SHB246
Library SH
(Link to library)
Clone ID SHB246
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16580-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SHB246 (SHB246Q) /CSM/SH/SHB2-B/SHB246Q.Seq.d/
XXXXXXXXXXAATAGTGNAGGTGCTACTGGTGGTAATAGTGGTGCTGCANCTGGAGCAAA
TAGTGGTGCTGCAACTGGAGCAAATAGTGGCGCTGCAACTGGAGCAAATAGTGGTGCTGC
AACTGGTGCAAATAGTGGAAACAATGCCGCTGTAACTGGTGCTGCAAATGGAAATAATGG
CGCTGCAGCTGGAGCAAATAGTGGTGCCGCAACTGCTGCAAATAGTGGTGCCGCAACTGC
TGCAAATAGTGGTGCCGCAACTGCTGCAAATAGAGGAAACAATGCCGCTGCAACTGGTGC
TGCAAATGGAAATAATGGCGCTGCAGCTGGAGCAAATAGTGGTGCCGCAACTGCTGCAAA
TAGTGGTGCTGCAAATAGTGGTGCTGCAACTGCTGCAAATAGTGGTGCTGCAGCTGGAGC
AAATAGTGGTGCTGCAACTGCTGCAAATAGTGGCGCTGCAACTGCTGCAAGTGGTGGAAA
TGGTGCAAGTGGTGCTGCAAACCCTGGTTCAATAGTAACTCCAAATGATCAAAATGTTTC
TCCATTATCGAACTCTGATGCTGCAGCAACCGCAGCATCAACTACAGGCAGAAACCCAAG
AAATCCAACAAGTAGAGCTCCAACGGTCACACCAACGCCAACCTCTTCAGCTGAAGAACC
AGCTG
sequence update 2002. 9.10
Translated Amino Acid sequence
---SXGATGGNSGAAXGANSGAATGANSGAATGANSGAATGANSGNNAAVTGAANGNNGA
AAGANSGAATAANSGAATAANSGAATAANRGNNAAATGAANGNNGAAAGANSGAATAANS
GAANSGAATAANSGAAAGANSGAATAANSGAATAASGGNGASGAANPGSIVTPNDQNVSP
LSNSDAAATAASTTGRNPRNPTSRAPTVTPTPTSSAEEPA


Translated Amino Acid sequence (All Frames)
Frame A:
---ivxvllvvivvlxleqivvlqleqivalqleqivvlqlvqivetmpl*lvlqmeima
lqleqivvpqllqivvpqllqivvpqllqieetmplqlvlqmeimalqleqivvpqllqi
vvlqivvlqllqivvlqleqivvlqllqivalqllqvvemvqvvlqtlvq**lqmikmfl
hyrtlmlqqpqhqlqaetqeiqqvelqrshqrqplqlknql


Frame B:
---*xrcyww**wccxwsk*wccnwsk*wrcnwsk*wccnwck*wkqcrcnwcckwk*wr
cswsk*wcrncck*wcrncck*wcrncck*rkqcrcnwcckwk*wrcswsk*wcrncck*
wcck*wccncck*wccswsk*wccncck*wrcncckwwkwckwcckpwfnsnsk*skcfs
iiel*ccsnrsinyrqkpkksnk*ssnghtnanlfs*rts


Frame C:
---SXGATGGNSGAAXGANSGAATGANSGAATGANSGAATGANSGNNAAVTGAANGNNGA
AAGANSGAATAANSGAATAANSGAATAANRGNNAAATGAANGNNGAAAGANSGAATAANS
GAANSGAATAANSGAAAGANSGAATAANSGAATAASGGNGASGAANPGSIVTPNDQNVSP
LSNSDAAATAASTTGRNPRNPTSRAPTVTPTPTSSAEEPA


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHB246 (SHB246Q) /CSM/SH/SHB2-B/SHB246Q.Seq.d/ 1287 0.0
SHA440 (SHA440Q) /CSM/SH/SHA4-B/SHA440Q.Seq.d/ 1287 0.0
CHI407 (CHI407Q) /CSM/CH/CHI4-A/CHI407Q.Seq.d/ 1287 0.0
SHG517 (SHG517Q) /CSM/SH/SHG5-A/SHG517Q.Seq.d/ 1271 0.0
SHF136 (SHF136Q) /CSM/SH/SHF1-B/SHF136Q.Seq.d/ 1261 0.0
SHB145 (SHB145Q) /CSM/SH/SHB1-B/SHB145Q.Seq.d/ 1259 0.0
SHL133 (SHL133Q) /CSM/SH/SHL1-B/SHL133Q.Seq.d/ 1255 0.0
SHC416 (SHC416Q) /CSM/SH/SHC4-A/SHC416Q.Seq.d/ 1253 0.0
SHG352 (SHG352Q) /CSM/SH/SHG3-C/SHG352Q.Seq.d/ 1249 0.0
SHK112 (SHK112Q) /CSM/SH/SHK1-A/SHK112Q.Seq.d/ 1245 0.0

own update 2002.10.14
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CK783714|CK783714.1 UI-D-GC1-aau-c-07-0-UI.s1 UI-D-GC1 Alexandrium tamarense cDNA cloneUI-D-GC1-aau-c-07-0-UI 3', mRNA sequence. 30 0.003 3
DT338982|DT338982.1 JBW092C02.b_012.abi Pineapple week 5-10 nematode-infected gall cDNA library Ananas comosus cDNA clone JBW092C02 similar to undiscovered sequence, mRNA sequence. 30 0.004 3
AC141063|AC141063.1 Homo sapiens chromosome 16 clone RP11-1256C5, WORKING DRAFT SEQUENCE, 11 unordered pieces. 30 0.008 3
AC141261|AC141261.1 Homo sapiens chromosome 16 clone RP11-1335J10, WORKING DRAFT SEQUENCE, 4 unordered pieces. 28 0.028 3
AC167065|AC167065.1 Xenopus tropicalis clone ISB1-217D23, WORKING DRAFT SEQUENCE, 2 unordered pieces. 28 0.032 3
AY887028|AY887028.1 Ophiostoma novo-ulmi subsp. novo-ulmi isolate R66 MAT-1-2 gene, complete cds. 34 0.17 2
AY887027|AY887027.1 Ophiostoma novo-ulmi subsp. novo-ulmi isolate YU1 MAT-1-2 gene, complete cds. 34 0.17 2
AY887029|AY887029.1 Ophiostoma novo-ulmi subsp. novo-ulmi isolate V19 MAT-1-2 gene, complete cds. 34 0.17 2
DQ013872|DQ013872.1 Ophiostoma novo-ulmi isolate V1 mating type 3' flanking region genomic sequence. 34 0.17 2
CJ765123|CJ765123.1 Ipomoea nil cDNA clone:jmsf35i02, 3' end. 48 0.23 1
dna update 2005.12.21
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54GV8) RecName: Full=Uncharacterized transmembrane protein DDB... 53 9e-06
U87912_1(U87912|pid:none) Dictyostelium discoideum MAP kinase ki... 37 0.66
CP000471_2084(CP000471|pid:none) Magnetococcus sp. MC-1, complet... 35 2.5
S68824(S68824)rngB protein, cytosolic - slime mold (Dictyosteliu... 34 4.3
(Q7M3S9) RecName: Full=RING finger protein B; Short=Pro... 34 4.3
AC116979_82(AC116979|pid:none) Dictyostelium discoideum chromoso... 33 5.6
AY428796_1(AY428796|pid:none) Dictyostelium discoideum DIF insen... 33 7.3
(Q6CPW4) RecName: Full=Transcription activator MSS11; &CR382125... 33 7.3
AC116956_6(AC116956|pid:none) Dictyostelium discoideum chromosom... 33 7.3
AE017342_35(AE017342|pid:none) Cryptococcus neoformans var. neof... 33 9.6
protein update 2009. 5.28
PSORT

psg: 0.75 gvh: 0.44 alm: 0.54 top: 0.53 tms: 0.00 mit: -0.04 mip: 0.15
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
36.0 %: nuclear
8.0 %: Golgi
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for SHB246 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SHB246Z
3' end seq.
>SHB246Z.Seq
NNNNNNNNNNAATAGTGNAGGTGCTACTGGTGGTAATAGTGGTGCTGCANCTGGAGCAAA
TAGTGGTGCTGCAACTGGAGCAAATAGTGGCGCTGCAACTGGAGCAAATAGTGGTGCTGC
AACTGGTGCAAATAGTGGAAACAATGCCGCTGTAACTGGTGCTGCAAATGGAAATAATGG
CGCTGCAGCTGGAGCAAATAGTGGTGCCGCAACTGCTGCAAATAGTGGTGCCGCAACTGC
TGCAAATAGTGGTGCCGCAACTGCTGCAAATAGAGGAAACAATGCCGCTGCAACTGGTGC
TGCAAATGGAAATAATGGCGCTGCAGCTGGAGCAAATAGTGGTGCCGCAACTGCTGCAAA
TAGTGGTGCTGCAAATAGTGGTGCTGCAACTGCTGCAAATAGTGGTGCTGCAGCTGGAGC
AAATAGTGGTGCTGCAACTGCTGCAAATAGTGGCGCTGCAACTGCTGCAAGTGGTGGAAA
TGGTGCAAGTGGTGCTGCAAACCCTGGTTCAATAGTAACTCCAAATGATCAAAATGTTTC
TCCATTATCGAACTCTGATGCTGCAGCAACCGCAGCATCAACTACAGGCAGAAACCCAAG
AAATCCAACAAGTAGAGCTCCAACGGTCACACCAACGCCAACCTCTTCAGCTGAAGAACC
AGCTG
Length of 3' end seq. 665
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -