SHB156
Library SH
(Link to library)
Clone ID SHB156
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11241-1
Original site URL
Representative seq. ID SHB156P
(Link to Original site)
Representative DNA sequence
>SHB156 (SHB156Q) /CSM/SH/SHB1-C/SHB156Q.Seq.d/
ATTCAAGTCCAGCTNCAACCAAATTTAAATTCNCAGTATAATTTATGGGATGGATTTGAT
TTATTAGTTAAAANAACTGATAATGATTTAATNCAATCAAAAAATNTNTTAAACTTTTTT
AAAAANAAAGCNGAATTAGAAAAACANCNTTCAAAGAAXXXXXXXXXXATAAAAACAAGT
AGTCCAGNCAGAACAACNCCACTTACATCATCACCNCCNTTAGCATCNACTNAATCNACA
GATGAACTAATGAAAAAATTGGNCCNATTTACCCAAGNAACAACNCCNTCAATAAGAATA
GCAACAACAACAACNCCAACAACAATAACAACNCCAACAACAACAGNGNCAACCNCAACA
ATNACAACAGNCAAAACNACNCCNAGTTACATCATCNCCNCCNACAGCATTTAACATATC
AAGTGAAGATTTAATGAAAAAGTTGGNCCAATTTATTAATTTTTAGAAGATAATGTATAT
TTTATAGCTATAGAGNTTCNTTTTAAACAAAACAAAACAAAACAAAAATAGTTTTTTTT
sequence update 2002.10.25
Translated Amino Acid sequence
IQVQLQPNLNSQYNLWDGFDLLVKXTDNDLXQSKNXLNFFKXKAELEKXXSK---

---IKTSSPXRTTPLTSSPPLASTXSTDELMKKLXXFTQXTTPSIRIATTTTPTTITTPT
TTXXTXTXTTXKTTPSYIIXXXSI*hik*rfnekvgpiy*flednvyfiaiexxfkqnkt
kqk*ff


Translated Amino Acid sequence (All Frames)
Frame A:
IQVQLQPNLNSQYNLWDGFDLLVKXTDNDLXQSKNXLNFFKXKAELEKXXSK---

---IKTSSPXRTTPLTSSPPLASTXSTDELMKKLXXFTQXTTPSIRIATTTTPTTITTPT
TTXXTXTXTTXKTTPSYIIXXXSI*hik*rfnekvgpiy*flednvyfiaiexxfkqnkt
kqk*ff

Frame B:
fkssxnqi*ixsiiygmdliy*lkxlimi*xnqkxx*tflkxkxn*knxxqr---

---*kqvvqxeqxhlhhhxx*hxlnxqmn**knwxxlpkxqxxq*e*qqqqxqqq*qxqq
qqxqpqqxqqxkxxxvtsspptafnissedlmkklxqfinf*kimyil*l*xfxlnktkq
nknsff

Frame C:
sspaxtkfkfxv*fmgwi*fis*xn***fnxikkxxklf*kxsxirktxfke---

---knk*sxqnnxtyiitxxsixxixr*tnekigpiypxnnxxnknsnnnnxnnnnnxnn
nxxnxnnxnxqnxxxlhhxxxqhltyqvki**kswxnllifrr*cifysyrxsf*tkqnk
tkivff

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHB156 (SHB156Q) /CSM/SH/SHB1-C/SHB156Q.Seq.d/ 406 e-112
AHC605 (AHC605Q) /CSM/AH/AHC6-A/AHC605Q.Seq.d/ 230 2e-59
VHE433 (VHE433Q) /CSM/VH/VHE4-B/VHE433Q.Seq.d/ 192 4e-48
SLH119 (SLH119Q) /CSM/SL/SLH1-A/SLH119Q.Seq.d/ 192 4e-48
CHK709 (CHK709Q) /CSM/CH/CHK7-A/CHK709Q.Seq.d/ 192 4e-48
SHE382 (SHE382Q) /CSM/SH/SHE3-D/SHE382Q.Seq.d/ 188 6e-47
AHN116 (AHN116Q) /CSM/AH/AHN1-A/AHN116Q.Seq.d/ 186 2e-46
SHF845 (SHF845Q) /CSM/SH/SHF8-B/SHF845Q.Seq.d/ 184 9e-46
SHB194 (SHB194Q) /CSM/SH/SHB1-D/SHB194Q.Seq.d/ 184 9e-46
AHL755 (AHL755Q) /CSM/AH/AHL7-C/AHL755Q.Seq.d/ 184 9e-46

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC158140|AC158140.9 Mus musculus chromosome 8, clone RP24-267F22, complete sequence. 44 2.9 1
AC105685|AC105685.3 Rattus norvegicus clone CH230-267B19, *** SEQUENCING IN PROGRESS ***, 19 unordered pieces. 30 4.9 2
AC114049|AC114049.4 Rattus norvegicus clone CH230-188H5, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 30 5.1 2
CZ529284|CZ529284.1 SRAA-aac60d03.b1 Strongyloides ratti whole genome shotgun library (SRAAGSS 004) Strongyloides ratti genomic, genomic survey sequence. 32 7.1 2
CZ536286|CZ536286.1 SRAA-aad02d06.g1 Strongyloides ratti whole genome shotgun library (SRAAGSS 004) Strongyloides ratti genomic, genomic survey sequence. 32 7.2 2

dna update 2005.12.19
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AE016815_293(AE016815|pid:none) Ashbya gossypii (= Eremothecium ... 33 3.4

protein update 2008.11.12
PSORT

psg: 0.69 gvh: 0.42 alm: 0.58 top: 0.53 tms: 0.00 mit: 0.25 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: cytoplasmic
32.0 %: mitochondrial
24.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for SHB156 is cyt

5' end seq. ID SHB156F
5' end seq.
>SHB156F.Seq
ATTCAAGTCCAGCTNCAACCAAATTTAAATTCNCAGTATAATTTATGGGATGGATTTGAT
TTATTAGTTAAAANAACTGATAATGATTTAATNCAATCAAAAAATNTNTTAAACTTTTTT
AAAAANAAAGCNGAATTAGAAAAACANCNTTCAAAGAANNNNNNNNNN
Length of 5' end seq. 168
3' end seq. ID SHB156Z
3' end seq.
>SHB156Z.Seq
NNNNNNNNNNATAAAAACAAGTAGTCCAGNCAGAACAACNCCACTTACATCATCACCNCC
NTTAGCATCNACTNAATCNACAGATGAACTAATGAAAAAATTGGNCCNATTTACCCAAGN
AACAACNCCNTCAATAAGAATAGCAACAACAACAACNCCAACAACAATAACAACNCCAAC
AACAACAGNGNCAACCNCAACAATNACAACAGNCAAAACNACNCCNAGTTACATCATCNC
CNCCNACAGCATTTAACATATCAAGTGAAGATTTAATGAAAAAGTTGGNCCAATTTATTA
ATTTTTAGAAGATAATGTATATTTTATAGCTATAGAGNTTCNTTTTAAACAAAACAAAAC
AAAACAAAAATAGTTTTTTTT
Length of 3' end seq. 381
Connected seq. ID SHB156P
Connected seq.
>SHB156P.Seq
ATTCAAGTCCAGCTNCAACCAAATTTAAATTCNCAGTATAATTTATGGGATGGATTTGAT
TTATTAGTTAAAANAACTGATAATGATTTAATNCAATCAAAAAATNTNTTAAACTTTTTT
AAAAANAAAGCNGAATTAGAAAAACANCNTTCAAAGAA----------ATAAAAACAAGT
AGTCCAGNCAGAACAACNCCACTTACATCATCACCNCCNTTAGCATCNACTNAATCNACA
GATGAACTAATGAAAAAATTGGNCCNATTTACCCAAGNAACAACNCCNTCAATAAGAATA
GCAACAACAACAACNCCAACAACAATAACAACNCCAACAACAACAGNGNCAACCNCAACA
ATNACAACAGNCAAAACNACNCCNAGTTACATCATCNCCNCCNACAGCATTTAACATATC
AAGTGAAGATTTAATGAAAAAGTTGGNCCAATTTATTAATTTTTAGAAGATAATGTATAT
TTTATAGCTATAGAGNTTCNTTTTAAACAAAACAAAACAAAACAAAAATAGTTTTTTTT
Length of connected seq. 529
Full length Seq ID -
Full length Seq. -
Length of full length seq. -