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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHB204
Library SH
(Link to library)
Clone ID SHB204
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16411-1
Original site URL
Representative seq. ID SHB204P
(Link to Original site)
Representative DNA sequence 
>SHB204 (SHB204Q) /CSM/SH/SHB2-A/SHB204Q.Seq.d/
TGTTGGCCTACTGGTTTTTTATTTTTTGTAAACATATTATTTTCTGTAAATAAATCATAT
AATTTTTCAACATACATATATATATATATATTTTTAAAATAAAATAAAATAAAAATGTCA
TTTAATCCAGAAGAATTTACTGATAAAACAAATACAATTTTGTTAAGAACTCAAGAATTG
GCAAGAGAAAAATCAAATGTACAATTAGCACCAATACATTTGGCTGTTACATTATTAAAT
GATGAAGATAATTTAGCAAAATCTATATTTGAAAAAGCTGGTGGAGATGTACCAAAAATT
GATGCTGGTTTTAAAAGATTATTGGCCAAACAACCTGTTCAAAATCCAGTACCACCTGAA
ATTTCTCCAAATTCATTATTTTTACAAGTTTTAAGATCAGCAGCACGTCATCAAAAGAAT
AATGGTGATTCTCATTTAGCAGTTGACCATTTAATATTGGGATTATTGGATGATAGAGAT
ATATTATCAGTATTGGGAGATGCTGGTGCAACCAAAGAACAAGTTATACAAGCAGTTAAA
GAGATTAGAGGAAATAAAAAGATTACAAGTAAAACTGCAGAATCTACCTATGAAGCATTA
TCAAAATATGGTTXXXXXXXXXXTCGTTTAATTGGTGCTCCACCAGGTTATGTAGGTTAT
GATCAAGGTGGTTAATTAACTGAAGCCGTCAGAAGAAGACCATGCAGTGTAGTATTGTTT
GATGAAGTTGAAAAAGCTCATCAACAAGTTTGGAATGTTCTCTTACAAGTATTGGATGAA
GGTCGTCTTACCGATGGTCAAGGTAGAACCGTAGATTTCTCAAATGTTGTTATCATTATG
ACCTCAAATTTAGGTAGTCAATACATCCTTGGTGAACAAGCAAACAAAGAAGGTGGTAAC
AACTCTTTATCACAAGCTTGTAAAGATAAAGTCATTGATGAAGTTAGAAAACATTTCCGT
CCAGAGTTTTTAAATCGTCTCGATGATATAATTGTCTTTACTCCATTGAGTAAAGAAAAC
CTTCATAGTATTATTACTCTTCAATTAAGATCCGTCGAAAAGAGATTAGAAGATCAAAAT
ATGTCTTTAAAGATTTCAAACGATGCTTTAGATTCAATTATCAATGCTGCATATGATCCA
ATCTTTGGTGGTAGACCATTGAAACGTTACATTGAAAAGAATATTGTCACTGAACTTAGT
AAACTCATCCTTGGTGGTAAATTAAAAGAAAATCAAGGTGTTGTTGTCAATGAAAAAGAT
CATCATCTCAACTTTGATATTATAGATTTAAAACAACAACAACAACGTCCAGCTTCTCCA
ACCAAAAAACAAAAAACTATTAAATAAAAAAAAATAAAAAATAAATAAAATCTATC
sequence update 2002.10.25
Translated Amino Acid sequence 
cwptgflffvnilfsvnksynfstyiyiyiflk*NKIKMSFNPEEFTDKTNTILLRTQEL
AREKSNVQLAPIHLAVTLLNDEDNLAKSIFEKAGGDVPKIDAGFKRLLAKQPVQNPVPPE
ISPNSLFLQVLRSAARHQKNNGDSHLAVDHLILGLLDDRDILSVLGDAGATKEQVIQAVK
EIRGNKKITSKTAESTYEALSKYG---

---RLIGAPPGYVGYDQGG*lteavrrrpcsvvlfdevekahqqvwnvllqvldegrltd
gqgrtvdfsnvviimtsnlgsqyilgeqankeggnnslsqackdkvidevrkhfrpefln
rlddiivftplskenlhsiitlqlrsvekrledqnmslkisndaldsiinaaydpifggr
plkryieknivtelsklilggklkenqgvvvnekdhhlnfdiidlkqqqqrpasptkkqk
tik*kkiknk*nl
Translated Amino Acid sequence (All Frames) 
Frame A:
cwptgflffvnilfsvnksynfstyiyiyiflk*NKIKMSFNPEEFTDKTNTILLRTQEL
AREKSNVQLAPIHLAVTLLNDEDNLAKSIFEKAGGDVPKIDAGFKRLLAKQPVQNPVPPE
ISPNSLFLQVLRSAARHQKNNGDSHLAVDHLILGLLDDRDILSVLGDAGATKEQVIQAVK
EIRGNKKITSKTAESTYEALSKYG---

---sfnwcstrlcrl*srwlin*srqkktmqcsiv**s*kssstslecsltsig*rssyr
wsr*nrrflkccyhydlkfr*sihpw*tskqrrw*qlfitsl*r*sh**s*ktfpsrvfk
ssr*ynclysie*rkps*yyyssikirrkeirrskyvfkdfkrcfrfnyqcci*snlww*
tietlh*keych*t**thpww*ikrksrcccq*krsssql*yyrfktttttssfsnqktk
ny*ikknkk*iksi

Frame B:
vgllvfyfl*tyyfl*inhiifqhtyiyiyf*nkik*kchliqknllikqiqfc*elknw
qeknqmyn*hqyiwllhy*mmkii*qnlylkklvemyqklmlvlkdywpnnlfkiqyhlk
flqihyfykf*dqqhvikrimvili*qlti*ywdywmieiyyqywemlvqpknklykqlk
rleeikrlqvklqnlpmkhyqnmv---

---RLIGAPPGYVGYDQGG*lteavrrrpcsvvlfdevekahqqvwnvllqvldegrltd
gqgrtvdfsnvviimtsnlgsqyilgeqankeggnnslsqackdkvidevrkhfrpefln
rlddiivftplskenlhsiitlqlrsvekrledqnmslkisndaldsiinaaydpifggr
plkryieknivtelsklilggklkenqgvvvnekdhhlnfdiidlkqqqqrpasptkkqk
tik*kkiknk*nl

Frame C:
laywffifckhiifck*ii*ffnihiyiyifkik*nknvi*srriy**nkynfvknsrig
krkikctistntfgcyiik**r*fskiyi*kswwrctkn*cwf*kiigqttcsksstt*n
fskfiiftsfkisstsske*w*fsfss*pfnigiig**ryiisigrcwcnqrtsytss*r
d*rk*kdyk*ncriyl*siikiw---

---v*lvlhqvm*vmikvvn*lkpseedhav*yclmklkklinkfgmfsykywmkvvlpm
vkvep*isqmllsl*pqi*vvntslvnkqtkkvvttlyhklvkikslmklenisvqsf*i
vsmi*lsllh*vkktfivlllfn*dpskrd*kikicl*rfqtml*iqlsmlhmiqslvvd
h*nvtlkrilslnlvnsslvvn*kkikvllsmkkiiistlil*i*nnnnnvqllqpknkk
llnkkk*kinkiy
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHB204 (SHB204Q) /CSM/SH/SHB2-A/SHB204Q.Seq.d/                       2335   0.0
VHK241 (VHK241Q) /CSM/VH/VHK2-B/VHK241Q.Seq.d/                       1372   0.0
VHI333 (VHI333Q) /CSM/VH/VHI3-B/VHI333Q.Seq.d/                       1372   0.0
SHL818 (SHL818Q) /CSM/SH/SHL8-A/SHL818Q.Seq.d/                       1372   0.0
SHL678 (SHL678Q) /CSM/SH/SHL6-D/SHL678Q.Seq.d/                       1372   0.0
SHL672 (SHL672Q) /CSM/SH/SHL6-C/SHL672Q.Seq.d/                       1372   0.0
SHL540 (SHL540Q) /CSM/SH/SHL5-B/SHL540Q.Seq.d/                       1372   0.0
SHL520 (SHL520Q) /CSM/SH/SHL5-A/SHL520Q.Seq.d/                       1372   0.0
SHK741 (SHK741Q) /CSM/SH/SHK7-B/SHK741Q.Seq.d/                       1372   0.0
SHK668 (SHK668Q) /CSM/SH/SHK6-C/SHK668Q.Seq.d/                       1372   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CP000029|CP000029.1 Staphylococcus epidermidis RP62A, complete genome.    76   2e-18  3
AE016746|AE016746.1 Staphylococcus epidermidis ATCC 12228, section 3 of 9 of the complete genome.    76   2e-18  3
AX145048|AX145048.1 Sequence 3770 from Patent WO0134809.           76   2e-18  3
AR485684|AR485684.1 Sequence 3770 from patent US 6703492.          76   2e-18  3
AF269730|AF269730.1 Staphylococcus epidermidis strain SR1 clone step.1020d12 genomic sequence.    76   2e-18  3
AX143829|AX143829.1 Sequence 2551 from Patent WO0134809.           76   3e-18  3
AR484857|AR484857.1 Sequence 2551 from patent US 6703492.          76   3e-18  3
AR632719|AR632719.1 Sequence 1 from patent US 6846651.             46   3e-13  3
AR274513|AR274513.1 Sequence 1 from patent US 6506581.             46   3e-13  3
BD426631|BD426631.1 The Nucleotide Sequence of the Haemophilus influenzae Rd Genome,Fragments Thereof, and Uses Thereof.    46   3e-13  3
dna update 2005.12.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY764155_1(AY764155|pid:none) Vitis vinifera heat shock protein ...   244   5e-63
AJ970534_1(AJ970534|pid:none) Triticum turgidum subsp. durum par...   243   9e-63
CP000806_1939(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...   243   1e-62
AJ970533_1(AJ970533|pid:none) Triticum turgidum subsp. durum par...   243   1e-62
(Q6F2Y7) RecName: Full=Heat shock protein 101;  &AC130611_3(AC13...   243   1e-62
AF097363_1(AF097363|pid:none) Triticum aestivum heat shock prote...   242   2e-62
AJ970535_1(AJ970535|pid:none) Triticum turgidum subsp. durum par...   241   3e-62
CP000806_3217(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...   241   3e-62
L35272_1(L35272|pid:none) Glycine max heat shock protein (SB100)...   241   4e-62
CP001358_568(CP001358|pid:none) Desulfovibrio desulfuricans subs...   241   4e-62
protein update 2009. 4.15
PSORT 

 psg: 0.63  gvh: 0.36  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SHB204 is cyt
5' end seq. ID SHB204F
5' end seq. 
>SHB204F.Seq
TGTTGGCCTACTGGTTTTTTATTTTTTGTAAACATATTATTTTCTGTAAATAAATCATAT
AATTTTTCAACATACATATATATATATATATTTTTAAAATAAAATAAAATAAAAATGTCA
TTTAATCCAGAAGAATTTACTGATAAAACAAATACAATTTTGTTAAGAACTCAAGAATTG
GCAAGAGAAAAATCAAATGTACAATTAGCACCAATACATTTGGCTGTTACATTATTAAAT
GATGAAGATAATTTAGCAAAATCTATATTTGAAAAAGCTGGTGGAGATGTACCAAAAATT
GATGCTGGTTTTAAAAGATTATTGGCCAAACAACCTGTTCAAAATCCAGTACCACCTGAA
ATTTCTCCAAATTCATTATTTTTACAAGTTTTAAGATCAGCAGCACGTCATCAAAAGAAT
AATGGTGATTCTCATTTAGCAGTTGACCATTTAATATTGGGATTATTGGATGATAGAGAT
ATATTATCAGTATTGGGAGATGCTGGTGCAACCAAAGAACAAGTTATACAAGCAGTTAAA
GAGATTAGAGGAAATAAAAAGATTACAAGTAAAACTGCAGAATCTACCTATGAAGCATTA
TCAAAATATGGTTNNNNNNNNNN
Length of 5' end seq. 623
3' end seq. ID SHB204Z
3' end seq. 
>SHB204Z.Seq
NNNNNNNNNNTCGTTTAATTGGTGCTCCACCAGGTTATGTAGGTTATGATCAAGGTGGTT
AATTAACTGAAGCCGTCAGAAGAAGACCATGCAGTGTAGTATTGTTTGATGAAGTTGAAA
AAGCTCATCAACAAGTTTGGAATGTTCTCTTACAAGTATTGGATGAAGGTCGTCTTACCG
ATGGTCAAGGTAGAACCGTAGATTTCTCAAATGTTGTTATCATTATGACCTCAAATTTAG
GTAGTCAATACATCCTTGGTGAACAAGCAAACAAAGAAGGTGGTAACAACTCTTTATCAC
AAGCTTGTAAAGATAAAGTCATTGATGAAGTTAGAAAACATTTCCGTCCAGAGTTTTTAA
ATCGTCTCGATGATATAATTGTCTTTACTCCATTGAGTAAAGAAAACCTTCATAGTATTA
TTACTCTTCAATTAAGATCCGTCGAAAAGAGATTAGAAGATCAAAATATGTCTTTAAAGA
TTTCAAACGATGCTTTAGATTCAATTATCAATGCTGCATATGATCCAATCTTTGGTGGTA
GACCATTGAAACGTTACATTGAAAAGAATATTGTCACTGAACTTAGTAAACTCATCCTTG
GTGGTAAATTAAAAGAAAATCAAGGTGTTGTTGTCAATGAAAAAGATCATCATCTCAACT
TTGATATTATAGATTTAAAACAACAACAACAACGTCCAGCTTCTCCAACCAAAAAACAAA
AAACTATTAAATAAAAAAAAATAAAAAATAAATAAAATCTATC
Length of 3' end seq. 763
Connected seq. ID SHB204P
Connected seq. 
>SHB204P.Seq
TGTTGGCCTACTGGTTTTTTATTTTTTGTAAACATATTATTTTCTGTAAATAAATCATAT
AATTTTTCAACATACATATATATATATATATTTTTAAAATAAAATAAAATAAAAATGTCA
TTTAATCCAGAAGAATTTACTGATAAAACAAATACAATTTTGTTAAGAACTCAAGAATTG
GCAAGAGAAAAATCAAATGTACAATTAGCACCAATACATTTGGCTGTTACATTATTAAAT
GATGAAGATAATTTAGCAAAATCTATATTTGAAAAAGCTGGTGGAGATGTACCAAAAATT
GATGCTGGTTTTAAAAGATTATTGGCCAAACAACCTGTTCAAAATCCAGTACCACCTGAA
ATTTCTCCAAATTCATTATTTTTACAAGTTTTAAGATCAGCAGCACGTCATCAAAAGAAT
AATGGTGATTCTCATTTAGCAGTTGACCATTTAATATTGGGATTATTGGATGATAGAGAT
ATATTATCAGTATTGGGAGATGCTGGTGCAACCAAAGAACAAGTTATACAAGCAGTTAAA
GAGATTAGAGGAAATAAAAAGATTACAAGTAAAACTGCAGAATCTACCTATGAAGCATTA
TCAAAATATGGTT----------TCGTTTAATTGGTGCTCCACCAGGTTATGTAGGTTAT
GATCAAGGTGGTTAATTAACTGAAGCCGTCAGAAGAAGACCATGCAGTGTAGTATTGTTT
GATGAAGTTGAAAAAGCTCATCAACAAGTTTGGAATGTTCTCTTACAAGTATTGGATGAA
GGTCGTCTTACCGATGGTCAAGGTAGAACCGTAGATTTCTCAAATGTTGTTATCATTATG
ACCTCAAATTTAGGTAGTCAATACATCCTTGGTGAACAAGCAAACAAAGAAGGTGGTAAC
AACTCTTTATCACAAGCTTGTAAAGATAAAGTCATTGATGAAGTTAGAAAACATTTCCGT
CCAGAGTTTTTAAATCGTCTCGATGATATAATTGTCTTTACTCCATTGAGTAAAGAAAAC
CTTCATAGTATTATTACTCTTCAATTAAGATCCGTCGAAAAGAGATTAGAAGATCAAAAT
ATGTCTTTAAAGATTTCAAACGATGCTTTAGATTCAATTATCAATGCTGCATATGATCCA
ATCTTTGGTGGTAGACCATTGAAACGTTACATTGAAAAGAATATTGTCACTGAACTTAGT
AAACTCATCCTTGGTGGTAAATTAAAAGAAAATCAAGGTGTTGTTGTCAATGAAAAAGAT
CATCATCTCAACTTTGATATTATAGATTTAAAACAACAACAACAACGTCCAGCTTCTCCA
ACCAAAAAACAAAAAACTATTAAATAAAAAAAAATAAAAAATAAATAAAATCTATC
Length of connected seq. 1366
Full length Seq ID -
Full length Seq. -
Length of full length seq. -