SHB195
Library SH
(Link to library)
Clone ID SHB195
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16313-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SHB195 (SHB195Q) /CSM/SH/SHB1-D/SHB195Q.Seq.d/
XXXXXXXXXXATCAGATGATGCATGTAATTTACAAGTATGTTCTGAAACTGGAGATAGTT
GTCTTACAATGGTTTTAAATTGTGATGATAATAACGATTGTACTGAAGATAAGTGTTTAA
ATACTGGTATTTGTCAAAATAATCCAATTGACGGTTGTGTTACACCATCACCAGTTTCAA
TTGGTGGAACTATCCCTCCAACCACTACTGGTGTATCACAAGTTGAGTGTGATTGTTGTC
CAATTGGTCAAAAATGTTTATTAGTCAATGGTCATGAAATTTGTATTAAACCAGCAACCA
CTGGTGGTATTCCAGAATTAACTACTGGTTGTGCTGGTACAACAACTGGCAGGGCTACAG
GTCATTACACAGAATCAGGTACAGGTAATCCACATTTATGTGATAGATATCATTGTAAAA
GAGGAATGGAATGTCATGTTGTTAATGGTGTTCCAGAATGTTTACCATCAAACTACAAAT
GTTTAGATTGTTTAGATCTTCATTGTGAGAGACAAGGTGATTTCACCTGTTTTATGGTTA
AAAATCCAAATTTCATTTCTAGTAAACATAGTTGTTATGGTGAATCATGTTGTAAATTCA
CACCAGTTTGCAAACCAAAAGGNCACTCCNTTTAAAAA
sequence update 2002. 9.10
Translated Amino Acid sequence
---SDDACNLQVCSETGDSCLTMVLNCDDNNDCTEDKCLNTGICQNNPIDGCVTPSPVSI
GGTIPPTTTGVSQVECDCCPIGQKCLLVNGHEICIKPATTGGIPELTTGCAGTTTGRATG
HYTESGTGNPHLCDRYHCKRGMECHVVNGVPECLPSNYKCLDCLDLHCERQGDFTCFMVK
NPNFISSKHSCYGESCCKFTPVCKPKGHSX*k


Translated Amino Acid sequence (All Frames)
Frame A:
---SDDACNLQVCSETGDSCLTMVLNCDDNNDCTEDKCLNTGICQNNPIDGCVTPSPVSI
GGTIPPTTTGVSQVECDCCPIGQKCLLVNGHEICIKPATTGGIPELTTGCAGTTTGRATG
HYTESGTGNPHLCDRYHCKRGMECHVVNGVPECLPSNYKCLDCLDLHCERQGDFTCFMVK
NPNFISSKHSCYGESCCKFTPVCKPKGHSX*k


Frame B:
---qmmhviykyvlkleivvlqwf*ivmiitivlkisv*ilvfvkiiqltvvlhhhqfql
velslqpllvyhklsvivvqlvknvy*smvmkfvlnqqplvvfqn*llvvlvqqlaglqv
itqnqvqvihiyvidiivkeewnvmllmvfqnvyhqttnv*iv*ifivrdkvispvlwlk
iqisflvnivvmvnhvvnshqfanqkxtpfk


Frame C:
---r*cm*ftsmf*nwr*lsyngfkl****rly*r*vfkywylsk*sn*rlcytitsfnw
wnypsnhywcits*v*llsnwskmfisqws*nly*tsnhwwysrinywlcwynnwqgyrs
lhriryr*stfm**isl*krngmscc*wcsrmftiklqmfrlfrssl*etr*fhlfyg*k
skfhf**t*llw*iml*ihtslqtkrxlxlk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHB195 (SHB195Q) /CSM/SH/SHB1-D/SHB195Q.Seq.d/ 1233 0.0
SHJ886 (SHJ886Q) /CSM/SH/SHJ8-D/SHJ886Q.Seq.d/ 1225 0.0
SHG326 (SHG326Q) /CSM/SH/SHG3-B/SHG326Q.Seq.d/ 1225 0.0
SHC693 (SHC693Q) /CSM/SH/SHC6-D/SHC693Q.Seq.d/ 1225 0.0
SHB522 (SHB522Q) /CSM/SH/SHB5-A/SHB522Q.Seq.d/ 1225 0.0
SHB423 (SHB423Q) /CSM/SH/SHB4-A/SHB423Q.Seq.d/ 1225 0.0
SHA693 (SHA693Q) /CSM/SH/SHA6-D/SHA693Q.Seq.d/ 1225 0.0
CHG220 (CHG220Q) /CSM/CH/CHG2-A/CHG220Q.Seq.d/ 1225 0.0
AHE486 (AHE486Q) /CSM/AH/AHE4-D/AHE486Q.Seq.d/ 1225 0.0
AHB727 (AHB727Q) /CSM/AH/AHB7-B/AHB727Q.Seq.d/ 1225 0.0

own update 2002.10.14
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC020547|AC020547.7 Homo sapiens BAC clone RP11-134F3 from 2, complete sequence. 46 0.88 1
AL161506|AL161506.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 18. 42 1.2 3
AC168497|AC168497.2 Strongylocentrotus purpuratus clone R3-3117D9, WORKING DRAFT SEQUENCE, 23 unordered pieces. 34 1.7 2
CV752175|CV752175.1 SJL6-009_A06_SJL6-009A06-T3_039.ab1 SJL Schistosoma japonicum cDNA, mRNA sequence. 44 3.5 1
CV752026|CV752026.1 SJL6-007_B08_SJL6-007B08-T3_063.ab1 SJL Schistosoma japonicum cDNA, mRNA sequence. 44 3.5 1
CV739281|CV739281.1 SJAL_019_73.T3 SJL Schistosoma japonicum cDNA, mRNA sequence. 44 3.5 1
CV682259|CV682259.1 sjs6-009_H10_sjs6-009H10-T3 SJS Schistosoma japonicum cDNA, mRNA sequence. 44 3.5 1
CV739266|CV739266.1 SJAL_019_64.T3 SJL Schistosoma japonicum cDNA, mRNA sequence. 44 3.5 1
CV581768|CV581768.1 sjmi-1-002_E12_sjmi-1-002E12-T3 Schistosoma japonicum miracidium cDNA Schistosoma japonicum cDNA, mRNA sequence. 44 3.5 1
BU725144|BU725144.1 SJMBXF01 SJM Schistosoma japonicum cDNA, mRNA sequence. 44 3.5 1
dna update 2005.12.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54C31) RecName: Full=Protein psiR; Flags: Precursor; 392 e-108
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor; 213 5e-54
AF245486_1(AF245486|pid:none) Polysphondylium pallidum spore coa... 52 1e-05
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos... 47 4e-04
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell... 44 0.003
A27020(A27020)DIF-induced prestalk pDd63 protein precursor - sli... 44 0.003
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste... 44 0.003
S44208(S44208) extracellular matrix protein B - Dictyostelium mi... 44 0.004
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -... 43 0.006
(P14328) RecName: Full=Spore coat protein SP96; &AC117075_49(AC... 43 0.006
protein update 2009. 1.15
PSORT

psg: 0.75 gvh: 0.40 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
40.0 %: nuclear
12.0 %: cytoskeletal
8.0 %: mitochondrial

>> prediction for SHB195 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SHB195Z
3' end seq.
>SHB195Z.Seq
NNNNNNNNNNATCAGATGATGCATGTAATTTACAAGTATGTTCTGAAACTGGAGATAGTT
GTCTTACAATGGTTTTAAATTGTGATGATAATAACGATTGTACTGAAGATAAGTGTTTAA
ATACTGGTATTTGTCAAAATAATCCAATTGACGGTTGTGTTACACCATCACCAGTTTCAA
TTGGTGGAACTATCCCTCCAACCACTACTGGTGTATCACAAGTTGAGTGTGATTGTTGTC
CAATTGGTCAAAAATGTTTATTAGTCAATGGTCATGAAATTTGTATTAAACCAGCAACCA
CTGGTGGTATTCCAGAATTAACTACTGGTTGTGCTGGTACAACAACTGGCAGGGCTACAG
GTCATTACACAGAATCAGGTACAGGTAATCCACATTTATGTGATAGATATCATTGTAAAA
GAGGAATGGAATGTCATGTTGTTAATGGTGTTCCAGAATGTTTACCATCAAACTACAAAT
GTTTAGATTGTTTAGATCTTCATTGTGAGAGACAAGGTGATTTCACCTGTTTTATGGTTA
AAAATCCAAATTTCATTTCTAGTAAACATAGTTGTTATGGTGAATCATGTTGTAAATTCA
CACCAGTTTGCAAACCAAAAGGNCACTCCNTTTAAAAA
Length of 3' end seq. 638
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -