>SHB140 (SHB140Q) /CSM/SH/SHB1-B/SHB140Q.Seq.d/
XXXXXXXXXXCCAGAGAGACTATATGAAGAAATTCATAATTNCCAATTTGAATAAAGCAG
TTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACT
CTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAG
ATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGT
ATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAAT
TACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTT
CAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAAC
AACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAG
AATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCT
ACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATA
AACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTA
AAAATCAATTAAAAAATATTCAACATNAACAACAAATCCAAGAACAACAAGATAAATTAA
ATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAANATTNATCATTCT
TTCTTTTNAAAAA

---QRDYMKKFIIXNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQD
AIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFS
NKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVY
LSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHXQQIQEQQDKLN
QEKNQQLLEQEQNQKXXSFFLXK

Frame A:
---QRDYMKKFIIXNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQD
AIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFS
NKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVY
LSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHXQQIQEQQDKLN
QEKNQQLLEQEQNQKXXSFFLXK


Frame B:
---reti*rns*xpi*ikqfkrlkklkdnkmvmvhll*tlirl*lkwemlkimklpmnkm
plnklniynvlkmvkismsmklpnmklpf*mkmnkmllnykmkwtn*nsylkrmkknnfq
ikiynnlmrmkinnnnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfnkrtmlst
*vmlkklnlnwmlnwlkiinkrikmri*fkrnnnlltklkin*kifnxnnksknnkin*i
kkkinny*nknkikxixhsffxk


Frame C:
---erlyeeihnxqfe*sssrg*rn*kttkw*wftcckls*dcnsngkc*k**nyq*trc
h*tsstftty*kw*ryr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*re*rrtifk
*kfttt**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknstrerccll
e*c*ksst*igc*ig*k**tresr*efssrettis*pn*ksikkystxttnprttr*iks
rkkstiirtrtkskxxiilsfxk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHK152 (SHK152Q) /CSM/SH/SHK1-C/SHK152Q.Seq.d/                        761   0.0
SHJ637 (SHJ637Q) /CSM/SH/SHJ6-B/SHJ637Q.Seq.d/                        761   0.0
SHG652 (SHG652Q) /CSM/SH/SHG6-C/SHG652Q.Seq.d/                        761   0.0
SHD214 (SHD214Q) /CSM/SH/SHD2-A/SHD214Q.Seq.d/                        761   0.0
SHD213 (SHD213Q) /CSM/SH/SHD2-A/SHD213Q.Seq.d/                        761   0.0
SHB167 (SHB167Q) /CSM/SH/SHB1-C/SHB167Q.Seq.d/                        761   0.0
SHB140 (SHB140Q) /CSM/SH/SHB1-B/SHB140Q.Seq.d/                        761   0.0
SHA484 (SHA484Q) /CSM/SH/SHA4-D/SHA484Q.Seq.d/                        761   0.0
SHA293 (SHA293Q) /CSM/SH/SHA2-D/SHA293Q.Seq.d/                        761   0.0
CHS310 (CHS310Q) /CSM/CH/CHS3-A/CHS310Q.Seq.d/                        761   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   704   0.0    5
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   4e-25  1
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence.    36   0.003  8
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    34   0.006  9
AL672188|AL672188.6 Mouse DNA sequence from clone RP23-53B2 on chromosome X.    36   0.11   7
AC115592|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence.    34   0.13   8
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    40   0.21   10
DU065691|DU065691.1 73206 Tomato HindIII BAC Library Lycopersicon esculentum genomic clone LE_HBa0147N04 3, genomic survey sequence.    34   0.27   3
DT633626|DT633626.1 EST1148557 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFW90 3' end, mRNA sequence.    48   0.28   1
DT364098|DT364098.1 JGI_ANNN9278.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN9278 3', mRNA sequence.    48   0.28   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   274   2e-73
AJ969441_1(AJ969441|pid:none) Trypanosoma cruzi garp gene for gl...    38   0.41
CP001078_829(CP001078|pid:none) Clostridium botulinum E3 str. Al...    36   1.2
AP007164_721(AP007164|pid:none) Aspergillus oryzae RIB40 genomic...    36   1.2
AP004317_15(AP004317|pid:none) Oryza sativa Japonica Group genom...    35   2.0
AE014186_170(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    35   2.0
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c...    35   2.0
(Q54F33) RecName: Full=Uncharacterized protein DDB_G0291143;           35   3.5
AM920435_502(AM920435|pid:none) Penicillium chrysogenum Wisconsi...    35   3.5
EU579525_1(EU579525|pid:none) Plasmodium yoelii sporozoite and l...    34   4.5

 psg: 0.70  gvh: 0.23  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for SHB140 is nuc

>SHB140Z.Seq
NNNNNNNNNNCCAGAGAGACTATATGAAGAAATTCATAATTNCCAATTTGAATAAAGCAG
TTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACT
CTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAG
ATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGT
ATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAAT
TACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTT
CAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAAC
AACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAG
AATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCT
ACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATA
AACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTA
AAAATCAATTAAAAAATATTCAACATNAACAACAAATCCAAGAACAACAAGATAAATTAA
ATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAANATTNATCATTCT
TTCTTTTNAAAAA