>SHB182 (SHB182Q) /CSM/SH/SHB1-D/SHB182Q.Seq.d/
XXXXXXXXXXACACTTACAAATAAACAAACAGCAACTCCATTCAAACCACCAAGTGAAAT
GTTATCAAGTATTACATATTTCGAATCTTTCTACAAAAAAAGTTACCAAGGTAGAGTTTT
AACTTTCCTTTACGATTTTTCAAGAGCTGATGTTGACTCAAGACAAGCCAAAGGAAAAAT
ATATAAACTTACAACTACAGCATACCAAATGGCAATTTTATTAATGTTTAATGGAGCAGA
TAAGATTACTAGATTCCTTATTAATGATACAATTGGTTTAGATGAAACATCAATTCGTCT
TCCATTATTAGCTTTAATCAAAACAGGTATTATTGAGTGTTCAGAACCAAGCTTCAAGAA
TTGGAACAACGATACTGAATTCACTGTAAATTCTAAATTCAGTTCAAAGAAGATGAAGGT
CAGCTGTAATATTGCTGTTCAAATTGGTGAAACTAAACAATCAGAAGGTCAACAAACTGT
CAGCGAACAAGAAATTGAAAAAGAACGTTTCTTCAAACTTCAAGCTGCCATTGTACGTAT
TATGAAATCTAAAAAGACAATGACTCACAATGATCTCACTGTGGAAACATACCACTTAAG
TCAGCAAATGGTTCACACCAAAGATCNCTGCCATTAAAAAGGCGATCGAATACCTCATCG
ACCAAGAATACATTAGAAGAAC

---LTNKQTATPFKPPSEMLSSITYFESFYKKSYQGRVLTFLYDFSRADVDSRQAKGKIY
KLTTTAYQMAILLMFNGADKITRFLINDTIGLDETSIRLPLLALIKTGIIECSEPSFKNW
NNDTEFTVNSKFSSKKMKVSCNIAVQIGETKQSEGQQTVSEQEIEKERFFKLQAAIVRIM
KSKKTMTHNDLTVETYHLSQQMVHTKDXCH*kgdriphrprih*kn

Frame A:
---hlqinkqqlhsnhqvkcyqvlhisnlstkkvtkvef*lsftifqelmltqdkpkeky
inlqlqhtkwqfy*clmeqirlldsllmiqlv*mkhqfvfhy*l*skqvllsvqnqasri
gttilnsl*ilnsvqrr*rsavillfklvklnnqkvnklsankklkknvssnfklplyvl
*nlkrq*ltmislwkhtt*vskwftpkixaikkaieylidqeyirr


Frame B:
---tyk*tnsnsiqttk*nvikyyifriflqkklpr*sfnfplrffks*c*lktsqrkni
*tynysipngnfinv*wsr*dy*ipy**ynwfr*ninsssiisfnqnryy*vfrtklqel
eqry*ihckf*iqfkedegql*yccsnw*n*tirrstncqrtrn*krtflqtsschctyy
ei*kdndsq*shcgniplksangshqrslplkrrsntsstkntlee


Frame C:
---LTNKQTATPFKPPSEMLSSITYFESFYKKSYQGRVLTFLYDFSRADVDSRQAKGKIY
KLTTTAYQMAILLMFNGADKITRFLINDTIGLDETSIRLPLLALIKTGIIECSEPSFKNW
NNDTEFTVNSKFSSKKMKVSCNIAVQIGETKQSEGQQTVSEQEIEKERFFKLQAAIVRIM
KSKKTMTHNDLTVETYHLSQQMVHTKDXCH*kgdriphrprih*kn

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHB182 (SHB182Q) /CSM/SH/SHB1-D/SHB182Q.Seq.d/                       1285   0.0
VHP693 (VHP693Q) /CSM/VH/VHP6-D/VHP693Q.Seq.d/                       1261   0.0
VHP636 (VHP636Q) /CSM/VH/VHP6-B/VHP636Q.Seq.d/                       1261   0.0
VHP488 (VHP488Q) /CSM/VH/VHP4-D/VHP488Q.Seq.d/                       1261   0.0
VHN223 (VHN223Q) /CSM/VH/VHN2-A/VHN223Q.Seq.d/                       1261   0.0
VHM669 (VHM669Q) /CSM/VH/VHM6-C/VHM669Q.Seq.d/                       1261   0.0
VHM661 (VHM661Q) /CSM/VH/VHM6-C/VHM661Q.Seq.d/                       1261   0.0
VHK869 (VHK869Q) /CSM/VH/VHK8-C/VHK869Q.Seq.d/                       1261   0.0
VHK661 (VHK661Q) /CSM/VH/VHK6-C/VHK661Q.Seq.d/                       1261   0.0
VHK368 (VHK368Q) /CSM/VH/VHK3-C/VHK368Q.Seq.d/                       1261   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE007824|AE007824.1 Clostridium acetobutylicum ATCC 824 section 312 of 356 of the complete genome.    48   0.24   1
AC167050|AC167050.1 Bos taurus clone CH240-108E22, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces.    46   0.94   1
CC588869|CC588869.1 CH240_387A10.TARBAC13P2 CHORI-240 Bos taurus genomic clone CH240_387A10, genomic survey sequence.    46   0.94   1
BX005438|BX005438.16 Zebrafish DNA sequence from clone DKEY-3E9 in linkage group 9.    38   2.2    4
AC025530|AC025530.4 Homo sapiens chromosome 8 clone RP11-60C8, WORKING DRAFT SEQUENCE, 15 unordered pieces.    44   3.7    1
CR769778|CR769778.10 Zebrafish DNA sequence from clone CH211-147N12 in linkage group 18.    44   3.7    1
AC091559|AC091559.7 Homo sapiens chromosome 8, clone RP11-60C8, complete sequence.    44   3.7    1
AP000977|AP000977.4 Homo sapiens genomic DNA, chromosome 11q, clone:RP11-730K11.    36   5.9    4
AG087553|AG087553.1 Pan troglodytes DNA, clone: PTB-086D21.F.      38   7.0    2
AC101556|AC101556.1 Mus musculus clone RP23-194C18, LOW-PASS SEQUENCE SAMPLING.    40   8.5    2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU633897_277(CU633897|pid:none) Podospora anserina genomic DNA c...   101   8e-24
FB802359_1(FB802359|pid:none) Sequence 21632 from Patent WO20080...   103   2e-22
AK072402_1(AK072402|pid:none) Oryza sativa Japonica Group cDNA c...   103   2e-22
CR382130_516(CR382130|pid:none) Yarrowia lipolytica strain CLIB1...    98   3e-22
AL606454_2(AL606454|pid:none) Oryza sativa genomic DNA, chromoso...   102   3e-22
AE014134_3634(AE014134|pid:none) Drosophila melanogaster chromos...    95   4e-22
AE017356_115(AE017356|pid:none) Cryptococcus neoformans var. neo...    85   5e-22
FB802423_1(FB802423|pid:none) Sequence 21696 from Patent WO20080...    93   1e-21
FB802477_1(FB802477|pid:none) Sequence 21750 from Patent WO20080...   101   2e-21
BT069454_1(BT069454|pid:none) Zea mays full-length cDNA clone ZM...   101   2e-21

 psg: 0.75  gvh: 0.50  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SHB182 is cyt

>SHB182Z.Seq
NNNNNNNNNNACACTTACAAATAAACAAACAGCAACTCCATTCAAACCACCAAGTGAAAT
GTTATCAAGTATTACATATTTCGAATCTTTCTACAAAAAAAGTTACCAAGGTAGAGTTTT
AACTTTCCTTTACGATTTTTCAAGAGCTGATGTTGACTCAAGACAAGCCAAAGGAAAAAT
ATATAAACTTACAACTACAGCATACCAAATGGCAATTTTATTAATGTTTAATGGAGCAGA
TAAGATTACTAGATTCCTTATTAATGATACAATTGGTTTAGATGAAACATCAATTCGTCT
TCCATTATTAGCTTTAATCAAAACAGGTATTATTGAGTGTTCAGAACCAAGCTTCAAGAA
TTGGAACAACGATACTGAATTCACTGTAAATTCTAAATTCAGTTCAAAGAAGATGAAGGT
CAGCTGTAATATTGCTGTTCAAATTGGTGAAACTAAACAATCAGAAGGTCAACAAACTGT
CAGCGAACAAGAAATTGAAAAAGAACGTTTCTTCAAACTTCAAGCTGCCATTGTACGTAT
TATGAAATCTAAAAAGACAATGACTCACAATGATCTCACTGTGGAAACATACCACTTAAG
TCAGCAAATGGTTCACACCAAAGATCNCTGCCATTAAAAAGGCGATCGAATACCTCATCG
ACCAAGAATACATTAGAAGAAC