SHB155
Library SH
(Link to library)
Clone ID SHB155
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SHB155P
(Link to Original site)
Representative DNA sequence
>SHB155 (SHB155Q) /CSM/SH/SHB1-C/SHB155Q.Seq.d/
TGTTGGCCTACTGGATTTTATTTGTATATAAATAATTGTTTTTCGTTTTTTATTTTATAT
AAAGTATTAATTTATAATTTTTACATCCTTTTTGTTTTTTGTTTGTTTGTTTGTTTAAAA
TAGGATTATAAATTATATTAATAGGCTATAAAATAAAATGCCTGAAGAACAACCACAACA
ACAACAACAACCAGTTCGTGAACAACCATCGAACCCAGATGATGTACCATGGAAAAAAGT
ATGGACAATCAATGAAATGAGAGATTCTGCAAAGGATTGGAATTTATCATCAGATGCAGG
TCTTTTAAATTATATGCAAGATTTTGCAAATAAACTTATCTATAAAACTAAAGAATTAGA
ATTTCAAGTTGATGAATTAGTTAAAGATTCAAAATCAATTCATGTTAAAGTTCATAATAC
ATTTGATCAATTTTTAATGTTATCAAATACTCAATTCATTGAAAATAGAGTTTATGAAGA
TAATTCAGAATTAAATAATGAGCAAAATGAACAAACAGATAAAXXXXXXXXXXAANTGAT
TTATCAGATTCTGGTAGATCATCACCATCTGTCACTTCTCCAACCCTATNTGGTGGTAGA
CCACGTAGAAATACAGTTTCGTCTCGTAATAATAATGACTCTGAAGAAAGTGAACCAGTT
AAAGAATTGACTCATGCAACTGCAAAGTAGACCAAAATCTGGTGGTCGTAGACCTCCAAC
TCGTAAATCGTGGTACTTCTGCTCCAAATAGATCAGAATCTCCAACTCCAACTCAAAAAT
CCGATTCAGAATCTGAAAAAGTCAGATCCTCTTCACCAATTACAACCAAACCAGTTGTTT
CTGAACCAACAAAGAAGACTATTTCAAATACATCATTCTTTGATGATATTCCATCAGAAA
AAACTTCTAGTGGTAAATCTTCACCATCTCCAACTATTAAATCAACATCAGAAAAAGTTA
CAATTGACCCATTAGGTGATATCTTTGCATCTACTACTACTAAACCAACTGCTTCTNAAA
CCAAAGCTGCTCTTTCCTCTGCTCCTAAAAAATCNAACCAGAAACACCAAAAGAAACACC
AAAAGAAAC
sequence update 2002.10.25
Translated Amino Acid sequence
vglldfici*iivfrflfyiky*fiiftsflffvclfv*nriinyinrl*NKMPEEQPQQ
QQQPVREQPSNPDDVPWKKVWTINEMRDSAKDWNLSSDAGLLNYMQDFANKLIYKTKELE
FQVDELVKDSKSIHVKVHNTFDQFLMLSNTQFIENRVYEDNSELNNEQNEQTDK---

---XDLSDSGRSSPSVTSPTLXGGRPRRNTVSSRNNNDSEESEPVKELTHATAK*tkiww
s*tsns*ivvlllqidqnlqlqlknpiqnlkksdplhqlqpnqlflnqqrrlfqihhslm
ifhqkkllvvnlhhlqllnqhqkklqlth*vislhllllnqlllkpkllfplllknxtrn
tkrntkrn


Translated Amino Acid sequence (All Frames)
Frame A:
cwptgfylyinncfsffilykvliynfyilfvfclfvclk*dykly**aik*na*rtttt
ttttss*ttiepr*ctmeksmdnq*nerfckglefiircrsfklyarfck*tyl*n*rir
iss**is*rfkinsc*ss*yi*sifnvikysih*k*sl*r*frik**ak*tnr*---

---x*firfw*iitichfsnpxww*tt*kysfvs****l*rk*ts*ridscnckvdqnlv
vvdlqlvnrgtsapnrsesptptqksdsesekvrssspittkpvvseptkktisntsffd
dipsektssgksspsptikstsekvtidplgdifastttkptasxtkaalssapkksnqk
hqkkhqkk

Frame B:
vglldfici*iivfrflfyiky*fiiftsflffvclfv*nriinyinrl*NKMPEEQPQQ
QQQPVREQPSNPDDVPWKKVWTINEMRDSAKDWNLSSDAGLLNYMQDFANKLIYKTKELE
FQVDELVKDSKSIHVKVHNTFDQFLMLSNTQFIENRVYEDNSELNNEQNEQTDK---

---XDLSDSGRSSPSVTSPTLXGGRPRRNTVSSRNNNDSEESEPVKELTHATAK*tkiww
s*tsns*ivvlllqidqnlqlqlknpiqnlkksdplhqlqpnqlflnqqrrlfqihhslm
ifhqkkllvvnlhhlqllnqhqkklqlth*vislhllllnqlllkpkllfplllknxtrn
tkrntkrn

Frame C:
laywilfvyk*lffvfyfi*sinl*flhpfcflfvclfkigl*iiligykikclknnhnn
nnnqfvnnhrtqmmyhgkkygqsmk*eilqrigiyhqmqvf*iickilqinlsiklkn*n
fklmn*lkiqnqfmlkfiihlinf*cyqilnslkiefmkiiqn*imskmnkqi---

---xiyqilvdhhhlsllqpyxvvdhveiqfrlviimtlkkvnqlkn*lmqlqsrpksgg
rrpptrkswyfcsk*irisnsnskirfri*ksqilftnynqtscf*tnkedyfkyiil**
ysirknf*w*iftisny*inirksyn*pir*ylciyyy*tncfxnqscsflcs*kixpet
pketpke

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHB155 (SHB155Q) /CSM/SH/SHB1-C/SHB155Q.Seq.d/ 1697 0.0
SHG396 (SHG396Q) /CSM/SH/SHG3-D/SHG396Q.Seq.d/ 1047 0.0
CHI188 (CHI188Q) /CSM/CH/CHI1-D/CHI188Q.Seq.d/ 1047 0.0
VFK709 (VFK709Q) /CSM/VF/VFK7-A/VFK709Q.Seq.d/ 1043 0.0
AHL489 (AHL489Q) /CSM/AH/AHL4-D/AHL489Q.Seq.d/ 1039 0.0
VHO702 (VHO702Q) /CSM/VH/VHO7-A/VHO702Q.Seq.d/ 985 0.0
VHB508 (VHB508Q) /CSM/VH/VHB5-A/VHB508Q.Seq.d/ 658 0.0
SHL870 (SHL870Q) /CSM/SH/SHL8-C/SHL870Q.Seq.d/ 658 0.0
SHI121 (SHI121Q) /CSM/SH/SHI1-A/SHI121Q.Seq.d/ 658 0.0
SHE188 (SHE188Q) /CSM/SH/SHE1-D/SHE188Q.Seq.d/ 658 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 636 0.0 9
AY047364|AY047364.1 Dictyostelium discoideum cAMP phosphodiesterase (PdeE) gene, complete cds. 218 2e-79 3
DT615586| unnamed protein product [Mus musculus], mRNA sequence. 54 0.006 1
DT607553| unnamed protein product [Mus musculus], mRNA sequence. 54 0.006 1
DN816312| unnamed protein product [Mus musculus], mRNA sequence. 54 0.006 1
CX833099| KIAA0592 protein [Homo sapiens], mRNA sequence. 54 0.006 1
CJ489042|CJ489042.1 Macaca fascicularis mRNA, clone: QtsA-16775, 5' end, expressed in testis. 50 0.098 1
CJ489015|CJ489015.1 Macaca fascicularis mRNA, clone: QtsA-16748, 5' end, expressed in testis. 50 0.098 1
CJ489014|CJ489014.1 Macaca fascicularis mRNA, clone: QtsA-16747, 5' end, expressed in testis. 50 0.098 1
CJ489006|CJ489006.1 Macaca fascicularis mRNA, clone: QtsA-16739, 5' end, expressed in testis. 50 0.098 1
dna update 2005.12.19
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116979_72(AC116979|pid:none) Dictyostelium discoideum chromoso... 219 2e-55
(Q80X08) RecName: Full=Protein FAM21; &AY257251_1(AY257251|pid:... 104 4e-21
(Q91Y25) Protein FAM21. &AF371373_1(AF371373|pid:none) 104 4e-21
AK163765_1(AK163765|pid:none) Mus musculus 16 days embryo head c... 104 4e-21
CU012047_3(CU012047|pid:none) Zebrafish DNA sequence from clone ... 102 2e-20
CU012047_2(CU012047|pid:none) Zebrafish DNA sequence from clone ... 102 2e-20
(Q9Y4E1) RecName: Full=Protein FAM21C; 101 5e-20
(Q641Q2) RecName: Full=Protein FAM21A; &AL442003_4(AL442003|pid... 101 5e-20
AK303048_1(AK303048|pid:none) Homo sapiens cDNA FLJ61504 complet... 101 5e-20
BC150611_1(BC150611|pid:none) Homo sapiens cDNA clone MGC:183521... 101 5e-20
protein update 2009. 4.15
PSORT

psg: 0.75 gvh: 0.17 alm: 0.56 top: 0.53 tms: 0.00 mit: 0.25 mip: 0.00
nuc: 0.03 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
24.0 %: cytoplasmic
12.0 %: cytoskeletal
12.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: Golgi

>> prediction for SHB155 is nuc

5' end seq. ID SHB155F
5' end seq.
>SHB155F.Seq
TGTTGGCCTACTGGATTTTATTTGTATATAAATAATTGTTTTTCGTTTTTTATTTTATAT
AAAGTATTAATTTATAATTTTTACATCCTTTTTGTTTTTTGTTTGTTTGTTTGTTTAAAA
TAGGATTATAAATTATATTAATAGGCTATAAAATAAAATGCCTGAAGAACAACCACAACA
ACAACAACAACCAGTTCGTGAACAACCATCGAACCCAGATGATGTACCATGGAAAAAAGT
ATGGACAATCAATGAAATGAGAGATTCTGCAAAGGATTGGAATTTATCATCAGATGCAGG
TCTTTTAAATTATATGCAAGATTTTGCAAATAAACTTATCTATAAAACTAAAGAATTAGA
ATTTCAAGTTGATGAATTAGTTAAAGATTCAAAATCAATTCATGTTAAAGTTCATAATAC
ATTTGATCAATTTTTAATGTTATCAAATACTCAATTCATTGAAAATAGAGTTTATGAAGA
TAATTCAGAATTAAATAATGAGCAAAATGAACAAACAGATAAANNNNNNNNNN
Length of 5' end seq. 533
3' end seq. ID SHB155Z
3' end seq.
>SHB155Z.Seq
NNNNNNNNNNAANTGATTTATCAGATTCTGGTAGATCATCACCATCTGTCACTTCTCCAA
CCCTATNTGGTGGTAGACCACGTAGAAATACAGTTTCGTCTCGTAATAATAATGACTCTG
AAGAAAGTGAACCAGTTAAAGAATTGACTCATGCAACTGCAAAGTAGACCAAAATCTGGT
GGTCGTAGACCTCCAACTCGTAAATCGTGGTACTTCTGCTCCAAATAGATCAGAATCTCC
AACTCCAACTCAAAAATCCGATTCAGAATCTGAAAAAGTCAGATCCTCTTCACCAATTAC
AACCAAACCAGTTGTTTCTGAACCAACAAAGAAGACTATTTCAAATACATCATTCTTTGA
TGATATTCCATCAGAAAAAACTTCTAGTGGTAAATCTTCACCATCTCCAACTATTAAATC
AACATCAGAAAAAGTTACAATTGACCCATTAGGTGATATCTTTGCATCTACTACTACTAA
ACCAACTGCTTCTNAAACCAAAGCTGCTCTTTCCTCTGCTCCTAAAAAATCNAACCAGAA
ACACCAAAAGAAACACCAAAAGAAAC
Length of 3' end seq. 566
Connected seq. ID SHB155P
Connected seq.
>SHB155P.Seq
TGTTGGCCTACTGGATTTTATTTGTATATAAATAATTGTTTTTCGTTTTTTATTTTATAT
AAAGTATTAATTTATAATTTTTACATCCTTTTTGTTTTTTGTTTGTTTGTTTGTTTAAAA
TAGGATTATAAATTATATTAATAGGCTATAAAATAAAATGCCTGAAGAACAACCACAACA
ACAACAACAACCAGTTCGTGAACAACCATCGAACCCAGATGATGTACCATGGAAAAAAGT
ATGGACAATCAATGAAATGAGAGATTCTGCAAAGGATTGGAATTTATCATCAGATGCAGG
TCTTTTAAATTATATGCAAGATTTTGCAAATAAACTTATCTATAAAACTAAAGAATTAGA
ATTTCAAGTTGATGAATTAGTTAAAGATTCAAAATCAATTCATGTTAAAGTTCATAATAC
ATTTGATCAATTTTTAATGTTATCAAATACTCAATTCATTGAAAATAGAGTTTATGAAGA
TAATTCAGAATTAAATAATGAGCAAAATGAACAAACAGATAAA----------AANTGAT
TTATCAGATTCTGGTAGATCATCACCATCTGTCACTTCTCCAACCCTATNTGGTGGTAGA
CCACGTAGAAATACAGTTTCGTCTCGTAATAATAATGACTCTGAAGAAAGTGAACCAGTT
AAAGAATTGACTCATGCAACTGCAAAGTAGACCAAAATCTGGTGGTCGTAGACCTCCAAC
TCGTAAATCGTGGTACTTCTGCTCCAAATAGATCAGAATCTCCAACTCCAACTCAAAAAT
CCGATTCAGAATCTGAAAAAGTCAGATCCTCTTCACCAATTACAACCAAACCAGTTGTTT
CTGAACCAACAAAGAAGACTATTTCAAATACATCATTCTTTGATGATATTCCATCAGAAA
AAACTTCTAGTGGTAAATCTTCACCATCTCCAACTATTAAATCAACATCAGAAAAAGTTA
CAATTGACCCATTAGGTGATATCTTTGCATCTACTACTACTAAACCAACTGCTTCTNAAA
CCAAAGCTGCTCTTTCCTCTGCTCCTAAAAAATCNAACCAGAAACACCAAAAGAAACACC
AAAAGAAAC
Length of connected seq. 1079
Full length Seq ID -
Full length Seq. -
Length of full length seq. -