amino Acid sequence
lrq*****nsitttkknkkhiv*ifkigessiykq*fkthinkykyiksylhik*HNKMG
QLLSFINGNDHTEQIFIDFEHAQPSDDERELHKTVNEVLIRGPAIIDKLLAYAGCNEFIR
RAITNPGPETEDAAWEAVLPSVDQLQEFYDFSLELETCFPKLLVALYKNDPKASLSNQQA
LAKQLADIFDFVLKFDDA---


Translated Amino Acid sequence (All Frames)
Frame A:
ikaiiiiiefnhnykkkqkthcini*nwrifnlqtiiqnsyk*i*iykiiltykitq*ng
sit*fyqwk*sh*tnfhrfrtcstirrrkrts*ns**sfn*rssyhr*tfslcrl**ih*
ksnyqsrsrn*rccmgsctpis*stprilrflfrignlfpktfscsl*krsksifikpts
pr*atcryl*fcfeir*r---


Frame B:
lrq*****nsitttkknkkhiv*ifkigessiykq*fkthinkykyiksylhik*HNKMG
QLLSFINGNDHTEQIFIDFEHAQPSDDERELHKTVNEVLIRGPAIIDKLLAYAGCNEFIR
RAITNPGPETEDAAWEAVLPSVDQLQEFYDFSLELETCFPKLLVALYKNDPKASLSNQQA
LAKQLADIFDFVLKFDDA---


Frame C:
*gnnnnnriqsqlqkktkntlykylklenlqftnnnskli*inini*nhtyi*nntikwv
nylvlsmemitlnkfs*isnmlnhqttkenfikqlmkf*levqlssinf*pmqvvmnsle
eqlpiqvqklkmlhgklyshqlinsknstisl*nwklvsqnf*llfiktiqkhlyqtnkp
slsnlpislilf*nsmt---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFI784 (AFI784Q) /CSM/AF/AFI7-D/AFI784Q.Seq.d/ 831 0.0
VFK893 (VFK893Q) /CSM/VF/VFK8-D/VFK893Q.Seq.d/ 823 0.0
VFK424 (VFK424Q) /CSM/VF/VFK4-A/VFK424Q.Seq.d/ 823 0.0
VFD481 (VFD481Q) /CSM/VF/VFD4-D/VFD481Q.Seq.d/ 823 0.0
FC-BS22 (FC-BS22Q) /CSM/FC/FC-BS/FC-BS22Q.Seq.d/ 823 0.0
AFL681 (AFL681Q) /CSM/AF/AFL6-D/AFL681Q.Seq.d/ 823 0.0
AFJ640 (AFJ640Q) /CSM/AF/AFJ6-B/AFJ640Q.Seq.d/ 823 0.0
VFI134 (VFI134Q) /CSM/VF/VFI1-B/VFI134Q.Seq.d/ 817 0.0
VSD389 (VSD389Q) /CSM/VS/VSD3-D/VSD389Q.Seq.d/ 803 0.0
AFM110 (AFM110Q) /CSM/AF/AFM1-A/AFM110Q.Seq.d/ 781 0.0

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC115607|AC115607.2 Dictyostelium discoideum chromosome 2 map 4559693-4624405 strain AX4, complete sequence. 452 0.0 6
CR762444|CR762444.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-247J6. 38 9e-06 6
AC115594|AC115594.2 Dictyostelium discoideum chromosome 2 map 4071862-4101005 strain AX4, complete sequence. 36 2e-04 6
AC110244|AC110244.5 Mus musculus chromosome 5 clone RP23-247E10 map 5, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces. 48 0.001 5
BX901908|BX901908.8 Zebrafish DNA sequence from clone DKEY-268B12 in linkage group 4. 40 0.001 5
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 42 0.002 4
BX323992|BX323992.9 Zebrafish DNA sequence from clone DKEY-185B14 in linkage group 12. 34 0.002 7
AC133410|AC133410.2 Rattus norvegicus clone CH230-22L13, WORKING DRAFT SEQUENCE, 2 unordered pieces. 34 0.003 7
BX571717|BX571717.6 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 36 0.003 7
BX936422|BX936422.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 36 0.004 8
dna update 2004. 9.23
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q8T2H0) RecName: Full=Protein FAM49 homolog; &AC115607_2(AC115... 280 2e-74
BC066542_1(BC066542|pid:none) Danio rerio zgc:76981, mRNA (cDNA ... 108 1e-22
BT046597_1(BT046597|pid:none) Salmo salar clone ssal-eve-540-327... 106 4e-22
BT045029_1(BT045029|pid:none) Salmo salar clone ssal-rgf-510-107... 103 3e-21
BT056500_1(BT056500|pid:none) Salmo salar clone ssal-eve-562-166... 102 8e-21
BT056927_1(BT056927|pid:none) Salmo salar clone ssal-eve-556-188... 102 8e-21
BC059337_1(BC059337|pid:none) Xenopus laevis hypothetical protei... 100 2e-20
(Q921M7) RecName: Full=Protein FAM49B; &AK028062_1(AK028062|pid... 100 2e-20
BC135124_1(BC135124|pid:none) Xenopus tropicalis hypothetical pr... 100 2e-20
(Q2KJI3) RecName: Full=Protein FAM49B; &(Q9NUQ9) RecName: Fu &A... 100 2e-20
protein update 2009. 4.23
PSORT

psg: 0.89 gvh: 0.40 alm: 0.43 top: 0.17 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: extracellular, including cell wall
8.0 %: vacuolar
4.0 %: mitochondrial
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for AFI784 is cyt

5' end seq. ID AFI784F
5' end seq.
>AFI784F.Seq
ATTAAGGCAATAATAATAATAATAGAATTCAATCACAACTACAAAAAAAAACAAAAAACA
CATTGTATAAATATTTAAAATTGGAGAATCTTCAATTTACAAACAATAATTCAAAACTCA
TATAAATAAATATAAATATATAAAATCATACTTACATATAAAATAACACAATAAAATGGG
TCAATTACTTAGTTTTATCAATGGAAATGATCACACTGAACAAATTTTCATAGATTTCGA
ACATGCTCAACCATCAGACGACGAAAGAGAACTTCATAAAACAGTTAATGAAGTTTTAAT
TAGAGGTCCAGCTATCATCGATAAACTTTTAGCCTATGCAGGTTGTAATGAATTCATTAG
AAGAGCAATTACCAATCCAGGTCCAGAAACTGAAGATGCTGCATGGGAAGCTGTACTCCC
ATCAGTTGATCAACTCCAAGAATTCTACGATTTCTCTTTAGAATTGGAAACTTGTTTCCC
AAAACTTTTAGTTGCTCTTTATAAAAACGATCCAAAAGCATCTTTATCAAACCAACAAGC
CCTCGCTAAGCAACTTGCCGATATCTTTGATTTTGTTTTGAAATTCGATGACGCAA----
------
Length of 5' end seq. 596
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -