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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHB149
Library SH
(Link to library)
Clone ID SHB149
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SHB149 (SHB149Q) /CSM/SH/SHB1-C/SHB149Q.Seq.d/
ACTGTTGGCCTACTGGNAAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTT
CTTTTTAAAGTTTAAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAA
AAAAAAAAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
LLAYWXIINLLSNNYFFFSFFLKFK**k**klilkkrnvkkk---
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllxnnkftik*lfflfflfkv*iieiikinikkker*kk---


Frame B:
LLAYWXIINLLSNNYFFFSFFLKFK**k**klilkkrnvkkk---


Frame C:
cwptgk**iyyqitifsflsf*slnnrnnkn*y*kkgtlkk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHK347 (SHK347Q) /CSM/SH/SHK3-B/SHK347Q.Seq.d/                         84   6e-16
SHK184 (SHK184Q) /CSM/SH/SHK1-D/SHK184Q.Seq.d/                         84   6e-16
SHJ885 (SHJ885Q) /CSM/SH/SHJ8-D/SHJ885Q.Seq.d/                         84   6e-16
SHJ669 (SHJ669Q) /CSM/SH/SHJ6-C/SHJ669Q.Seq.d/                         84   6e-16
SHE774 (SHE774Q) /CSM/SH/SHE7-D/SHE774Q.Seq.d/                         84   6e-16
SHE654 (SHE654Q) /CSM/SH/SHE6-C/SHE654Q.Seq.d/                         84   6e-16
SHB725 (SHB725Q) /CSM/SH/SHB7-B/SHB725Q.Seq.d/                         84   6e-16
SHB708 (SHB708Q) /CSM/SH/SHB7-A/SHB708Q.Seq.d/                         84   6e-16
SHB569 (SHB569Q) /CSM/SH/SHB5-C/SHB569Q.Seq.d/                         84   6e-16
SHB395 (SHB395Q) /CSM/SH/SHB3-D/SHB395Q.Seq.d/                         84   6e-16
own update 2002.10.14
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.    56   2e-04  1
CJ442013|CJ442013.1 Macaca fascicularis mRNA, clone: QccE-19510, 5' end, expressed in cerebellum cortex.    46   0.17   1
CJ464925|CJ464925.1 Macaca fascicularis mRNA, clone: QnpA-13835, 5' end, expressed in brain parietal lobe.    44   0.66   1
CJ492856|CJ492856.1 Macaca fascicularis mRNA, clone: QtsA-20852, 5' end, expressed in testis.    44   0.66   1
CJ492929|CJ492929.1 Macaca fascicularis mRNA, clone: QtsA-20942, 5' end, expressed in testis.    36   1.1    2
CJ478682|CJ478682.1 Macaca fascicularis mRNA, clone: QtrA-13838, 5' end, expressed in brain temporal lobe.    42   2.6    1
CJ477242|CJ477242.1 Macaca fascicularis mRNA, clone: QtrA-12039, 5' end, expressed in brain temporal lobe.    42   2.6    1
CJ474336|CJ474336.1 Macaca fascicularis mRNA, clone: QorA-14429, 5' end, expressed in brain occipital lobe.    42   2.6    1
CJ473941|CJ473941.1 Macaca fascicularis mRNA, clone: QorA-14003, 5' end, expressed in brain occipital lobe.    42   2.6    1
CJ462841|CJ462841.1 Macaca fascicularis mRNA, clone: QnpA-10566, 5' end, expressed in brain parietal lobe.    42   2.6    1
dna update 2005.12.19
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 60,899,778
protein update 2009. 4.15
PSORT 

 psg: 0.97  gvh: 0.26  alm: 0.41  top: 0.60  tms: 0.00  mit: 0.35  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 24.0 %: mitochondrial
	 20.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SHB149 is nuc
5' end seq. ID SHB149F
5' end seq. 
>SHB149F.Seq
ACTGTTGGCCTACTGGNAAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTT
CTTTTTAAAGTTTAAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAA
AAAAAAAANNNNNNNNNN
Length of 5' end seq. 138
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -