SHB190
Library SH
(Link to library)
Clone ID SHB190
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15748-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SHB190 (SHB190Q) /CSM/SH/SHB1-D/SHB190Q.Seq.d/
XXXXXXXXXXGTTTGGCTTACACAAGTGATGCTCATATCGTCAATGGCACTATTGTTGCC
TCAAGATTCGATGGTTATCATACAACTCTTAGAACTCAAGATGATTATATCAATGCAGTT
CAAACCGCTTATTATTTGGCCGATAATTCCGATCTCGATGTAGAGGTTTATTCAATCATT
TATGTTTACTTTGATCAATATCTAACAATCAAGAGTGTAGCAATAATGGATATCCTTTTG
GCATTGGGTGGTGTATTTATTGTTTGTCTCATTTTACTATTGAATCCATTGGTTTCTTTC
TTGGTTGTAATTTCCGTTGGTATGATTTGTGTCGATTTATTAGGTATCATGGCATTATGG
AACATCTCTTTGAATGCAGTTTCCGTTGTAAACGTTGTTATGGCCATTGGTATTGGTATC
GAGTTTTGTGTTCACATTGCTTCAACCTTTATCAATGCTCCAAAACATTTCTCAAGAGAT
CAAAAAGCAAAATATGCCGTCACTGAGATGGGTAGTTCCATCATTAGTGGTATCTTTATC
ACAAAATTATTGGGTGTCGTGGTTTTAGGTTTCTCAACTTCAGAAATTTTCACTGTTTAT
TACTTTAGAATGTATCTCAGTATAGTTTTCTTGGGCGGTTTACATGG
sequence update 2002. 9.10
Translated Amino Acid sequence
---LAYTSDAHIVNGTIVASRFDGYHTTLRTQDDYINAVQTAYYLADNSDLDVEVYSIIY
VYFDQYLTIKSVAIMDILLALGGVFIVCLILLLNPLVSFLVVISVGMICVDLLGIMALWN
ISLNAVSVVNVVMAIGIGIEFCVHIASTFINAPKHFSRDQKAKYAVTEMGSSIISGIFIT
KLLGVVVLGFSTSEIFTVYYFRMYLSIVFLGGLH


Translated Amino Acid sequence (All Frames)
Frame A:
---fglhk*csyrqwhycclkirwlsyns*nsr*lyqcssnrllfgr*frsrcrglfnhl
cll*sisnnqecsnngypfgigwciyclshftiesigfflgcnfrwydlcrfiryhgime
hlfecsfrckrcyghwywyrvlcshcfnlyqcsktflkrskskicrh*dg*fhh*wylyh
kiigcrgfrflnfrnfhclll*nvsqysflgrftw


Frame B:
---LAYTSDAHIVNGTIVASRFDGYHTTLRTQDDYINAVQTAYYLADNSDLDVEVYSIIY
VYFDQYLTIKSVAIMDILLALGGVFIVCLILLLNPLVSFLVVISVGMICVDLLGIMALWN
ISLNAVSVVNVVMAIGIGIEFCVHIASTFINAPKHFSRDQKAKYAVTEMGSSIISGIFIT
KLLGVVVLGFSTSEIFTVYYFRMYLSIVFLGGLH


Frame C:
---wltqvmlissmalllpqdsmviiqllelkmiismqfkpliiwpiipism*rfiqsfm
ftlini*qsrv*q*wisfwhwvvyllfvsfyy*ihwflswl*fplv*fvsiy*vswhygt
sl*mqfpl*tllwplvlvssfvftllqplsmlqnisqeikkqnmpslrwvvpslvvslsq
nywvswf*vsqlqkfslfitlecisv*fswavym


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHB190 (SHB190Q) /CSM/SH/SHB1-D/SHB190Q.Seq.d/ 1263 0.0
SHG328 (SHG328Q) /CSM/SH/SHG3-B/SHG328Q.Seq.d/ 1255 0.0
SHD228 (SHD228Q) /CSM/SH/SHD2-B/SHD228Q.Seq.d/ 1255 0.0
CHH472 (CHH472Q) /CSM/CH/CHH4-C/CHH472Q.Seq.d/ 1255 0.0
VHI844 (VHI844Q) /CSM/VH/VHI8-B/VHI844Q.Seq.d/ 1247 0.0
SHG768 (SHG768Q) /CSM/SH/SHG7-C/SHG768Q.Seq.d/ 1247 0.0
AHQ411 (AHQ411Q) /CSM/AH/AHQ4-A/AHQ411Q.Seq.d/ 1247 0.0
AHO583 (AHO583Q) /CSM/AH/AHO5-D/AHO583Q.Seq.d/ 1247 0.0
SHJ888 (SHJ888Q) /CSM/SH/SHJ8-D/SHJ888Q.Seq.d/ 1245 0.0
SHE211 (SHE211Q) /CSM/SH/SHE2-A/SHE211Q.Seq.d/ 1245 0.0

own update 2003. 6. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF202726|AF202726.1 Dictyostelium discoideum NPC1 protein gene, complete cds. 1255 0.0 1
AF202725|AF202725.1 Dictyostelium discoideum NPC1 protein mRNA, complete cds. 1255 0.0 1
AC157464|AC157464.2 Rhinolophus ferrumequinum clone VMRC7-228A4, WORKING DRAFT SEQUENCE, 4 ordered pieces. 48 0.23 1
AC112346|AC112346.3 Rattus norvegicus clone CH230-302F3, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces. 46 0.89 1
AC099139|AC099139.5 Rattus norvegicus clone CH230-51D9, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces. 46 0.89 1
BZ003024|BZ003024.1 oeh85e11.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence. 34 1.7 2
CV591086|CV591086.1 L_AM-aaa17b02.b1 Hc6AS_Y Ajellomyces capsulatus cDNA 3', mRNA sequence. 34 3.9 2
CV717675|CV717675.1 UCRCS08_0009G03_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0009G03, mRNA sequence. 34 6.6 2
AC106552|AC106552.3 Rattus norvegicus clone CH230-156G24, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces. 38 9.2 4

dna update 2005.12.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF202725_1(AF202725|pid:none) Dictyostelium discoideum NPC1 prot... 411 e-114
AC025815_1(AC025815|pid:none) Arabidopsis thaliana chromosome 1 ... 181 1e-44
AL606694_11(AL606694|pid:none) Oryza sativa genomic DNA, chromos... 180 3e-44
AF182744_1(AF182744|pid:none) Cricetulus griseus Niemann-Pick ty... 174 2e-42
AF503634_1(AF503634|pid:none) Felis catus Niemann-Pick C1 mRNA, ... 171 2e-41
AF258783_1(AF258783|pid:none) Felis catus Niemann-Pick type C1 d... 171 2e-41
BC151276_1(BC151276|pid:none) Bos taurus Niemann-Pick disease, t... 171 2e-41
AF299073_1(AF299073|pid:none) Bos taurus Niemann-Pick type C1 di... 171 2e-41
(P56941) RecName: Full=Niemann-Pick C1 protein; Flags: Precursor... 169 6e-41
AB209048_1(AB209048|pid:none) Homo sapiens mRNA for Niemann-Pick... 168 1e-40
protein update 2009. 5.28
PSORT

psg: 0.75 gvh: 0.27 alm: 0.10 top: 0.53 tms: 0.27 mit: 0.23 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

40.0 %: plasma membrane
32.0 %: endoplasmic reticulum
12.0 %: mitochondrial
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: nuclear
4.0 %: vesicles of secretory system

>> prediction for SHB190 is pla

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SHB190Z
3' end seq.
>SHB190Z.Seq
NNNNNNNNNNGTTTGGCTTACACAAGTGATGCTCATATCGTCAATGGCACTATTGTTGCC
TCAAGATTCGATGGTTATCATACAACTCTTAGAACTCAAGATGATTATATCAATGCAGTT
CAAACCGCTTATTATTTGGCCGATAATTCCGATCTCGATGTAGAGGTTTATTCAATCATT
TATGTTTACTTTGATCAATATCTAACAATCAAGAGTGTAGCAATAATGGATATCCTTTTG
GCATTGGGTGGTGTATTTATTGTTTGTCTCATTTTACTATTGAATCCATTGGTTTCTTTC
TTGGTTGTAATTTCCGTTGGTATGATTTGTGTCGATTTATTAGGTATCATGGCATTATGG
AACATCTCTTTGAATGCAGTTTCCGTTGTAAACGTTGTTATGGCCATTGGTATTGGTATC
GAGTTTTGTGTTCACATTGCTTCAACCTTTATCAATGCTCCAAAACATTTCTCAAGAGAT
CAAAAAGCAAAATATGCCGTCACTGAGATGGGTAGTTCCATCATTAGTGGTATCTTTATC
ACAAAATTATTGGGTGTCGTGGTTTTAGGTTTCTCAACTTCAGAAATTTTCACTGTTTAT
TACTTTAGAATGTATCTCAGTATAGTTTTCTTGGGCGGTTTACATGG
Length of 3' end seq. 647
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -