SHB142
Library SH
(Link to library)
Clone ID SHB142
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16411-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SHB142 (SHB142Q) /CSM/SH/SHB1-B/SHB142Q.Seq.d/
XXXXXXXXXXGTTTAATTGGTGCTCCACCAGGTTATGTAGGTTATGATCAAGGTGGTCAA
TTAACTGAAGCCGTCAGAAGAAGACCATACAGTGTAGTATTGTTTGATGAAGTTGAAAAA
GCTCATCAACAAGTTTGGAATGTTCTCTTACAAGTATTGGATGAAGGTCGTCTTACCGAT
GGTCAAGGTAGAACCGTAGATTTCTCAAATGTTGTTATCATTATGACCTCAAATTTAGGT
AGTCAATACATCCTTGGTGAACAAGCAAACAAAGAAGGTGGTAACAACTCTTTATCACAA
GCTTGTAAAGATAAAGTCATTGATGAAGTTAGAAAACATTTCCGTCCAGAGTTTTTAAAT
CGTCTCGATGATATAATTGTCTTTACTCCATTGAGTAAAGAAAACCTTCATAGTATTATT
ACTCTTCAATTAAGATCCGTCGAAAAGAGATTAGAAGATCAAAATATGTCTTTAAAGATT
TCAAACGATGCTTTAGATTCAATTATCAATGCTGCATATGATCCAATCTTTGGTGGTAGA
CCATTGAAACGTTACATTGAAAAGAATATTGTCACTGAACTTAGTAAACTCATCCTTGGT
GGTAAATTAAAAGAAAATCAAGGTGTTGTTGTCAATGAAAAAGATCATCATCTCAACTTT
GATATTATAA
sequence update 2002. 9.10
Translated Amino Acid sequence
---LIGAPPGYVGYDQGGQLTEAVRRRPYSVVLFDEVEKAHQQVWNVLLQVLDEGRLTDG
QGRTVDFSNVVIIMTSNLGSQYILGEQANKEGGNNSLSQACKDKVIDEVRKHFRPEFLNR
LDDIIVFTPLSKENLHSIITLQLRSVEKRLEDQNMSLKISNDALDSIINAAYDPIFGGRP
LKRYIEKNIVTELSKLILGGKLKENQGVVVNEKDHHLNFDII


Translated Amino Acid sequence (All Frames)
Frame A:
---fnwcstrlcrl*srwsin*srqkktiqcsiv**s*kssstslecsltsig*rssyrw
sr*nrrflkccyhydlkfr*sihpw*tskqrrw*qlfitsl*r*sh**s*ktfpsrvfks
sr*ynclysie*rkps*yyyssikirrkeirrskyvfkdfkrcfrfnyqcci*snlww*t
ietlh*keych*t**thpww*ikrksrcccq*krsssql*yy


Frame B:
---LIGAPPGYVGYDQGGQLTEAVRRRPYSVVLFDEVEKAHQQVWNVLLQVLDEGRLTDG
QGRTVDFSNVVIIMTSNLGSQYILGEQANKEGGNNSLSQACKDKVIDEVRKHFRPEFLNR
LDDIIVFTPLSKENLHSIITLQLRSVEKRLEDQNMSLKISNDALDSIINAAYDPIFGGRP
LKRYIEKNIVTELSKLILGGKLKENQGVVVNEKDHHLNFDII


Frame C:
---*lvlhqvm*vmikvvn*lkpseedhtv*yclmklkklinkfgmfsykywmkvvlpmv
kvep*isqmllsl*pqi*vvntslvnkqtkkvvttlyhklvkikslmklenisvqsf*iv
smi*lsllh*vkktfivlllfn*dpskrd*kikicl*rfqtml*iqlsmlhmiqslvvdh
*nvtlkrilslnlvnsslvvn*kkikvllsmkkiiistlil*


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHB142 (SHB142Q) /CSM/SH/SHB1-B/SHB142Q.Seq.d/ 1308 0.0
VHK241 (VHK241Q) /CSM/VH/VHK2-B/VHK241Q.Seq.d/ 1306 0.0
VHI333 (VHI333Q) /CSM/VH/VHI3-B/VHI333Q.Seq.d/ 1306 0.0
SHL818 (SHL818Q) /CSM/SH/SHL8-A/SHL818Q.Seq.d/ 1306 0.0
SHL678 (SHL678Q) /CSM/SH/SHL6-D/SHL678Q.Seq.d/ 1306 0.0
SHL672 (SHL672Q) /CSM/SH/SHL6-C/SHL672Q.Seq.d/ 1306 0.0
SHL540 (SHL540Q) /CSM/SH/SHL5-B/SHL540Q.Seq.d/ 1306 0.0
SHL520 (SHL520Q) /CSM/SH/SHL5-A/SHL520Q.Seq.d/ 1306 0.0
SHK749 (SHK749Q) /CSM/SH/SHK7-C/SHK749Q.Seq.d/ 1306 0.0
SHK741 (SHK741Q) /CSM/SH/SHK7-B/SHK741Q.Seq.d/ 1306 0.0

own update 2002.10.14
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CP000029|CP000029.1 Staphylococcus epidermidis RP62A, complete genome. 82 2e-20 3
AE016746|AE016746.1 Staphylococcus epidermidis ATCC 12228, section 3 of 9 of the complete genome. 82 2e-20 3
AX145048|AX145048.1 Sequence 3770 from Patent WO0134809. 82 2e-20 3
AR485684|AR485684.1 Sequence 3770 from patent US 6703492. 82 2e-20 3
AF269730|AF269730.1 Staphylococcus epidermidis strain SR1 clone step.1020d12 genomic sequence. 82 2e-20 3
AX143829|AX143829.1 Sequence 2551 from Patent WO0134809. 82 2e-20 3
AR484857|AR484857.1 Sequence 2551 from patent US 6703492. 82 2e-20 3
AL399818|AL399818.1 T7 end of clone AS0AA017F07 of library AS0AA from strain CLIB 533 of Saccharomyces bayanus. 58 8e-15 4
CP000033|CP000033.1 Lactobacillus acidophilus NCFM, complete genome. 60 4e-14 3
BQ862449|BQ862449.1 QGC21B24.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC21B24, mRNA sequence. 80 3e-13 2
dna update 2005.12.19
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY764155_1(AY764155|pid:none) Vitis vinifera heat shock protein ... 249 7e-65
AJ970534_1(AJ970534|pid:none) Triticum turgidum subsp. durum par... 248 1e-64
AJ970533_1(AJ970533|pid:none) Triticum turgidum subsp. durum par... 247 2e-64
CP000806_1939(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 247 2e-64
(Q6F2Y7) RecName: Full=Heat shock protein 101; &AC130611_3(AC13... 247 2e-64
AF097363_1(AF097363|pid:none) Triticum aestivum heat shock prote... 247 2e-64
CP000806_3217(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 246 3e-64
AJ970535_1(AJ970535|pid:none) Triticum turgidum subsp. durum par... 246 4e-64
L35272_1(L35272|pid:none) Glycine max heat shock protein (SB100)... 246 6e-64
AF083327_1(AF083327|pid:none) Zea mays 101 kDa heat shock protei... 245 7e-64
protein update 2009. 5.28
PSORT

psg: 0.84 gvh: 0.45 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.05 mip: 0.04
nuc: 0.03 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
24.0 %: nuclear
8.0 %: vesicles of secretory system
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: vacuolar

>> prediction for SHB142 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SHB142Z
3' end seq.
>SHB142Z.Seq
NNNNNNNNNNGTTTAATTGGTGCTCCACCAGGTTATGTAGGTTATGATCAAGGTGGTCAA
TTAACTGAAGCCGTCAGAAGAAGACCATACAGTGTAGTATTGTTTGATGAAGTTGAAAAA
GCTCATCAACAAGTTTGGAATGTTCTCTTACAAGTATTGGATGAAGGTCGTCTTACCGAT
GGTCAAGGTAGAACCGTAGATTTCTCAAATGTTGTTATCATTATGACCTCAAATTTAGGT
AGTCAATACATCCTTGGTGAACAAGCAAACAAAGAAGGTGGTAACAACTCTTTATCACAA
GCTTGTAAAGATAAAGTCATTGATGAAGTTAGAAAACATTTCCGTCCAGAGTTTTTAAAT
CGTCTCGATGATATAATTGTCTTTACTCCATTGAGTAAAGAAAACCTTCATAGTATTATT
ACTCTTCAATTAAGATCCGTCGAAAAGAGATTAGAAGATCAAAATATGTCTTTAAAGATT
TCAAACGATGCTTTAGATTCAATTATCAATGCTGCATATGATCCAATCTTTGGTGGTAGA
CCATTGAAACGTTACATTGAAAAGAATATTGTCACTGAACTTAGTAAACTCATCCTTGGT
GGTAAATTAAAAGAAAATCAAGGTGTTGTTGTCAATGAAAAAGATCATCATCTCAACTTT
GATATTATAA
Length of 3' end seq. 670
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -