>SHB241 (SHB241Q) /CSM/SH/SHB2-B/SHB241Q.Seq.d/
XXXXXXXXXXCATTCATAAATTCATTTGCAAACTATGCACTTTATGATAGTTTAGATGAA
GCAATTAAACATAAACTCAAAATTTTAATACCAGTTAAATTCTCTATGGTGGTGGACGAA
GGTGAAAAGTTAATTTCAATTGGTTGTGAAACAAAAAATGAATATTTGAGAATTGGTCAA
TCATCAACACAAACATGCCAAACATATGAATTTCCAGAATTGGGTATAACAATCATTGAT
ACACCAGGAATTGGAGATAGTAGAGGTATCCATCAAGATAGTGTAAATTTACAACATATT
CTTAAATATATTTCAAGCTTTGATAAAATCGATGGTATTTGTATTTTATTAAAACCAAAT
GAATCAAAATCTACAGTTCTATATCAGTATTGCTTCAAAGGAATATTATCACAACTTGAC
AAATCCGCTGCCAATAACATTGCCTTCTGTTATACCAATTCACGTGGTACATTCTATAAA
CCAGGCGATAGTCATTTAAAGATTCAACAAATGGTTAAATCATTAAATGTACCAAATCTA
AAATATAACGGAACCAATACATTTTGCTTTGACAGTGAATCATTTAGACTCCTTGCTGCC
CTTCAAAGCAATGTTAAATTCTCTCAAAATCAGATCAATGATTATTCATCAAGTTGGAAA
GTATCAGTTGAATCAACTGAAAAACTAATATCATATTTAAATTTA

---FINSFANYALYDSLDEAIKHKLKILIPVKFSMVVDEGEKLISIGCETKNEYLRIGQS
STQTCQTYEFPELGITIIDTPGIGDSRGIHQDSVNLQHILKYISSFDKIDGICILLKPNE
SKSTVLYQYCFKGILSQLDKSAANNIAFCYTNSRGTFYKPGDSHLKIQQMVKSLNVPNLK
YNGTNTFCFDSESFRLLAALQSNVKFSQNQINDYSSSWKVSVESTEKLISYLNL

Frame A:
---ihkficklctl**fr*sn*t*tqnfnts*ilygggrr*kvnfnwl*nkk*ifenwsi
intnmpni*isrigynnh*ytrnwr**rypsr*ckfttys*iyfkl**nrwylyfiktk*
ikiyssisvllqrniitt*qircq*hclllyqftwyil*trr*sfkdstng*iikctksk
i*rnqyill*q*ii*tpccpskqc*ilsksdq*lfiklesis*in*ktniifkf


Frame B:
---FINSFANYALYDSLDEAIKHKLKILIPVKFSMVVDEGEKLISIGCETKNEYLRIGQS
STQTCQTYEFPELGITIIDTPGIGDSRGIHQDSVNLQHILKYISSFDKIDGICILLKPNE
SKSTVLYQYCFKGILSQLDKSAANNIAFCYTNSRGTFYKPGDSHLKIQQMVKSLNVPNLK
YNGTNTFCFDSESFRLLAALQSNVKFSQNQINDYSSSWKVSVESTEKLISYLNL


Frame C:
---s*ihlqtmhfmiv*mkqlninskf*yqlnslwwwtkvks*fqlvvkqkmni*elvnh
qhkhakhmnfqnwv*qslihqeleivevsikiv*iyniflnifqaliksmvfvfy*nqmn
qnlqfyisiaskeyyhnltnplpitlpsvipihvvhsinqaivi*rfnkwlnh*myqi*n
itepihfaltvnhldsllpfkamlnslkirsmiihqvgkyqlnqlkn*yhi*i

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHB241 (SHB241Q) /CSM/SH/SHB2-B/SHB241Q.Seq.d/                       1378   0.0
AHO452 (AHO452Q) /CSM/AH/AHO4-C/AHO452Q.Seq.d/                       1366   0.0
AHN486 (AHN486Q) /CSM/AH/AHN4-D/AHN486Q.Seq.d/                       1364   0.0
AHM225 (AHM225Q) /CSM/AH/AHM2-B/AHM225Q.Seq.d/                       1362   0.0
AHO221 (AHO221Q) /CSM/AH/AHO2-A/AHO221Q.Seq.d/                       1360   0.0
AHL690 (AHL690Q) /CSM/AH/AHL6-D/AHL690Q.Seq.d/                       1356   0.0
AHH127 (AHH127Q) /CSM/AH/AHH1-B/AHH127Q.Seq.d/                       1348   0.0
AHB619 (AHB619Q) /CSM/AH/AHB6-A/AHB619Q.Seq.d/                       1342   0.0
AHB636 (AHB636Q) /CSM/AH/AHB6-B/AHB636Q.Seq.d/                       1328   0.0
AHK137 (AHK137Q) /CSM/AH/AHK1-B/AHK137Q.Seq.d/                       1314   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34   0.035  11
CC301381|CC301381.1 CH261-98D12_Sp6.2 CH261 Gallus gallus genomic clone CH261-98D12, DNA sequence.    50   0.063  1
AC171531|AC171531.2 Medicago truncatula chromosome 2 clone mte1-1h3, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.    34   0.24   4
AC150647|AC150647.13 Medicago truncatula clone mth2-65p21, complete sequence.    48   0.25   1
AC174378|AC174378.1 Medicago truncatula clone mth2-57m5, WORKING DRAFT SEQUENCE, 2 unordered pieces.    48   0.25   1
AC150647|AC150647.13 Medicago truncatula clone mth2-65p21, complete sequence.    48   0.25   1
AC150505|AC150505.12 Medicago truncatula clone mth2-99l2, complete sequence.    48   0.25   1
CR388405|CR388405.10 Zebrafish DNA sequence from clone DKEY-11O1 in linkage group 16.    46   0.37   2
BS000552|BS000552.1 Pan troglodytes chromosome Y clone:PTB-302F24, complete sequences.    36   0.43   4
AC099780|AC099780.2 Homo sapiens chromosome 3 clone RP11-769M23, complete sequence.    34   0.54   7

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB120174_1(AB120174|pid:none) Dictyostelium discoideum DD8-14 mR...   107   3e-22
AC114263_3(AC114263|pid:none) Dictyostelium discoideum chromosom...   104   2e-21
BC160745_1(BC160745|pid:none) Xenopus laevis hypothetical protei...    40   0.052
CP001357_1831(CP001357|pid:none) Brachyspira hyodysenteriae WA1,...    39   0.12
BC163769_1(BC163769|pid:none) Danio rerio zgc:195077, mRNA (cDNA...    39   0.15
BC155597_1(BC155597|pid:none) Danio rerio zgc:172075, mRNA (cDNA...    37   0.44
BC155593_1(BC155593|pid:none) Danio rerio zgc:172065, mRNA (cDNA...    37   0.57
BC152666_1(BC152666|pid:none) Danio rerio hypothetical LOC554469...    36   0.97
BC151930_1(BC151930|pid:none) Danio rerio zgc:171695, mRNA (cDNA...    35   1.7
CR548612_5(CR548612|pid:none) Paramecium tetraurelia macronuclea...    35   2.2

 psg: 0.80  gvh: 0.25  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: plasma membrane
	  4.0 %: vacuolar

>> prediction for SHB241 is nuc

>SHB241Z.Seq
NNNNNNNNNNCATTCATAAATTCATTTGCAAACTATGCACTTTATGATAGTTTAGATGAA
GCAATTAAACATAAACTCAAAATTTTAATACCAGTTAAATTCTCTATGGTGGTGGACGAA
GGTGAAAAGTTAATTTCAATTGGTTGTGAAACAAAAAATGAATATTTGAGAATTGGTCAA
TCATCAACACAAACATGCCAAACATATGAATTTCCAGAATTGGGTATAACAATCATTGAT
ACACCAGGAATTGGAGATAGTAGAGGTATCCATCAAGATAGTGTAAATTTACAACATATT
CTTAAATATATTTCAAGCTTTGATAAAATCGATGGTATTTGTATTTTATTAAAACCAAAT
GAATCAAAATCTACAGTTCTATATCAGTATTGCTTCAAAGGAATATTATCACAACTTGAC
AAATCCGCTGCCAATAACATTGCCTTCTGTTATACCAATTCACGTGGTACATTCTATAAA
CCAGGCGATAGTCATTTAAAGATTCAACAAATGGTTAAATCATTAAATGTACCAAATCTA
AAATATAACGGAACCAATACATTTTGCTTTGACAGTGAATCATTTAGACTCCTTGCTGCC
CTTCAAAGCAATGTTAAATTCTCTCAAAATCAGATCAATGATTATTCATCAAGTTGGAAA
GTATCAGTTGAATCAACTGAAAAACTAATATCATATTTAAATTTA