>SHB116 (SHB116Q) /CSM/SH/SHB1-A/SHB116Q.Seq.d/
CTGTTGGCCTACTGGNATTGACCCGCAATTAGTAATTAGTAAAGNAATGAAATTAAAACA
TTTAACTATTTTTTTATTTATTTTTATTTATAGGTTTTTATTTGTTAAATCGGATTGTTA
TCTAATAAACAATGAAAGGCCGGAGACAAAAATAACCAAAATCCGATGTGATGATCAAGT
TATTTCCATTCTTTTAAATCCAAATAATAGAACTGATGCAACACTGGAAAAGGACACTGA
TGGAAAGTTTTATTTTGATGTTGTTAATTTTCCATACAAGGATAGACTTTGTGATTATAC
CTATGATATTTATTTTTTACCAGAAATCCCATCCCTTCCATCTGTCCCCACAATAGGAGG
ATCCGTTAATTTCACATATAACTATCCTTGTACAAGTGTTTATGGTAGAATAAAACCTTT
GAATATAGCAAACAAAATTGTAACACCATACAATATCAATTTAGACCAGTTCACCATGAG
AATACAACCAGGCTGTGGAGATTTAATTATAAATTCAGGCTCAAGAGTAATTTATAATGC
TTCATATCAAACTGGAGATATACCAAATAAACCAACAATCGATGACCAAGGAAATATTAC
CATTCAAGGAAGTAACCTTTACAACACCCAAATTAAAATTAATTCAAATGATCCCGTTGA
AXXXXXXXXXXTAATCGATGGTAAACCATGTACACAACCTGAAATCAACATTCACACTTA
TTCTAGTTTAACCTGTAATGTAACCAACTATGATGAAATGCTAAAATATAACTACTCCAA
TACTAAATTCAATATCAGTATCTCTGTTGATGGTCAATACTTTATTGCTCAAATTTTCCA
ATTTAAATATGAATCAACAATTAGTTATAGTGAAAATAAGTCATCAGGATTTCCAAATGA
AATGTATATCGGTATTGTTGCAATTATAATATTTTTAGCATTAATTTTCTTTGCTATTAA
AACACAGGTTGAAAAATATATTGAAGAGAGAAGAGCCAGAAAAGCATTTAGATCAGTTGA
TAATCTACGTCTTAAACTTCGTGAGAAACATGCTGCTGAAATCGCTAAACATTATTCATT
TGGTTATGAAAGCGCTCCAAAACCAAATAAAAGTTATTTCTATGATTTAGGAAAGAAATT
ATCTAGACTCCCACTCATTAGATGTTGTTTCAAAGAACATACTGATTAAATACTATTTCC
AAATTCAAATCCAATAATATCCAATTCTAAATTAAACCTAAACCAAATTCACCAATCTAT
AATCAAATAATCAATTTATATCTTGTAATTGTTTTTGTTCTTGTATCATCTCATCTTCAA
TATCTATCTACAATTTTTTTCTTTTACTTCTAATATATTTAAAACAAATAAATAAATAAA
TAAAAAAAAGCAAANATACTCAAT

CWPTGIDPQLVISKXMKLKHLTIFLFIFIYRFLFVKSDCYLINNERPETKITKIRCDDQV
ISILLNPNNRTDATLEKDTDGKFYFDVVNFPYKDRLCDYTYDIYFLPEIPSLPSVPTIGG
SVNFTYNYPCTSVYGRIKPLNIANKIVTPYNINLDQFTMRIQPGCGDLIINSGSRVIYNA
SYQTGDIPNKPTIDDQGNITIQGSNLYNTQIKINSNDPVE---

---IDGKPCTQPEINIHTYSSLTCNVTNYDEMLKYNYSNTKFNISISVDGQYFIAQIFQF
KYESTISYSENKSSGFPNEMYIGIVAIIIFLALIFFAIKTQVEKYIEERRARKAFRSVDN
LRLKLREKHAAEIAKHYSFGYESAPKPNKSYFYDLGKKLSRLPLIRCCFKEHTD*ilfpn
snpiisnsklnlnqihqsiik*siyil*lflflyhlifniylqffsftsnifktnk*ink
kkqxys

Frame A:
llaywx*paisn**xneiktfnyffiyfyl*vfic*igllsnkq*kagdknnqnpm**ss
yfhsfksk**n*cntgkgh*wkvlf*cc*fsiqg*tl*lyl*ylfftrnpipsicphnrr
ir*fhi*lslykclw*nktfeyskqncntiqyqfrpvhhenttrlwrfnykfrlksnl*c
fisnwrytk*tnnr*prkyyhsrk*plqhpn*n*fk*sr*---

---*smvnhvhnlkstftlilv*pvm*ptmmkc*nittpilnsisvsllmvntlllkfsn
lnmnqqlvivkishqdfqmkcisvllql*yf*h*fslllkhrlknilkreepekhldqli
iyvlnfvrnmllkslniihlvmkalqnqikvismi*ernyldshsldvvsknilikyyfq
iqiq*ypiln*t*tkftnl*snnqfiscncfcsciisssisiynfflllliylkqink*i
kkskxtq

Frame B:
CWPTGIDPQLVISKXMKLKHLTIFLFIFIYRFLFVKSDCYLINNERPETKITKIRCDDQV
ISILLNPNNRTDATLEKDTDGKFYFDVVNFPYKDRLCDYTYDIYFLPEIPSLPSVPTIGG
SVNFTYNYPCTSVYGRIKPLNIANKIVTPYNINLDQFTMRIQPGCGDLIINSGSRVIYNA
SYQTGDIPNKPTIDDQGNITIQGSNLYNTQIKINSNDPVE---

---nrw*tmytt*nqhshlf*fnl*cnql**naki*llqy*iqyqylc*wsilycsnfpi
*i*inn*l**k*virisk*nvyryccnynifsinflcy*ntg*kiy*reksqksi*is**
sts*ts*etcc*nr*tlfiwl*krsktk*klfl*frkeii*tpth*mlfqrty*lntisk
fksnniqf*ikpkpnspiynqiinlylvivfvlvsshlqylstifffyf*yi*nk*ink*
kkaxiln

Frame C:
vgllxltrn**lvkx*n*ni*lffylflfigfyllnrivi**tmkgrrqk*pksdvmikl
fpff*iqiielmqhwkrtlmesfilmllifhtridfviipmififyqkshpfhlspq*ed
plishitilvqvfmve*nl*i*qtkl*hhtisi*tssp*eynqavei*l*iqaqe*fiml
hikleiyqinqqsmtkeilpfkevtfttpklkliqmipl---

---IDGKPCTQPEINIHTYSSLTCNVTNYDEMLKYNYSNTKFNISISVDGQYFIAQIFQF
KYESTISYSENKSSGFPNEMYIGIVAIIIFLALIFFAIKTQVEKYIEERRARKAFRSVDN
LRLKLREKHAAEIAKHYSFGYESAPKPNKSYFYDLGKKLSRLPLIRCCFKEHTD*ilfpn
snpiisnsklnlnqihqsiik*siyil*lflflyhlifniylqffsftsnifktnk*ink
kkqxys

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHB116 (SHB116Q) /CSM/SH/SHB1-A/SHB116Q.Seq.d/                       2389   0.0
SHL342 (SHL342Q) /CSM/SH/SHL3-B/SHL342Q.Seq.d/                       1322   0.0
SHK745 (SHK745Q) /CSM/SH/SHK7-B/SHK745Q.Seq.d/                       1322   0.0
SHJ615 (SHJ615Q) /CSM/SH/SHJ6-A/SHJ615Q.Seq.d/                       1322   0.0
SHG893 (SHG893Q) /CSM/SH/SHG8-D/SHG893Q.Seq.d/                       1322   0.0
SHG659 (SHG659Q) /CSM/SH/SHG6-C/SHG659Q.Seq.d/                       1322   0.0
SHD567 (SHD567Q) /CSM/SH/SHD5-C/SHD567Q.Seq.d/                       1322   0.0
SHA870 (SHA870Q) /CSM/SH/SHA8-C/SHA870Q.Seq.d/                       1322   0.0
CHI128 (CHI128Q) /CSM/CH/CHI1-B/CHI128Q.Seq.d/                       1322   0.0
CHF618 (CHF618Q) /CSM/CH/CHF6-A/CHF618Q.Seq.d/                       1322   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.   240   9e-94  13
AZ687404|AZ687404.1 ENTIV16TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.095  2
AZ532160|AZ532160.1 ENTCE42TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.095  2
BH150005|BH150005.1 ENTQN09TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.095  2
AZ551491|AZ551491.1 ENTFT25TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.095  2
AZ672938|AZ672938.1 ENTMM06TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.096  2
AC122168|AC122168.14 Medicago truncatula clone mth2-4o4, complete sequence.    42   0.21   6
DD010735|DD010735.1 Diagnosis of known genetic Parameters within the MHC.    36   0.23   16
AC114778|AC114778.5 Homo sapiens chromosome 2 clone RP11-516O5, complete sequence.    34   0.30   7
DU571553|DU571553.1 OO__Ba0057P22.f OO__Ba Oryza officinalis genomic clone OO__Ba0057P22 5', genomic survey sequence.    48   0.50   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FJ374971_1(FJ374971|pid:none) Dictyostelium discoideum strain AX...   394   e-108
FJ374968_1(FJ374968|pid:none) Dictyostelium discoideum strain QS...   394   e-108
FJ374973_1(FJ374973|pid:none) Dictyostelium discoideum strain QS...   394   e-108
FJ374970_1(FJ374970|pid:none) Dictyostelium discoideum strain QS...   394   e-108
FJ374903_1(FJ374903|pid:none) Dictyostelium discoideum strain QS...   291   5e-77
FJ374895_1(FJ374895|pid:none) Dictyostelium discoideum strain QS...   291   5e-77
FJ374905_1(FJ374905|pid:none) Dictyostelium discoideum strain QS...   290   8e-77
FJ374919_1(FJ374919|pid:none) Dictyostelium discoideum strain QS...   290   8e-77
FJ374902_1(FJ374902|pid:none) Dictyostelium discoideum strain QS...   289   2e-76
FJ374918_1(FJ374918|pid:none) Dictyostelium discoideum strain QS...   288   2e-76

 psg: 0.75  gvh: 0.44  alm: 0.08  top: 0.37  tms: 0.13  mit: 0.26  mip: 0.06
 nuc: 0.06  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 16.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: nuclear
	  4.0 %: vesicles of secretory system

>> prediction for SHB116 is end

>SHB116F.Seq
CTGTTGGCCTACTGGNATTGACCCGCAATTAGTAATTAGTAAAGNAATGAAATTAAAACA
TTTAACTATTTTTTTATTTATTTTTATTTATAGGTTTTTATTTGTTAAATCGGATTGTTA
TCTAATAAACAATGAAAGGCCGGAGACAAAAATAACCAAAATCCGATGTGATGATCAAGT
TATTTCCATTCTTTTAAATCCAAATAATAGAACTGATGCAACACTGGAAAAGGACACTGA
TGGAAAGTTTTATTTTGATGTTGTTAATTTTCCATACAAGGATAGACTTTGTGATTATAC
CTATGATATTTATTTTTTACCAGAAATCCCATCCCTTCCATCTGTCCCCACAATAGGAGG
ATCCGTTAATTTCACATATAACTATCCTTGTACAAGTGTTTATGGTAGAATAAAACCTTT
GAATATAGCAAACAAAATTGTAACACCATACAATATCAATTTAGACCAGTTCACCATGAG
AATACAACCAGGCTGTGGAGATTTAATTATAAATTCAGGCTCAAGAGTAATTTATAATGC
TTCATATCAAACTGGAGATATACCAAATAAACCAACAATCGATGACCAAGGAAATATTAC
CATTCAAGGAAGTAACCTTTACAACACCCAAATTAAAATTAATTCAAATGATCCCGTTGA
ANNNNNNNNNN

>SHB116Z.Seq
NNNNNNNNNNTAATCGATGGTAAACCATGTACACAACCTGAAATCAACATTCACACTTAT
TCTAGTTTAACCTGTAATGTAACCAACTATGATGAAATGCTAAAATATAACTACTCCAAT
ACTAAATTCAATATCAGTATCTCTGTTGATGGTCAATACTTTATTGCTCAAATTTTCCAA
TTTAAATATGAATCAACAATTAGTTATAGTGAAAATAAGTCATCAGGATTTCCAAATGAA
ATGTATATCGGTATTGTTGCAATTATAATATTTTTAGCATTAATTTTCTTTGCTATTAAA
ACACAGGTTGAAAAATATATTGAAGAGAGAAGAGCCAGAAAAGCATTTAGATCAGTTGAT
AATCTACGTCTTAAACTTCGTGAGAAACATGCTGCTGAAATCGCTAAACATTATTCATTT
GGTTATGAAAGCGCTCCAAAACCAAATAAAAGTTATTTCTATGATTTAGGAAAGAAATTA
TCTAGACTCCCACTCATTAGATGTTGTTTCAAAGAACATACTGATTAAATACTATTTCCA
AATTCAAATCCAATAATATCCAATTCTAAATTAAACCTAAACCAAATTCACCAATCTATA
ATCAAATAATCAATTTATATCTTGTAATTGTTTTTGTTCTTGTATCATCTCATCTTCAAT
ATCTATCTACAATTTTTTTCTTTTACTTCTAATATATTTAAAACAAATAAATAAATAAAT
AAAAAAAAGCAAANATACTCAAT

>SHB116P.Seq
CTGTTGGCCTACTGGNATTGACCCGCAATTAGTAATTAGTAAAGNAATGAAATTAAAACA
TTTAACTATTTTTTTATTTATTTTTATTTATAGGTTTTTATTTGTTAAATCGGATTGTTA
TCTAATAAACAATGAAAGGCCGGAGACAAAAATAACCAAAATCCGATGTGATGATCAAGT
TATTTCCATTCTTTTAAATCCAAATAATAGAACTGATGCAACACTGGAAAAGGACACTGA
TGGAAAGTTTTATTTTGATGTTGTTAATTTTCCATACAAGGATAGACTTTGTGATTATAC
CTATGATATTTATTTTTTACCAGAAATCCCATCCCTTCCATCTGTCCCCACAATAGGAGG
ATCCGTTAATTTCACATATAACTATCCTTGTACAAGTGTTTATGGTAGAATAAAACCTTT
GAATATAGCAAACAAAATTGTAACACCATACAATATCAATTTAGACCAGTTCACCATGAG
AATACAACCAGGCTGTGGAGATTTAATTATAAATTCAGGCTCAAGAGTAATTTATAATGC
TTCATATCAAACTGGAGATATACCAAATAAACCAACAATCGATGACCAAGGAAATATTAC
CATTCAAGGAAGTAACCTTTACAACACCCAAATTAAAATTAATTCAAATGATCCCGTTGA
A----------TAATCGATGGTAAACCATGTACACAACCTGAAATCAACATTCACACTTA
TTCTAGTTTAACCTGTAATGTAACCAACTATGATGAAATGCTAAAATATAACTACTCCAA
TACTAAATTCAATATCAGTATCTCTGTTGATGGTCAATACTTTATTGCTCAAATTTTCCA
ATTTAAATATGAATCAACAATTAGTTATAGTGAAAATAAGTCATCAGGATTTCCAAATGA
AATGTATATCGGTATTGTTGCAATTATAATATTTTTAGCATTAATTTTCTTTGCTATTAA
AACACAGGTTGAAAAATATATTGAAGAGAGAAGAGCCAGAAAAGCATTTAGATCAGTTGA
TAATCTACGTCTTAAACTTCGTGAGAAACATGCTGCTGAAATCGCTAAACATTATTCATT
TGGTTATGAAAGCGCTCCAAAACCAAATAAAAGTTATTTCTATGATTTAGGAAAGAAATT
ATCTAGACTCCCACTCATTAGATGTTGTTTCAAAGAACATACTGATTAAATACTATTTCC
AAATTCAAATCCAATAATATCCAATTCTAAATTAAACCTAAACCAAATTCACCAATCTAT
AATCAAATAATCAATTTATATCTTGTAATTGTTTTTGTTCTTGTATCATCTCATCTTCAA
TATCTATCTACAATTTTTTTCTTTTACTTCTAATATATTTAAAACAAATAAATAAATAAA
TAAAAAAAAGCAAANATACTCAAT