SHB223
Library SH
(Link to library)
Clone ID SHB223
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16411-1
Original site URL
Representative seq. ID SHB223P
(Link to Original site)
Representative DNA sequence
>SHB223 (SHB223Q) /CSM/SH/SHB2-A/SHB223Q.Seq.d/
CTGTTGGCCTACTGGNATTAATAAATAATAATTAAAATTTGCATATATAAAAGNAAATAA
AAATTTTTTATTTTTTGTAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCAAC
ATACATATATATATATATATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGA
AGAATTTACTGATAAAACAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAA
ATCAAATGTACAATTAGCACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATAA
TTTAGCAAAATCTATATTTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTT
TAAAAGATTATTAGCCAAACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAA
TTCATTATTTTTACAAGTTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTC
TCATTTAGCAGTTGACCATTTAATATTGGGATTATTGGATGATAGAGATATATTATCAGT
ATTGGGAGATGCTGGTGCAACCAAAGAACAAGTTATACAAGCAGTTAAAGAGATTAGAGG
AAATAAAAAGATTACAAGTAAAACTGCAGAATCTACCTATGAAGCATTATCAAAATATXX
XXXXXXXXTGTTTGATGATGAATCTCATATGGTTAGAATTGATATGAGTGAATATATGGA
ACAACATTCGGTTTCTCGTTTAATTGGTGCTCCACCAGGTTATGTAGGTTATGATCAAGG
TGGTCAATTAACTGAAGCCGTCAGAAGAAGACCATACAGTGTAGTATTGTTTGATGAAGT
TGAAAAAGCTCATCAACAAGTTTGGAATGTTCTCTTACAAGTATTGGATGAAGGTCGTCT
TACCGATGGTCAAGGTAGAACCGTAGATTTCTCAAATGTTGTTATCATTATGACCTCAAG
TTTAGGTAGTCAATACATCCTTGGTGAACAAGCAAACAAAGAAGGTGGTAACAACTCTTT
ATCACAAGCTTGTAAAGATAAAGTCATTGATGAAGTTAGAAAACATTTCCGTCCAGAGTT
TTTAAATCGTCTCGATGATATAATTGTCTTTACTCCATTGAGTAAAGAAAACCTTCATAG
TATTATTACTCTTCAATTAAGATCCGTCGAAAAGAGATTAGAAGATCAAAATATGTCTTT
AAAGATTTCAAACGATGCTTTAGATTCAATTATCAATGCTGCATATGATCCAATCTTTGG
TGGTAGACCATTGAAACGTTACATTGAAAAGAATATTGTCACTGAACTTAGTAAACTCAT
CCTTGGTGGTAAATTAAAAGAAAATCAAGGTGTTGTTGTCAATAAAAAGATCATCATCTC
AACTTNATATTATAGATTTAAAACAACAACAACAACGTCCAGCTTCTCCAACCAAAAAAC
AAAAAACT
sequence update 2002.10.25
Translated Amino Acid sequence
cwptgink**lkfayikxnknflffvnilfsvnksynfstyiyiyiflk*NKIKMSFNPE
EFTDKTNTILLRTQELAREKSNVQLAPIHLAVTLLNDEDNLAKSIFEKAGGDVPKIDAGF
KRLLAKQPVQNPVPPEISPNSLFLQVLRSAARHQKNNGDSHLAVDHLILGLLDDRDILSV
LGDAGATKEQVIQAVKEIRGNKKITSKTAESTYEALSKY---

---FDDESHMVRIDMSEYMEQHSVSRLIGAPPGYVGYDQGGQLTEAVRRRPYSVVLFDEV
EKAHQQVWNVLLQVLDEGRLTDGQGRTVDFSNVVIIMTSSLGSQYILGEQANKEGGNNSL
SQACKDKVIDEVRKHFRPEFLNRLDDIIVFTPLSKENLHSIITLQLRSVEKRLEDQNMSL
KISNDALDSIINAAYDPIFGGRPLKRYIEKNIVTELSKLILGGKLKENQGVVVNKKIIIS
TXYYRFKTTTTTSSFSNQKTKN


Translated Amino Acid sequence (All Frames)
Frame A:
llaywx**iiikiciykxk*kffifckhiifck*ii*ffnihiyiyifkik*nknvi*sr
riy**nkynfvknsrigkrkikctistntfgcyiik**r*fskiyi*kswwrctkn*cwf
*kiisqttcsksstt*nfskfiiftsfkisstsske*w*fsfss*pfnigiig**ryiis
igrcwcnqrtsytss*rd*rk*kdyk*ncriyl*siiki---

---clmmnliwleli*vniwnnirflv*lvlhqvm*vmikvvn*lkpseedhtv*yclmk
lkklinkfgmfsykywmkvvlpmvkvep*isqmllsl*pqv*vvntslvnkqtkkvvttl
yhklvkikslmklenisvqsf*ivsmi*lsllh*vkktfivlllfn*dpskrd*kikicl
*rfqtml*iqlsmlhmiqslvvdh*nvtlkrilslnlvnsslvvn*kkikvllsikrsss
qlxiidlkqqqqrpasptkkqkt

Frame B:
cwptgink**lkfayikxnknflffvnilfsvnksynfstyiyiyiflk*NKIKMSFNPE
EFTDKTNTILLRTQELAREKSNVQLAPIHLAVTLLNDEDNLAKSIFEKAGGDVPKIDAGF
KRLLAKQPVQNPVPPEISPNSLFLQVLRSAARHQKNNGDSHLAVDHLILGLLDDRDILSV
LGDAGATKEQVIQAVKEIRGNKKITSKTAESTYEALSKY---

---v***isyg*n*ye*iygttfgfsfnwcstrlcrl*srwsin*srqkktiqcsiv**s
*kssstslecsltsig*rssyrwsr*nrrflkccyhydlkfr*sihpw*tskqrrw*qlf
itsl*r*sh**s*ktfpsrvfkssr*ynclysie*rkps*yyyssikirrkeirrskyvf
kdfkrcfrfnyqcci*snlww*tietlh*keych*t**thpww*ikrksrcccq*kdhhl
nxil*i*nnnnnvqllqpknkk

Frame C:
vgllxlinnn*nlhi*kxikifyfl*tyyfl*inhiifqhtyiyiyf*nkik*kchliqk
nllikqiqfc*elknwqeknqmyn*hqyiwllhy*mmkii*qnlylkklvemyqklmlvl
kdy*pnnlfkiqyhlkflqihyfykf*dqqhvikrimvili*qlti*ywdywmieiyyqy
wemlvqpknklykqlkrleeikrlqvklqnlpmkhyqn---

---FDDESHMVRIDMSEYMEQHSVSRLIGAPPGYVGYDQGGQLTEAVRRRPYSVVLFDEV
EKAHQQVWNVLLQVLDEGRLTDGQGRTVDFSNVVIIMTSSLGSQYILGEQANKEGGNNSL
SQACKDKVIDEVRKHFRPEFLNRLDDIIVFTPLSKENLHSIITLQLRSVEKRLEDQNMSL
KISNDALDSIINAAYDPIFGGRPLKRYIEKNIVTELSKLILGGKLKENQGVVVNKKIIIS
TXYYRFKTTTTTSSFSNQKTKN

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHB223 (SHB223Q) /CSM/SH/SHB2-A/SHB223Q.Seq.d/ 2450 0.0
SHB463 (SHB463Q) /CSM/SH/SHB4-C/SHB463Q.Seq.d/ 1495 0.0
SHA261 (SHA261Q) /CSM/SH/SHA2-C/SHA261Q.Seq.d/ 1495 0.0
SHG160 (SHG160Q) /CSM/SH/SHG1-C/SHG160Q.Seq.d/ 1489 0.0
SHB445 (SHB445Q) /CSM/SH/SHB4-B/SHB445Q.Seq.d/ 1489 0.0
CHL309 (CHL309Q) /CSM/CH/CHL3-A/CHL309Q.Seq.d/ 1489 0.0
SHA689 (SHA689Q) /CSM/SH/SHA6-D/SHA689Q.Seq.d/ 1483 0.0
SHG564 (SHG564Q) /CSM/SH/SHG5-C/SHG564Q.Seq.d/ 1481 0.0
SHC889 (SHC889Q) /CSM/SH/SHC8-D/SHC889Q.Seq.d/ 1481 0.0
CHR708 (CHR708Q) /CSM/CH/CHR7-A/CHR708Q.Seq.d/ 1481 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CP000029|CP000029.1 Staphylococcus epidermidis RP62A, complete genome. 129 4e-34 3
AE016746|AE016746.1 Staphylococcus epidermidis ATCC 12228, section 3 of 9 of the complete genome. 129 4e-34 3
AX145048|AX145048.1 Sequence 3770 from Patent WO0134809. 129 5e-34 3
AR485684|AR485684.1 Sequence 3770 from patent US 6703492. 129 5e-34 3
AF269730|AF269730.1 Staphylococcus epidermidis strain SR1 clone step.1020d12 genomic sequence. 129 5e-34 3
AX143829|AX143829.1 Sequence 2551 from Patent WO0134809. 129 5e-34 3
AR484857|AR484857.1 Sequence 2551 from patent US 6703492. 129 5e-34 3
AB239684|AB239684.1 Tetragenococcus halophilus gene for ClpB, complete cds. 105 2e-24 2
BX842644|BX842644.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 3/4. 68 2e-19 3
AP008934|AP008934.1 Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 DNA, complete genome. 109 2e-19 1
dna update 2005.12.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY764155_1(AY764155|pid:none) Vitis vinifera heat shock protein ... 287 7e-76
AJ970534_1(AJ970534|pid:none) Triticum turgidum subsp. durum par... 285 4e-75
AF097363_1(AF097363|pid:none) Triticum aestivum heat shock prote... 283 8e-75
AJ970535_1(AJ970535|pid:none) Triticum turgidum subsp. durum par... 283 1e-74
L35272_1(L35272|pid:none) Glycine max heat shock protein (SB100)... 283 1e-74
AJ970533_1(AJ970533|pid:none) Triticum turgidum subsp. durum par... 282 2e-74
AF083327_1(AF083327|pid:none) Zea mays 101 kDa heat shock protei... 282 2e-74
BT066296_1(BT066296|pid:none) Zea mays full-length cDNA clone ZM... 282 2e-74
AF174433_1(AF174433|pid:none) Triticum aestivum heat shock prote... 282 2e-74
(Q6F2Y7) RecName: Full=Heat shock protein 101; &AC130611_3(AC13... 282 2e-74
protein update 2009. 4.15
PSORT

psg: 0.63 gvh: 0.36 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.03 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
44.0 %: nuclear
8.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for SHB223 is cyt

5' end seq. ID SHB223F
5' end seq.
>SHB223F.Seq
CTGTTGGCCTACTGGNATTAATAAATAATAATTAAAATTTGCATATATAAAAGNAAATAA
AAATTTTTTATTTTTTGTAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCAAC
ATACATATATATATATATATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGA
AGAATTTACTGATAAAACAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAA
ATCAAATGTACAATTAGCACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATAA
TTTAGCAAAATCTATATTTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTT
TAAAAGATTATTAGCCAAACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAA
TTCATTATTTTTACAAGTTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTC
TCATTTAGCAGTTGACCATTTAATATTGGGATTATTGGATGATAGAGATATATTATCAGT
ATTGGGAGATGCTGGTGCAACCAAAGAACAAGTTATACAAGCAGTTAAAGAGATTAGAGG
AAATAAAAAGATTACAAGTAAAACTGCAGAATCTACCTATGAAGCATTATCAAAATATNN
NNNNNNNN
Length of 5' end seq. 668
3' end seq. ID SHB223Z
3' end seq.
>SHB223Z.Seq
NNNNNNNNNNTGTTTGATGATGAATCTCATATGGTTAGAATTGATATGAGTGAATATATG
GAACAACATTCGGTTTCTCGTTTAATTGGTGCTCCACCAGGTTATGTAGGTTATGATCAA
GGTGGTCAATTAACTGAAGCCGTCAGAAGAAGACCATACAGTGTAGTATTGTTTGATGAA
GTTGAAAAAGCTCATCAACAAGTTTGGAATGTTCTCTTACAAGTATTGGATGAAGGTCGT
CTTACCGATGGTCAAGGTAGAACCGTAGATTTCTCAAATGTTGTTATCATTATGACCTCA
AGTTTAGGTAGTCAATACATCCTTGGTGAACAAGCAAACAAAGAAGGTGGTAACAACTCT
TTATCACAAGCTTGTAAAGATAAAGTCATTGATGAAGTTAGAAAACATTTCCGTCCAGAG
TTTTTAAATCGTCTCGATGATATAATTGTCTTTACTCCATTGAGTAAAGAAAACCTTCAT
AGTATTATTACTCTTCAATTAAGATCCGTCGAAAAGAGATTAGAAGATCAAAATATGTCT
TTAAAGATTTCAAACGATGCTTTAGATTCAATTATCAATGCTGCATATGATCCAATCTTT
GGTGGTAGACCATTGAAACGTTACATTGAAAAGAATATTGTCACTGAACTTAGTAAACTC
ATCCTTGGTGGTAAATTAAAAGAAAATCAAGGTGTTGTTGTCAATAAAAAGATCATCATC
TCAACTTNATATTATAGATTTAAAACAACAACAACAACGTCCAGCTTCTCCAACCAAAAA
ACAAAAAACT
Length of 3' end seq. 790
Connected seq. ID SHB223P
Connected seq.
>SHB223P.Seq
CTGTTGGCCTACTGGNATTAATAAATAATAATTAAAATTTGCATATATAAAAGNAAATAA
AAATTTTTTATTTTTTGTAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCAAC
ATACATATATATATATATATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGA
AGAATTTACTGATAAAACAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAA
ATCAAATGTACAATTAGCACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATAA
TTTAGCAAAATCTATATTTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTT
TAAAAGATTATTAGCCAAACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAA
TTCATTATTTTTACAAGTTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTC
TCATTTAGCAGTTGACCATTTAATATTGGGATTATTGGATGATAGAGATATATTATCAGT
ATTGGGAGATGCTGGTGCAACCAAAGAACAAGTTATACAAGCAGTTAAAGAGATTAGAGG
AAATAAAAAGATTACAAGTAAAACTGCAGAATCTACCTATGAAGCATTATCAAAATAT--
--------TGTTTGATGATGAATCTCATATGGTTAGAATTGATATGAGTGAATATATGGA
ACAACATTCGGTTTCTCGTTTAATTGGTGCTCCACCAGGTTATGTAGGTTATGATCAAGG
TGGTCAATTAACTGAAGCCGTCAGAAGAAGACCATACAGTGTAGTATTGTTTGATGAAGT
TGAAAAAGCTCATCAACAAGTTTGGAATGTTCTCTTACAAGTATTGGATGAAGGTCGTCT
TACCGATGGTCAAGGTAGAACCGTAGATTTCTCAAATGTTGTTATCATTATGACCTCAAG
TTTAGGTAGTCAATACATCCTTGGTGAACAAGCAAACAAAGAAGGTGGTAACAACTCTTT
ATCACAAGCTTGTAAAGATAAAGTCATTGATGAAGTTAGAAAACATTTCCGTCCAGAGTT
TTTAAATCGTCTCGATGATATAATTGTCTTTACTCCATTGAGTAAAGAAAACCTTCATAG
TATTATTACTCTTCAATTAAGATCCGTCGAAAAGAGATTAGAAGATCAAAATATGTCTTT
AAAGATTTCAAACGATGCTTTAGATTCAATTATCAATGCTGCATATGATCCAATCTTTGG
TGGTAGACCATTGAAACGTTACATTGAAAAGAATATTGTCACTGAACTTAGTAAACTCAT
CCTTGGTGGTAAATTAAAAGAAAATCAAGGTGTTGTTGTCAATAAAAAGATCATCATCTC
AACTTNATATTATAGATTTAAAACAACAACAACAACGTCCAGCTTCTCCAACCAAAAAAC
AAAAAACT
Length of connected seq. 1438
Full length Seq ID -
Full length Seq. -
Length of full length seq. -