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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHB191
Library SH
(Link to library)
Clone ID SHB191
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16361-1
Original site URL
Representative seq. ID SHB191P
(Link to Original site)
Representative DNA sequence 
>SHB191 (SHB191Q) /CSM/SH/SHB1-D/SHB191Q.Seq.d/
CTGTTGGCCTANGGTANTAATCAAAGTAGTANAAATTTAAAACCAAAACCATCACAAAGC
AATTTGAAATGGATAGCAAGAGATTTAAAAAAGAAATCTGTTAGAAAAGATTCAGAGAGA
AAGTTAAAGAGTAGTGGTGTTTTAAAGAAAAAGAATACTGTGATGGACTTTGGTGAAGAT
GATGGTGGTAGTGGTGACGATGGTAATATAACCGAAGGTTTACCAATTAGTGAAGGTATG
GATGATTTACCATCATCTTCAAACTCTCGTGGCGGCAGCGGTAATGATGAACAAAAGAAA
CAGTTCCCAAAGGAAATGAATTCTCCATCATCGGAATATGGCACAACAAGTGGCGGTCAA
AGATTTGATACATTGGTTGATCCTGATATTAGTTTAGCAGAGATGGAAGAGAAAATGCGT
CAACACAAGGTATACCAAGAGCAACAACAGCAACAACAACAACAGCAACAACAACAAAAG
CAAAAAGATAAAGAGTTGTCATCACAAAAGAAGAAACCATCATCAATGCAATTAAGTAAA
AAGAAACATGTCGCCAAAGAAGATTCTGAAACATTAGAGACAATCATTGGTGAAGAGAAG
XXXXXXXXXXTCTCCATTAATTATGAGTATTTGGACTGTACCAATCGTTGTAAAAGATCC
AATCATTTTCATTCTCGTCGGTATGATTCCTGTAATGGTGTTACCAAGAGTCATTCAATA
TATGATTCTTAGAGCCAAGAGACCTTATGAAGCCGGTAAGAGTGGTCCATCACTTTGGGT
AGAAGCTACTGATCTTTGGAGAGCTGAACAAACTTTCTTTGGTTTTGCTGGTACTTATAT
TTCATCATGGAGAGAAGGTTCCGCTTCAATCGTTAAACTTCTTAAAGCTAGAAAGATTAG
TCGTCATAAGTTAGCCATGTGGAATTGGAAGAGAGATTTCGTAAAGAAACCAGTAGTTTG
TGAAGTTTTCCGTCAAACTAAATTGGTCAATGAAAATGATAATGCTCGAGAATCAAGTGG
TAAACATAAGGCTGAACAATCTTTCCGTACTTCAAACAAAGAATCTGATACCATTAAAAA
TTCAAGACTTTTCCTTCCAAATATTATCCTCTTTGTTGTTAATATCTTGGCTATGATGAG
TGCTGTACTTAGATTTAATTGTTTCCAAAANTGATATGTGGCTTTTGGTTGTCGTAGCTG
GTTTCTCTT
sequence update 2002.10.25
Translated Amino Acid sequence 
LLAXGXNQSSXNLKPKPSQSNLKWIARDLKKKSVRKDSERKLKSSGVLKKKNTVMDFGED
DGGSGDDGNITEGLPISEGMDDLPSSSNSRGGSGNDEQKKQFPKEMNSPSSEYGTTSGGQ
RFDTLVDPDISLAEMEEKMRQHKVYQEQQQQQQQQQQQQKQKDKELSSQKKKPSSMQLSK
KKHVAKEDSETLETIIGEEK---

---SPLIMSIWTVPIVVKDPIIFILVGMIPVMVLPRVIQYMILRAKRPYEAGKSGPSLWV
EATDLWRAEQTFFGFAGTYISSWREGSASIVKLLKARKISRHKLAMWNWKRDFVKKPVVC
EVFRQTKLVNENDNARESSGKHKAEQSFRTSNKESDTIKNSRLFLPNIILFVVNILAMMS
AVLRFNCFQX*yvafgcrswfl
Translated Amino Acid sequence (All Frames) 
Frame A:
LLAXGXNQSSXNLKPKPSQSNLKWIARDLKKKSVRKDSERKLKSSGVLKKKNTVMDFGED
DGGSGDDGNITEGLPISEGMDDLPSSSNSRGGSGNDEQKKQFPKEMNSPSSEYGTTSGGQ
RFDTLVDPDISLAEMEEKMRQHKVYQEQQQQQQQQQQQQKQKDKELSSQKKKPSSMQLSK
KKHVAKEDSETLETIIGEEK---

---SPLIMSIWTVPIVVKDPIIFILVGMIPVMVLPRVIQYMILRAKRPYEAGKSGPSLWV
EATDLWRAEQTFFGFAGTYISSWREGSASIVKLLKARKISRHKLAMWNWKRDFVKKPVVC
EVFRQTKLVNENDNARESSGKHKAEQSFRTSNKESDTIKNSRLFLPNIILFVVNILAMMS
AVLRFNCFQX*yvafgcrswfl

Frame B:
cwpxvxikvvxi*nqnhhkai*ng*qei*krnllekiqres*rvvvf*rkril*wtlvkm
mvvvvtmvi*pkvyqlvkvwmiyhhlqtlvaaavmmnkrnssqrk*ilhhrnmaqqvavk
dlihwlililv*qrwkrkcvntrytksnnsnnnnsnnnkskkikschhkrrnhhqcn*vk
rnmspkkilkh*rqslvkr---

---lh*l*vfglyqsl*kiqsfsfssv*fl*wcyqesfni*fleprdlmkpvrvvhhfg*
kllifgelnklslvllvlifhhgekvplqslnflklerlvvis*pcgigreis*rnq*fv
kfsvklnwsmkmimlenqvvnirlnnlsvlqtknliplkiqdfsfqilssllliswl**v
lyldlivskxdmwllvvvagfs

Frame C:
vglxx*sk*xkfktktitkqfemdskrfkkeic*krfrekvke*wcfkekeycdglw*r*
ww*w*rw*ynrrftn**ryg*ftiifklswrqr***tketvpkgnefsiigiwhnkwrsk
i*yig*s*y*fsrdgrenastqgiprattattttatttkakr*rvvitkeetiinaik*k
etcrqrrf*nirdnhw*re---

---sinyeyldctnrckrsnhfhsrrydscngvtkshsiyds*sqetl*sr*ewsitlgr
sy*sles*tnflwfcwylyfimerrfrfnr*ts*s*kd*ss*vshveleerfrketssl*
sfpsn*igq*k**csrikw*t*g*tifpyfkqri*yh*kfktfpskyyplcc*ylgydec
ct*i*lfpkxicgfwls*lvsl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHB191 (SHB191Q) /CSM/SH/SHB1-D/SHB191Q.Seq.d/                       1386   0.0
SHA591 (SHA591Q) /CSM/SH/SHA5-D/SHA591Q.Seq.d/                       1172   0.0
AHO874 (AHO874Q) /CSM/AH/AHO8-D/AHO874Q.Seq.d/                       1164   0.0
SHK508 (SHK508Q) /CSM/SH/SHK5-A/SHK508Q.Seq.d/                       1164   0.0
SHK418 (SHK418Q) /CSM/SH/SHK4-A/SHK418Q.Seq.d/                       1164   0.0
SHG755 (SHG755Q) /CSM/SH/SHG7-C/SHG755Q.Seq.d/                       1164   0.0
SHG576 (SHG576Q) /CSM/SH/SHG5-D/SHG576Q.Seq.d/                       1164   0.0
SHG522 (SHG522Q) /CSM/SH/SHG5-A/SHG522Q.Seq.d/                       1164   0.0
SHG486 (SHG486Q) /CSM/SH/SHG4-D/SHG486Q.Seq.d/                       1164   0.0
SHG409 (SHG409Q) /CSM/SH/SHG4-A/SHG409Q.Seq.d/                       1164   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF163835|AF163835.1 Dictyostelium discoideum cellulose synthase (dcsA) mRNA, complete cds.  1102   0.0    2
AC006097|AC006097.1 Homo sapiens chromosome 10 clone CIT987SK-1031G15 map 10q25, *** SEQUENCING IN PROGRESS ***, 1 ordered pieces.    54   0.007  1
AC004480|AC004480.7 Homo sapiens chromosome 4, WORKING DRAFT SEQUENCE, 7 unordered pieces.    54   0.007  1
AC093323|AC093323.3 Homo sapiens BAC clone RP11-539L10 from 4, complete sequence.    54   0.007  1
AL390197|AL390197.19 Human DNA sequence from clone RP11-190F19 on chromosome 10.    54   0.007  1
AC154396|AC154396.11 Mus musculus chromosome 3, clone RP24-254D5, complete sequence.    36   0.24   2
CX080440|CX080440.1 EHAA717TR E. histolytica Normalized cDNA library Entamoeba histolytica cDNA, mRNA sequence.    48   0.43   1
CX098227|CX098227.1 EHAHI57TR E. histolytica Normalized cDNA library Entamoeba histolytica cDNA, mRNA sequence.    48   0.43   1
CX080439|CX080439.1 EHAA717TF E. histolytica Normalized cDNA library Entamoeba histolytica cDNA, mRNA sequence.    48   0.43   1
CX096781|CX096781.1 EHAGX29TR E. histolytica Normalized cDNA library Entamoeba histolytica cDNA, mRNA sequence.    48   0.43   1
dna update 2005.12.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9U720) RecName: Full=Cellulose synthase catalytic subunit A [U...   372   e-103
CP001279_992(CP001279|pid:none) Nautilia profundicola AmH, compl...    40   0.21
CP001025_1222(CP001025|pid:none) Burkholderia ambifaria MC40-6 c...    35   3.9
CP000431_1654(CP000431|pid:none) Rhodococcus jostii RHA1, comple...    35   6.6
CP001089_445(CP001089|pid:none) Geobacter lovleyi SZ, complete g...    34   8.6
protein update 2009. 4.15
PSORT 

 psg: 0.75  gvh: 0.37  alm: 0.23  top: 0.73  tms: 0.13  mit: 0.33  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 20.0 %: plasma membrane
	 16.0 %: nuclear
	 16.0 %: vacuolar
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for SHB191 is end
5' end seq. ID SHB191F
5' end seq. 
>SHB191F.Seq
CTGTTGGCCTANGGTANTAATCAAAGTAGTANAAATTTAAAACCAAAACCATCACAAAGC
AATTTGAAATGGATAGCAAGAGATTTAAAAAAGAAATCTGTTAGAAAAGATTCAGAGAGA
AAGTTAAAGAGTAGTGGTGTTTTAAAGAAAAAGAATACTGTGATGGACTTTGGTGAAGAT
GATGGTGGTAGTGGTGACGATGGTAATATAACCGAAGGTTTACCAATTAGTGAAGGTATG
GATGATTTACCATCATCTTCAAACTCTCGTGGCGGCAGCGGTAATGATGAACAAAAGAAA
CAGTTCCCAAAGGAAATGAATTCTCCATCATCGGAATATGGCACAACAAGTGGCGGTCAA
AGATTTGATACATTGGTTGATCCTGATATTAGTTTAGCAGAGATGGAAGAGAAAATGCGT
CAACACAAGGTATACCAAGAGCAACAACAGCAACAACAACAACAGCAACAACAACAAAAG
CAAAAAGATAAAGAGTTGTCATCACAAAAGAAGAAACCATCATCAATGCAATTAAGTAAA
AAGAAACATGTCGCCAAAGAAGATTCTGAAACATTAGAGACAATCATTGGTGAAGAGAAG
NNNNNNNNNN
Length of 5' end seq. 610
3' end seq. ID SHB191Z
3' end seq. 
>SHB191Z.Seq
NNNNNNNNNNTCTCCATTAATTATGAGTATTTGGACTGTACCAATCGTTGTAAAAGATCC
AATCATTTTCATTCTCGTCGGTATGATTCCTGTAATGGTGTTACCAAGAGTCATTCAATA
TATGATTCTTAGAGCCAAGAGACCTTATGAAGCCGGTAAGAGTGGTCCATCACTTTGGGT
AGAAGCTACTGATCTTTGGAGAGCTGAACAAACTTTCTTTGGTTTTGCTGGTACTTATAT
TTCATCATGGAGAGAAGGTTCCGCTTCAATCGTTAAACTTCTTAAAGCTAGAAAGATTAG
TCGTCATAAGTTAGCCATGTGGAATTGGAAGAGAGATTTCGTAAAGAAACCAGTAGTTTG
TGAAGTTTTCCGTCAAACTAAATTGGTCAATGAAAATGATAATGCTCGAGAATCAAGTGG
TAAACATAAGGCTGAACAATCTTTCCGTACTTCAAACAAAGAATCTGATACCATTAAAAA
TTCAAGACTTTTCCTTCCAAATATTATCCTCTTTGTTGTTAATATCTTGGCTATGATGAG
TGCTGTACTTAGATTTAATTGTTTCCAAAANTGATATGTGGCTTTTGGTTGTCGTAGCTG
GTTTCTCTT
Length of 3' end seq. 609
Connected seq. ID SHB191P
Connected seq. 
>SHB191P.Seq
CTGTTGGCCTANGGTANTAATCAAAGTAGTANAAATTTAAAACCAAAACCATCACAAAGC
AATTTGAAATGGATAGCAAGAGATTTAAAAAAGAAATCTGTTAGAAAAGATTCAGAGAGA
AAGTTAAAGAGTAGTGGTGTTTTAAAGAAAAAGAATACTGTGATGGACTTTGGTGAAGAT
GATGGTGGTAGTGGTGACGATGGTAATATAACCGAAGGTTTACCAATTAGTGAAGGTATG
GATGATTTACCATCATCTTCAAACTCTCGTGGCGGCAGCGGTAATGATGAACAAAAGAAA
CAGTTCCCAAAGGAAATGAATTCTCCATCATCGGAATATGGCACAACAAGTGGCGGTCAA
AGATTTGATACATTGGTTGATCCTGATATTAGTTTAGCAGAGATGGAAGAGAAAATGCGT
CAACACAAGGTATACCAAGAGCAACAACAGCAACAACAACAACAGCAACAACAACAAAAG
CAAAAAGATAAAGAGTTGTCATCACAAAAGAAGAAACCATCATCAATGCAATTAAGTAAA
AAGAAACATGTCGCCAAAGAAGATTCTGAAACATTAGAGACAATCATTGGTGAAGAGAAG
----------TCTCCATTAATTATGAGTATTTGGACTGTACCAATCGTTGTAAAAGATCC
AATCATTTTCATTCTCGTCGGTATGATTCCTGTAATGGTGTTACCAAGAGTCATTCAATA
TATGATTCTTAGAGCCAAGAGACCTTATGAAGCCGGTAAGAGTGGTCCATCACTTTGGGT
AGAAGCTACTGATCTTTGGAGAGCTGAACAAACTTTCTTTGGTTTTGCTGGTACTTATAT
TTCATCATGGAGAGAAGGTTCCGCTTCAATCGTTAAACTTCTTAAAGCTAGAAAGATTAG
TCGTCATAAGTTAGCCATGTGGAATTGGAAGAGAGATTTCGTAAAGAAACCAGTAGTTTG
TGAAGTTTTCCGTCAAACTAAATTGGTCAATGAAAATGATAATGCTCGAGAATCAAGTGG
TAAACATAAGGCTGAACAATCTTTCCGTACTTCAAACAAAGAATCTGATACCATTAAAAA
TTCAAGACTTTTCCTTCCAAATATTATCCTCTTTGTTGTTAATATCTTGGCTATGATGAG
TGCTGTACTTAGATTTAATTGTTTCCAAAANTGATATGTGGCTTTTGGTTGTCGTAGCTG
GTTTCTCTT
Length of connected seq. 1199
Full length Seq ID -
Full length Seq. -
Length of full length seq. -