>SHB132 (SHB132Q) /CSM/SH/SHB1-B/SHB132Q.Seq.d/
XXXXXXXXXXATAATCATACATTCCTTAGGGAGAATCGTGATCCAGTCAAGAAAATGAAA
CATCTCCTCAAGGAATACTTTAGTCCAAATCAATCAGAGAGAGGTTTTTCATTGGCTTTG
GAACATGGCATTGGTGGTGCACGTCTTTCTCACAATCATCGTAAACAATATAACTATGTA
TATCAATCACTCTCNTTGTGGCAACATATTCTTCATGATATGTTTAAACTTTGGTACTTT
GCAGAAATTGATCTTTTATGCGGACACAGATATCAATTATCNAACACTGGTCAAGGTNTA
AATCGTATTCAACAATGTCCAAACGTTGGTAAAATTATGCATAGTATTCTACGTCAAACT
CAAAAAAAAGTTGGTGATGATTGGGTTGGTTCTTCCGTTATTCATTTGGGTGATCATAAC
GTTCCAAACTCTTTGGTTTTCATCGATAAATACACTCAAATCTCTAGAATCCTAAGTCCA
ATCGTTTTAACCATTGAATATATTCCAAAGATCACCGATCCAAATTTAGTTGCTTACATC
AAAAACACCTTTGGTGGTCCACAAACTTTAACCAAAATCATCCTTTGTGATTTCTTTAAA
CACGCTTTCGATGGTAGTGGTGCCGATAACTTTTTCGATGCGGGCTCTTGTATTGATGGT
AGA

---NHTFLRENRDPVKKMKHLLKEYFSPNQSERGFSLALEHGIGGARLSHNHRKQYNYVY
QSLSLWQHILHDMFKLWYFAEIDLLCGHRYQLSNTGQGXNRIQQCPNVGKIMHSILRQTQ
KKVGDDWVGSSVIHLGDHNVPNSLVFIDKYTQISRILSPIVLTIEYIPKITDPNLVAYIK
NTFGGPQTLTKIILCDFFKHAFDGSGADNFFDAGSCIDGR

Frame A:
---*syip*ges*ssqenetspqgil*sksirerffigfgtwhwwctsfsqss*ti*lci
sitlxvatyss*yv*tlvlcrn*sfmrtqisiixhwsrxksystmskrw*nya*ystsns
kksw**lgwffrysfg*s*rsklfgfhr*ihsnl*npksnrfnh*iyskdhrskfsclhq
khlwwstnfnqnhpl*fl*trfrw*wcr*lfrcglly*w*


Frame B:
---NHTFLRENRDPVKKMKHLLKEYFSPNQSERGFSLALEHGIGGARLSHNHRKQYNYVY
QSLSLWQHILHDMFKLWYFAEIDLLCGHRYQLSNTGQGXNRIQQCPNVGKIMHSILRQTQ
KKVGDDWVGSSVIHLGDHNVPNSLVFIDKYTQISRILSPIVLTIEYIPKITDPNLVAYIK
NTFGGPQTLTKIILCDFFKHAFDGSGADNFFDAGSCIDGR


Frame C:
---iihslgriviqsrk*nissrntlvqinqrevfhwlwnmalvvhvfltiivnnitmyi
nhsxcgniffmiclnfgtlqklifyadtdinyxtlvkv*ivfnnvqtlvklcivfyvklk
kklvmiglvlplfiwviitfqtlwfssintlksles*vqsf*plnifqrspiqi*lltsk
tplvvhkl*pkssfvislntlsmvvvpitfsmralvlmv

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHB132 (SHB132Q) /CSM/SH/SHB1-B/SHB132Q.Seq.d/                       1229   0.0
VHO745 (VHO745Q) /CSM/VH/VHO7-B/VHO745Q.Seq.d/                       1221   0.0
VHL654 (VHL654Q) /CSM/VH/VHL6-C/VHL654Q.Seq.d/                       1221   0.0
VHI553 (VHI553Q) /CSM/VH/VHI5-C/VHI553Q.Seq.d/                       1221   0.0
VHC753 (VHC753Q) /CSM/VH/VHC7-C/VHC753Q.Seq.d/                       1221   0.0
VHA539 (VHA539Q) /CSM/VH/VHA5-B/VHA539Q.Seq.d/                       1221   0.0
SHD321 (SHD321Q) /CSM/SH/SHD3-A/SHD321Q.Seq.d/                       1221   0.0
CHQ507 (CHQ507Q) /CSM/CH/CHQ5-A/CHQ507Q.Seq.d/                       1221   0.0
CHM612 (CHM612Q) /CSM/CH/CHM6-A/CHM612Q.Seq.d/                       1221   0.0
CHL110 (CHL110Q) /CSM/CH/CHL1-A/CHL110Q.Seq.d/                       1221   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC021798|AC021798.5 Homo sapiens clone RP11-25K3, WORKING DRAFT SEQUENCE, 17 unorderedpieces.    48   0.23   1
AC099065|AC099065.2 Homo sapiens chromosome 1 clone RP11-105I12, complete sequence.    48   0.23   1
AC096542|AC096542.2 Homo sapiens chromosome 1 clone RP11-332L18, complete sequence.    48   0.23   1
AL163892|AL163892.1 Scherffelia dubia EST clone 454.               46   0.92   1
AC142494|AC142494.1 Rattus norvegicus clone CH230-164M14, *** SEQUENCING IN PROGRESS ***, 34 unordered pieces.    46   0.92   1
AC097288|AC097288.8 Rattus norvegicus clone CH230-28A10, WORKING DRAFT SEQUENCE, 3 unordered pieces.    46   0.92   1
AC168651|AC168651.2 Strongylocentrotus purpuratus clone R3-3017G4, WORKING DRAFT SEQUENCE, 31 unordered pieces.    38   0.96   4
CX300821|CX300821.1 C08002F02SK PhyRootSw1 Citrus sinensis cDNA clone C08002F02, mRNA sequence.    40   1.1    2
AC157249|AC157249.2 Dasypus novemcinctus clone VMRC5-110M7, WORKING DRAFT SEQUENCE.    44   3.6    1
CZ889120|CZ889120.1 ftaa003d001f03t0 Bread wheat methylation filtered library (LibID: 111) Triticum aestivum genomic, genomic survey sequence.    44   3.6    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001575_110(CP001575|pid:none) Micromonas sp. RCC299 chromosome...   270   4e-71
CR382131_1131(CR382131|pid:none) Yarrowia lipolytica strain CLIB...   248   8e-65
CR940353_528(CR940353|pid:none) Theileria annulata strain Ankara...   226   3e-58
CP001142_478(CP001142|pid:none) Phaeodactylum tricornutum CCAP 1...   221   1e-56
AM910996_269(AM910996|pid:none) Plasmodium knowlesi strain H chr...   204   2e-51
AL844507_105(AL844507|pid:none) Plasmodium falciparum 3D7 chromo...   204   2e-51
CR380956_239(CR380956|pid:none) Candida glabrata strain CBS138 c...   199   6e-50
CP000081_414(CP000081|pid:none) Leishmania major chromosome 35, ...   197   2e-49
CR382125_995(CR382125|pid:none) Kluyveromyces lactis strain NRRL...   196   4e-49
AM502253_428(AM502253|pid:none) Leishmania infantum chromosome 35.    196   5e-49

 psg: 0.54  gvh: 0.51  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.06
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 32.0 %: nuclear
	 24.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SHB132 is cyt

>SHB132Z.Seq
NNNNNNNNNNATAATCATACATTCCTTAGGGAGAATCGTGATCCAGTCAAGAAAATGAAA
CATCTCCTCAAGGAATACTTTAGTCCAAATCAATCAGAGAGAGGTTTTTCATTGGCTTTG
GAACATGGCATTGGTGGTGCACGTCTTTCTCACAATCATCGTAAACAATATAACTATGTA
TATCAATCACTCTCNTTGTGGCAACATATTCTTCATGATATGTTTAAACTTTGGTACTTT
GCAGAAATTGATCTTTTATGCGGACACAGATATCAATTATCNAACACTGGTCAAGGTNTA
AATCGTATTCAACAATGTCCAAACGTTGGTAAAATTATGCATAGTATTCTACGTCAAACT
CAAAAAAAAGTTGGTGATGATTGGGTTGGTTCTTCCGTTATTCATTTGGGTGATCATAAC
GTTCCAAACTCTTTGGTTTTCATCGATAAATACACTCAAATCTCTAGAATCCTAAGTCCA
ATCGTTTTAACCATTGAATATATTCCAAAGATCACCGATCCAAATTTAGTTGCTTACATC
AAAAACACCTTTGGTGGTCCACAAACTTTAACCAAAATCATCCTTTGTGATTTCTTTAAA
CACGCTTTCGATGGTAGTGGTGCCGATAACTTTTTCGATGCGGGCTCTTGTATTGATGGT
AGA