SHB110
Library SH
(Link to library)
Clone ID SHB110
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16526-1
Original site URL
Representative seq. ID SHB110P
(Link to Original site)
Representative DNA sequence
>SHB110 (SHB110Q) /CSM/SH/SHB1-A/SHB110Q.Seq.d/
CACTGTTGGCCTACTGGGCACTCGGTGCAAACAATGGTAATTTCTTTAGTTGTGATATCT
CTTCTCCAGTTGATACTTCNAATAGGCCTTCATGTAGTTCTCTTTTCTCTTCTGCAACTT
TACAAACTTTGGGTAGTTCTCCAAGATGTGAATATACTGCTTCAAACATTCTAATGGTTA
CATTGGGTAGTGGTGAAAGTGTATCAGTTGGCCAACAATTGGAATTTTCTCAAGGTGGAA
TCACTTCAAAAGATGGTAGTAAGAATAATTATCAAACTATAACATTGGAACCACCACAAG
ATTCAACTCCAGTGGTAGATATTAAAGCTCCAAATGTTTTAGATTCATGTAGTCCATTGG
TATTAGATGCTAGTCATTCAAAAGGTGGTAATGGAAAAGCATTAACCTATGATTGGTCGG
TTAGTGGGGCAGATACAAACACTCAATTAAATAATCTATTGGATCAAAATAATGCAACCA
TAACAATTCCAAATGATCTTTTGTCATCTGGTCAAACTTATACTTTTACACTTAAAATCA
CAAATTGGTTAAAGAAATCTGATAGCGCAAGTGTTTCAGTAACAAAGAAXXXXXXXXXXC
CTATGCTGATATGGTTTATAATGTTTTTTCAGACATTTTAGTGGTATCCAATTCATTGGC
AGATGGTATTCTTCAAAGAACTGCAATTGGTGAAGAACCATTTACAGTTGCAAGTGATAA
AGGTTTCTCGATTACAACATTTAAAACTCTACATATGGAATTAAGTAAGAGTGGTCAATC
GATTGGTTTCAAAAAGGATGATGAAGGTCAATCTCTTGATGGTGAAAAACTTGCTTTCAC
TCCAAAATTCAGTATTCCATCAAGTGTTTTATCAAAGAATAAATTAAAACAAACCTCTGA
AATCACTGGTAAACTAATTACAGTTCCATCAAATATTCATTTCAATCATAAATCTGATCA
AACCATTTTCCCAAAAACTGTTTCACTTGAACTTTTCAATGGTGGCTCTCAATTATCAAT
CAATGGCCTTAAAGATCAAATTATCATTGATATGGGAAAACATTCACCACCAAAAGATAA
AGAATTTAAATGTGGTTGGTGGAGCTCCAATAAAAAAGAATGGTTAACAGATGGTTGTTC
AACCCATAAAGTAGATGGTAATATTCAATGTAAATGTAACCATCTTACAGAGTTTGGTTT
AATTGAATTTGCAAAATCCTCTCAAAACATTTGGATCATTATTGGACCAGTAGTTGGTGG
TGTTGTATTTGCAGCTGCAAGGTTGGTACTGTTGTATGGTAAAGAGAAAGAAAAACAAAA
ACAAAAAGAACAAATCAAAGAAAACCAAAGAACAA
sequence update 2002.10.25
Translated Amino Acid sequence
LLAYWALGANNGNFFSCDISSPVDTSNRPSCSSLFSSATLQTLGSSPRCEYTASNILMVT
LGSGESVSVGQQLEFSQGGITSKDGSKNNYQTITLEPPQDSTPVVDIKAPNVLDSCSPLV
LDASHSKGGNGKALTYDWSVSGADTNTQLNNLLDQNNATITIPNDLLSSGQTYTFTLKIT
NWLKKSDSASVSVTK---

---YADMVYNVFSDILVVSNSLADGILQRTAIGEEPFTVASDKGFSITTFKTLHMELSKS
GQSIGFKKDDEGQSLDGEKLAFTPKFSIPSSVLSKNKLKQTSEITGKLITVPSNIHFNHK
SDQTIFPKTVSLELFNGGSQLSINGLKDQIIIDMGKHSPPKDKEFKCGWWSSNKKEWLTD
GCSTHKVDGNIQCKCNHLTEFGLIEFAKSSQNIWIIIGPVVGGVVFAAARLVLLYGKEKE
KQKQKEQIKENQRT


Translated Amino Acid sequence (All Frames)
Frame A:
hcwptghsvqtmvislvvisllqlilxiglhvvlfsllqlyklwvvlqdvnillqtf*wl
hwvvvkvyqlannwnflkveslqkmvvriiikl*hwnhhkiqlqw*ilklqmf*ihvvhw
y*mlviqkvvmekh*pmigrlvgqiqtln*iiywikimqp*qfqmifchlvklillhlks
qig*rnliaqvfq*qr---

---pmliwfimffqtf*wypihwqmvffkelqlvknhlqlqvikvsrlqhlklyiwn*vr
vvnrlvskrmmkvnllmvknllslqnsvfhqvfyqrin*nkplkslvn*lqfhqifisii
nlikpfsqklfhlnfsmvalnyqsmalkiklsliwenihhqkiknlnvvggapikkng*q
mvvqpik*mvifnvnvtilqslv*lnlqnplktfgslldq*lvvlylqlqgwyccmvkrk
knknkknkskktkeq

Frame B:
tvgllgtrckqw*fl*l*ylfss*yfx*afm*fsflfcnftnfg*fskm*iycfkhsngy
ig*w*kciswptigifsrwnhfkrw**e*lsnynigtttrfnssgry*sskcfrfm*sig
irc*sfkrw*wksinl*lvg*wgrykhsik*sigsk*cnhnnsk*sfviwsnlyfyt*nh
klvkei**rkcfsnke---

---lc*ygl*cffrhfsgiqfigrwysskncnw*rtiysck**rfldyni*nstygik*e
wsidwfqkg**rsis*w*ktcfhskiqysikcfike*iktnl*nhw*tnyssikysfqs*
i*snhfpkncft*tfqwwlsiinqwp*rsnyh*ygktfttkr*ri*mwlvelq*krmvnr
wlfnp*srw*ysm*m*psyrvwfn*ickilskhldhywtsswwccicsckvgtvvw*rer
ktktkrtnqrkpkn

Frame C:
LLAYWALGANNGNFFSCDISSPVDTSNRPSCSSLFSSATLQTLGSSPRCEYTASNILMVT
LGSGESVSVGQQLEFSQGGITSKDGSKNNYQTITLEPPQDSTPVVDIKAPNVLDSCSPLV
LDASHSKGGNGKALTYDWSVSGADTNTQLNNLLDQNNATITIPNDLLSSGQTYTFTLKIT
NWLKKSDSASVSVTK---

---YADMVYNVFSDILVVSNSLADGILQRTAIGEEPFTVASDKGFSITTFKTLHMELSKS
GQSIGFKKDDEGQSLDGEKLAFTPKFSIPSSVLSKNKLKQTSEITGKLITVPSNIHFNHK
SDQTIFPKTVSLELFNGGSQLSINGLKDQIIIDMGKHSPPKDKEFKCGWWSSNKKEWLTD
GCSTHKVDGNIQCKCNHLTEFGLIEFAKSSQNIWIIIGPVVGGVVFAAARLVLLYGKEKE
KQKQKEQIKENQRT

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHB110 (SHB110Q) /CSM/SH/SHB1-A/SHB110Q.Seq.d/ 2510 0.0
CHS340 (CHS340Q) /CSM/CH/CHS3-B/CHS340Q.Seq.d/ 1388 0.0
CHR330 (CHR330Q) /CSM/CH/CHR3-B/CHR330Q.Seq.d/ 1366 0.0
CHI765 (CHI765Q) /CSM/CH/CHI7-C/CHI765Q.Seq.d/ 1366 0.0
CHI163 (CHI163Q) /CSM/CH/CHI1-C/CHI163Q.Seq.d/ 1362 0.0
SHD232 (SHD232Q) /CSM/SH/SHD2-B/SHD232Q.Seq.d/ 1360 0.0
CHI747 (CHI747Q) /CSM/CH/CHI7-B/CHI747Q.Seq.d/ 1358 0.0
CFA721 (CFA721Q) /CSM/CF/CFA7-A/CFA721Q.Seq.d/ 1358 0.0
CHR576 (CHR576Q) /CSM/CH/CHR5-D/CHR576Q.Seq.d/ 1354 0.0
CHR150 (CHR150Q) /CSM/CH/CHR1-C/CHR150Q.Seq.d/ 1350 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CJ446780|CJ446780.1 Macaca fascicularis mRNA, clone: QflA-12082, 5' end, expressed in brain frontal lobe. 50 0.12 1
CJ481708|CJ481708.1 Macaca fascicularis mRNA, clone: QtrA-17424, 5' end, expressed in brain temporal lobe. 50 0.12 1
CJ468389|CJ468389.1 Macaca fascicularis mRNA, clone: QnpA-18245, 5' end, expressed in brain parietal lobe. 48 0.48 1
AC024453|AC024453.2 Homo sapiens chromosome 4 clone RP11-2B17 map 4, WORKING DRAFT SEQUENCE, 51 unordered pieces. 48 0.48 1
AC013774|AC013774.3 Homo sapiens clone RP11-10P1, WORKING DRAFT SEQUENCE, 11 unordered pieces. 48 0.48 1
CZ857443|CZ857443.1 OC__Ba0249B12.r OC__Ba Oryza coarctata genomic clone OC__Ba0249B12 3', genomic survey sequence. 48 0.48 1
AC103541|AC103541.6 Homo sapiens BAC clone RP11-818M13 from 4, complete sequence. 48 0.48 1
AC097518|AC097518.2 Homo sapiens BAC clone RP11-487E13 from 4, complete sequence. 48 0.48 1
AJ410884|AJ410884.1 Influenza A virus (swine/Cotes d'Armor/1515/99 (H1N1)) partial N1NA gene for Neuraminidase, genomic RNA. 42 0.93 2
AJ410883|AJ410883.1 Influenza A virus (swine/Cotes d'Armor/1482/99 (H1N1)) partial N1NA gene for Neuraminidase, genomic RNA. 42 0.95 2
dna update 2005.12.19
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EF203419_1(EF203419|pid:none) Strongylocentrotus purpuratus rece... 66 2e-09
AK154648_1(AK154648|pid:none) Mus musculus NOD-derived CD11c +ve... 50 2e-04
(Q8R0T6) RecName: Full=Probable G-protein coupled receptor 97; F... 50 2e-04
AK037149_1(AK037149|pid:none) Mus musculus 6 days neonate skin c... 50 2e-04
AF216967_1(AF216967|pid:none) Homo sapiens putative vascular ind... 50 2e-04
AB041939_1(AB041939|pid:none) Homo sapiens KPG_006 mRNA for G-pr... 50 2e-04
(Q8K3V3) RecName: Full=G-protein coupled receptor 56; Flags: Pre... 47 0.002
AK295345_1(AK295345|pid:none) Homo sapiens cDNA FLJ55998 complet... 46 0.003
AF166382_1(AF166382|pid:none) Mus musculus serpentine receptor (... 45 0.004
AY181246_1(AY181246|pid:none) Homo sapiens G protein-coupled rec... 45 0.007
protein update 2009. 4.15
PSORT

psg: 0.90 gvh: 0.59 alm: 0.24 top: 0.70 tms: 0.07 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.04 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 1.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: cytoplasmic
20.0 %: nuclear
16.0 %: vesicles of secretory system
12.0 %: mitochondrial
8.0 %: Golgi
8.0 %: endoplasmic reticulum
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: plasma membrane

>> prediction for SHB110 is cyt

5' end seq. ID SHB110F
5' end seq.
>SHB110F.Seq
CACTGTTGGCCTACTGGGCACTCGGTGCAAACAATGGTAATTTCTTTAGTTGTGATATCT
CTTCTCCAGTTGATACTTCNAATAGGCCTTCATGTAGTTCTCTTTTCTCTTCTGCAACTT
TACAAACTTTGGGTAGTTCTCCAAGATGTGAATATACTGCTTCAAACATTCTAATGGTTA
CATTGGGTAGTGGTGAAAGTGTATCAGTTGGCCAACAATTGGAATTTTCTCAAGGTGGAA
TCACTTCAAAAGATGGTAGTAAGAATAATTATCAAACTATAACATTGGAACCACCACAAG
ATTCAACTCCAGTGGTAGATATTAAAGCTCCAAATGTTTTAGATTCATGTAGTCCATTGG
TATTAGATGCTAGTCATTCAAAAGGTGGTAATGGAAAAGCATTAACCTATGATTGGTCGG
TTAGTGGGGCAGATACAAACACTCAATTAAATAATCTATTGGATCAAAATAATGCAACCA
TAACAATTCCAAATGATCTTTTGTCATCTGGTCAAACTTATACTTTTACACTTAAAATCA
CAAATTGGTTAAAGAAATCTGATAGCGCAAGTGTTTCAGTAACAAAGAANNNNNNNNNN
Length of 5' end seq. 599
3' end seq. ID SHB110Z
3' end seq.
>SHB110Z.Seq
NNNNNNNNNNCCTATGCTGATATGGTTTATAATGTTTTTTCAGACATTTTAGTGGTATCC
AATTCATTGGCAGATGGTATTCTTCAAAGAACTGCAATTGGTGAAGAACCATTTACAGTT
GCAAGTGATAAAGGTTTCTCGATTACAACATTTAAAACTCTACATATGGAATTAAGTAAG
AGTGGTCAATCGATTGGTTTCAAAAAGGATGATGAAGGTCAATCTCTTGATGGTGAAAAA
CTTGCTTTCACTCCAAAATTCAGTATTCCATCAAGTGTTTTATCAAAGAATAAATTAAAA
CAAACCTCTGAAATCACTGGTAAACTAATTACAGTTCCATCAAATATTCATTTCAATCAT
AAATCTGATCAAACCATTTTCCCAAAAACTGTTTCACTTGAACTTTTCAATGGTGGCTCT
CAATTATCAATCAATGGCCTTAAAGATCAAATTATCATTGATATGGGAAAACATTCACCA
CCAAAAGATAAAGAATTTAAATGTGGTTGGTGGAGCTCCAATAAAAAAGAATGGTTAACA
GATGGTTGTTCAACCCATAAAGTAGATGGTAATATTCAATGTAAATGTAACCATCTTACA
GAGTTTGGTTTAATTGAATTTGCAAAATCCTCTCAAAACATTTGGATCATTATTGGACCA
GTAGTTGGTGGTGTTGTATTTGCAGCTGCAAGGTTGGTACTGTTGTATGGTAAAGAGAAA
GAAAAACAAAAACAAAAAGAACAAATCAAAGAAAACCAAAGAACAA
Length of 3' end seq. 766
Connected seq. ID SHB110P
Connected seq.
>SHB110P.Seq
CACTGTTGGCCTACTGGGCACTCGGTGCAAACAATGGTAATTTCTTTAGTTGTGATATCT
CTTCTCCAGTTGATACTTCNAATAGGCCTTCATGTAGTTCTCTTTTCTCTTCTGCAACTT
TACAAACTTTGGGTAGTTCTCCAAGATGTGAATATACTGCTTCAAACATTCTAATGGTTA
CATTGGGTAGTGGTGAAAGTGTATCAGTTGGCCAACAATTGGAATTTTCTCAAGGTGGAA
TCACTTCAAAAGATGGTAGTAAGAATAATTATCAAACTATAACATTGGAACCACCACAAG
ATTCAACTCCAGTGGTAGATATTAAAGCTCCAAATGTTTTAGATTCATGTAGTCCATTGG
TATTAGATGCTAGTCATTCAAAAGGTGGTAATGGAAAAGCATTAACCTATGATTGGTCGG
TTAGTGGGGCAGATACAAACACTCAATTAAATAATCTATTGGATCAAAATAATGCAACCA
TAACAATTCCAAATGATCTTTTGTCATCTGGTCAAACTTATACTTTTACACTTAAAATCA
CAAATTGGTTAAAGAAATCTGATAGCGCAAGTGTTTCAGTAACAAAGAA----------C
CTATGCTGATATGGTTTATAATGTTTTTTCAGACATTTTAGTGGTATCCAATTCATTGGC
AGATGGTATTCTTCAAAGAACTGCAATTGGTGAAGAACCATTTACAGTTGCAAGTGATAA
AGGTTTCTCGATTACAACATTTAAAACTCTACATATGGAATTAAGTAAGAGTGGTCAATC
GATTGGTTTCAAAAAGGATGATGAAGGTCAATCTCTTGATGGTGAAAAACTTGCTTTCAC
TCCAAAATTCAGTATTCCATCAAGTGTTTTATCAAAGAATAAATTAAAACAAACCTCTGA
AATCACTGGTAAACTAATTACAGTTCCATCAAATATTCATTTCAATCATAAATCTGATCA
AACCATTTTCCCAAAAACTGTTTCACTTGAACTTTTCAATGGTGGCTCTCAATTATCAAT
CAATGGCCTTAAAGATCAAATTATCATTGATATGGGAAAACATTCACCACCAAAAGATAA
AGAATTTAAATGTGGTTGGTGGAGCTCCAATAAAAAAGAATGGTTAACAGATGGTTGTTC
AACCCATAAAGTAGATGGTAATATTCAATGTAAATGTAACCATCTTACAGAGTTTGGTTT
AATTGAATTTGCAAAATCCTCTCAAAACATTTGGATCATTATTGGACCAGTAGTTGGTGG
TGTTGTATTTGCAGCTGCAAGGTTGGTACTGTTGTATGGTAAAGAGAAAGAAAAACAAAA
ACAAAAAGAACAAATCAAAGAAAACCAAAGAACAA
Length of connected seq. 1345
Full length Seq ID -
Full length Seq. -
Length of full length seq. -