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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHB168
Library SH
(Link to library)
Clone ID SHB168
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SHB168P
(Link to Original site)
Representative DNA sequence 
>SHB168 (SHB168Q) /CSM/SH/SHB1-C/SHB168Q.Seq.d/
AAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAATAATAGA
AATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAXXXXXXXXXXAAAGT
TGATAAATCAAAGAAAAGTGCTCAACAAGTTGAAATTGCTTTAGAGAATGAAAGACTTTA
TCTTCAAGAAGTTGAAGATGCTCCAGAGAGACTATATGAAGAAATTCATAATTCCAATTT
GAATAAAGCAGTTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACC
TGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTAC
CAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGA
TATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGA
TGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGA
AGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACA
ACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAA
AGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAA
CGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATGGCT
AAAAATAATAAACAAGAGAATCAAGATGAGAATTTGTTCAAGAGAAACAACAATCTCCGA
CCAAATNAAAATCAATTAAAAAATTCAACANAACAACAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
nllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---KVDKSKKSAQQVEIALENERLYLQEVEDAPERLYEEIHNSNLNKAVQEAEEIERQQN
GNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLD
ENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQI
VEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAEWLKIINKRIKMRICSRE
TTISDQXKIN*kiqxnnk
Translated Amino Acid sequence (All Frames) 
Frame A:
kiyyqitifsflsf*slnnrnnkn*y*kkgtlkkk---

---KVDKSKKSAQQVEIALENERLYLQEVEDAPERLYEEIHNSNLNKAVQEAEEIERQQN
GNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLD
ENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQI
VEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAEWLKIINKRIKMRICSRE
TTISDQXKIN*kiqxnnk

Frame B:
kftik*lfflfflfkv*iieiikinikkker*kk---

---klinqrkvlnklkll*rmkdfifkklkmlqrdymkkfiipi*ikqfkrlkklkdnkm
vmvhll*tlirl*lkwemlkimklpmnkmplnklniynvlkmvkismsmklpnmklpf*m
kmnkmllnykmkwtn*nsylkrmkknnfqikiynnlmrmkinnnnkdnnkfkqqmlnnks
lnnlklsknfkdkinkrnkkfnkrtmlst*vmlkklnlnwmlng*k**tresr*efvqek
qqsptkxksikkfnxtt

Frame C:
nllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---s**ikekcsts*ncfre*ktlssrs*rcsreti*rns*fqfe*sssrg*rn*kttkw
*wftcckls*dcnsngkc*k**nyq*trch*tsstftty*kw*ryr*v*scpt*sclfr*
k*trcc*itk*ngpirtlt*re*rrtifk*kfttt**e*ksttttrtttsssnkc*ttnr
*tt*syqrisktrstketknstrercclle*c*ksst*igc*maknnkqenqdenlfkrn
nnlrpnxnqlknstxqq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHB168 (SHB168Q) /CSM/SH/SHB1-C/SHB168Q.Seq.d/                        938   0.0
SHA745 (SHA745Q) /CSM/SH/SHA7-B/SHA745Q.Seq.d/                        938   0.0
SHA660 (SHA660Q) /CSM/SH/SHA6-C/SHA660Q.Seq.d/                        938   0.0
SFG212 (SFG212Q) /CSM/SF/SFG2-A/SFG212Q.Seq.d/                        938   0.0
SFC806 (SFC806Q) /CSM/SF/SFC8-A/SFC806Q.Seq.d/                        938   0.0
CHR131 (CHR131Q) /CSM/CH/CHR1-B/CHR131Q.Seq.d/                        938   0.0
CHQ337 (CHQ337Q) /CSM/CH/CHQ3-B/CHQ337Q.Seq.d/                        938   0.0
CHP603 (CHP603Q) /CSM/CH/CHP6-A/CHP603Q.Seq.d/                        938   0.0
CHO814 (CHO814Q) /CSM/CH/CHO8-A/CHO814Q.Seq.d/                        938   0.0
CHO755 (CHO755Q) /CSM/CH/CHO7-C/CHO755Q.Seq.d/                        938   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   938   0.0    7
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   4e-25  1
AL301241|AL301241.1 Tetraodon nigroviridis genome survey sequence T7 end of clone 127M08 of library G from Tetraodon nigroviridis.    40   0.076  2
DT633626|DT633626.1 EST1148557 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFW90 3' end, mRNA sequence.    48   0.31   1
DT364098|DT364098.1 JGI_ANNN9278.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN9278 3', mRNA sequence.    48   0.31   1
DT347978|DT347978.1 JGI_CAAX10802.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX10802 5', mRNA sequence.    48   0.31   1
DT309975|DT309975.1 JGI_CAAX1517.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 5', mRNA sequence.    48   0.31   1
DT309974|DT309974.1 JGI_CAAX1517.rev CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 3', mRNA sequence.    48   0.31   1
DT102344|DT102344.1 JGI_ANNN5669.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN5669 3', mRNA sequence.    48   0.31   1
DR686823|DR686823.1 EST1076901 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PWABK24 3' end, mRNA sequence.    48   0.31   1
dna update 2005.12.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   290   6e-79
AM920435_502(AM920435|pid:none) Penicillium chrysogenum Wisconsi...    39   0.17
AF063866_46(AF063866|pid:none) Melanoplus sanguinipes entomopoxv...    39   0.22
AJ969441_1(AJ969441|pid:none) Trypanosoma cruzi garp gene for gl...    39   0.22
(Q54DK4) RecName: Full=Alpha-protein kinase 1;          Short=AK...    39   0.28
CR522870_613(CR522870|pid:none) Desulfotalea psychrophila LSv54 ...    39   0.28
EU579525_1(EU579525|pid:none) Plasmodium yoelii sporozoite and l...    38   0.37
AM910996_565(AM910996|pid:none) Plasmodium knowlesi strain H chr...    38   0.48
(Q55GK0) RecName: Full=GATA zinc finger domain-containing protei...    37   0.63
CP001078_829(CP001078|pid:none) Clostridium botulinum E3 str. Al...    37   0.82
protein update 2009. 4.15
PSORT 

 psg: 0.24  gvh: 0.17  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.03
 nuc: 0.04  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for SHB168 is cyt
5' end seq. ID SHB168F
5' end seq. 
>SHB168F.Seq
AAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAATAATAGA
AATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 115
3' end seq. ID SHB168Z
3' end seq. 
>SHB168Z.Seq
NNNNNNNNNNAAAGTTGATAAATCAAAGAAAAGTGCTCAACAAGTTGAAATTGCTTTAGA
GAATGAAAGACTTTATCTTCAAGAAGTTGAAGATGCTCCAGAGAGACTATATGAAGAAAT
TCATAATTCCAATTTGAATAAAGCAGTTCAAGAGGCTGAAGAAATTGAAAGACAACAAAA
TGGTAATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGA
AAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTAT
TGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGA
TGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACT
TGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGA
AAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAAT
CGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAA
AATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATT
GGATGCTGAATGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTGTTCAAGAGA
AACAACAATCTCCGACCAAATNAAAATCAATTAAAAAATTCAACANAACAACAAA
Length of 3' end seq. 775
Connected seq. ID SHB168P
Connected seq. 
>SHB168P.Seq
AAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAATAATAGA
AATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAA----------AAAGT
TGATAAATCAAAGAAAAGTGCTCAACAAGTTGAAATTGCTTTAGAGAATGAAAGACTTTA
TCTTCAAGAAGTTGAAGATGCTCCAGAGAGACTATATGAAGAAATTCATAATTCCAATTT
GAATAAAGCAGTTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACC
TGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTAC
CAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGA
TATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGA
TGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGA
AGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACA
ACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAA
AGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAA
CGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATGGCT
AAAAATAATAAACAAGAGAATCAAGATGAGAATTTGTTCAAGAGAAACAACAATCTCCGA
CCAAATNAAAATCAATTAAAAAATTCAACANAACAACAAA
Length of connected seq. 870
Full length Seq ID -
Full length Seq. -
Length of full length seq. -