>SHB242 (SHB242Q) /CSM/SH/SHB2-B/SHB242Q.Seq.d/
XXXXXXXXXXTNAAAAAGGGACTTGNGAGTTTGTTGATTTNGATCCNAAACCNTTNNTTT
GNAAAANTGNTGCTGTTGTTTCAGTTGGNGTTGCTGTTGGNGNTGCTGTTGGTGGGGCNA
NTGCNCTTGGGGTNTTTATTTTTGNTGGTAAAAAAGGTT

---XKGTXEFVDXDPKPXXXKXXAVVSVGVAVGXAVGGAXALGVFIFXGKKG

Frame A:
---XKGTXEFVDXDPKPXXXKXXAVVSVGVAVGXAVGGAXALGVFIFXGKKG


Frame B:
---kkglxsllixixnxxfxkxxllfqlxlllxxllvgxxxlgxlflxvkkv


Frame C:
---krdlxvc*fxsxtxxlxxxcccfswxccwxccwwgxcxwgxyfxw*kr

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHB242 (SHB242Q) /CSM/SH/SHB2-B/SHB242Q.Seq.d/                        190   4e-48
CHF141 (CHF141Q) /CSM/CH/CHF1-B/CHF141Q.Seq.d/                        184   3e-46
CHP314 (CHP314Q) /CSM/CH/CHP3-A/CHP314Q.Seq.d/                        172   1e-42
AHP377 (AHP377Q) /CSM/AH/AHP3-D/AHP377Q.Seq.d/                        172   1e-42
AHG475 (AHG475Q) /CSM/AH/AHG4-D/AHG475Q.Seq.d/                        172   1e-42
CHQ518 (CHQ518Q) /CSM/CH/CHQ5-A/CHQ518Q.Seq.d/                        167   6e-41
CHO316 (CHO316Q) /CSM/CH/CHO3-A/CHO316Q.Seq.d/                        167   6e-41
AHD514 (AHD514Q) /CSM/AH/AHD5-A/AHD514Q.Seq.d/                        167   6e-41
CHP510 (CHP510Q) /CSM/CH/CHP5-A/CHP510Q.Seq.d/                        161   4e-39
CHG173 (CHG173Q) /CSM/CH/CHG1-D/CHG173Q.Seq.d/                        161   4e-39

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC112373|AC112373.4 Rattus norvegicus clone CH230-242I7, *** SEQUENCING IN PROGRESS ***, 119 unordered pieces.    44   0.78   1
AY221114|AY221114.1 Acetivibrio cellulolyticus cellulosomal bifunctional enzyme-binding/scaffoldin-anchoring protein D (scaD) gene, complete cds.    44   0.78   1
BX842624|BX842624.1 Neurospora crassa DNA linkage group I BAC clone B10D6.    44   0.78   1
DQ121048|DQ121048.1 Hucho taimen clone ZA-43 microsatellite sequence.    44   0.78   1
CA517896|CA517896.1 KS10002E05 KS10 Capsicum annuum cDNA, mRNA sequence.    42   3.1    1
BG725615|BG725615.1 sae44b05.y1 Gm-c1051 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1051-7762 5' similar to TR:Q9XEU0 Q9XEU0 ZINC-FINGER PROTEIN 1. ;, mRNA sequence.    42   3.1    1
BF324612|BF324612.1 su13b03.y1 Gm-c1066 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1066-1230 5' similar to TR:Q9XEU0 Q9XEU0 ZINC-FINGER PROTEIN 1. ;, mRNA sequence.    42   3.1    1
BE658881|BE658881.1 GM700007B20B10 Gm-r1070 Glycine max cDNA clone Gm-r1070-2396 3', mRNA sequence.    42   3.1    1
CX711037|CX711037.1 gmrtDrNS01_27-D_M13R_D03_025.s4 Water stressed 48h segment 2 gmrtDrNS01 Glycine max cDNA 3', mRNA sequence.    42   3.1    1
CX704658|CX704658.1 gmrtDrNS01_33-B_M13R_F03_021.s4 Water stressed 48h segment 2 gmrtDrNS01 Glycine max cDNA 3', mRNA sequence.    42   3.1    1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 81,001,104

 psg: 0.75  gvh: 0.57  alm: 0.30  top: 0.73  tms: 0.07  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 20.0 %: nuclear
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for SHB242 is cyt

>SHB242Z.Seq
NNNNNNNNNNTNAAAAAGGGACTTGNGAGTTTGTTGATTTNGATCCNAAACCNTTNNTTT
GNAAAANTGNTGCTGTTGTTTCAGTTGGNGTTGCTGTTGGNGNTGCTGTTGGTGGGGCNA
NTGCNCTTGGGGTNTTTATTTTTGNTGGTAAAAAAGGTT