>SHB109 (SHB109Q) /CSM/SH/SHB1-A/SHB109Q.Seq.d/
XXXXXXXXXXAAGCAGTTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGT
TCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAA
ATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGT
GAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAA
CAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAAT
GAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAA
CAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAA
CTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAA
GAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAA
TTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAA
TCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATNAACAACAAATCCAAGAA
CAACAAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAA
AAANATTNATCATTCTTTCTTTTNAAAAAC

---AVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGE
DIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQ
QQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAEL
AKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHXQQIQEQQDKLNQEKNQQLLEQEQNQK
XXSFFLXKN

Frame A:
---sssrg*rn*kttkw*wftcckls*dcnsngkc*k**nyq*trch*tsstftty*kw*
ryr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*re*rrtifk*kfttt**e*kstt
ttrtttsssnkc*ttnr*tt*syqrisktrstketknstrercclle*c*ksst*igc*i
g*k**tresr*efssrettis*pn*ksikkystxttnprttr*iksrkkstiirtrtksk
xxiilsfxk


Frame B:
---AVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGE
DIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQ
QQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAEL
AKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHXQQIQEQQDKLNQEKNQQLLEQEQNQK
XXSFFLXKN


Frame C:
---qfkrlkklkdnkmvmvhll*tlirl*lkwemlkimklpmnkmplnklniynvlkmvk
ismsmklpnmklpf*mkmnkmllnykmkwtn*nsylkrmkknnfqikiynnlmrmkinnn
nkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfnkrtmlst*vmlkklnlnwmlnw
lkiinkrikmri*fkrnnnlltklkin*kifnxnnksknnkin*ikkkinny*nknkikx
ixhsffxk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL875 (SHL875Q) /CSM/SH/SHL8-D/SHL875Q.Seq.d/                        680   0.0
SHL866 (SHL866Q) /CSM/SH/SHL8-C/SHL866Q.Seq.d/                        680   0.0
SHL857 (SHL857Q) /CSM/SH/SHL8-C/SHL857Q.Seq.d/                        680   0.0
SHL828 (SHL828Q) /CSM/SH/SHL8-B/SHL828Q.Seq.d/                        680   0.0
SHL815 (SHL815Q) /CSM/SH/SHL8-A/SHL815Q.Seq.d/                        680   0.0
SHL770 (SHL770Q) /CSM/SH/SHL7-C/SHL770Q.Seq.d/                        680   0.0
SHL767 (SHL767Q) /CSM/SH/SHL7-C/SHL767Q.Seq.d/                        680   0.0
SHL751 (SHL751Q) /CSM/SH/SHL7-C/SHL751Q.Seq.d/                        680   0.0
SHL740 (SHL740Q) /CSM/SH/SHL7-B/SHL740Q.Seq.d/                        680   0.0
SHL708 (SHL708Q) /CSM/SH/SHL7-A/SHL708Q.Seq.d/                        680   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   680   0.0    4
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   4e-25  1
BH137529|BH137529.1 ENTPA17TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    34   0.087  3
AL672188|AL672188.6 Mouse DNA sequence from clone RP23-53B2 on chromosome X.    36   0.20   6
DT633626|DT633626.1 EST1148557 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFW90 3' end, mRNA sequence.    48   0.26   1
DT364098|DT364098.1 JGI_ANNN9278.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN9278 3', mRNA sequence.    48   0.26   1
DT347978|DT347978.1 JGI_CAAX10802.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX10802 5', mRNA sequence.    48   0.26   1
DT309975|DT309975.1 JGI_CAAX1517.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 5', mRNA sequence.    48   0.26   1
DT102344|DT102344.1 JGI_ANNN5669.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN5669 3', mRNA sequence.    48   0.26   1
DT309974|DT309974.1 JGI_CAAX1517.rev CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 3', mRNA sequence.    48   0.26   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   266   6e-70
AJ969441_1(AJ969441|pid:none) Trypanosoma cruzi garp gene for gl...    38   0.38
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c...    35   1.8
AP004317_15(AP004317|pid:none) Oryza sativa Japonica Group genom...    35   1.9
(Q54F33) RecName: Full=Uncharacterized protein DDB_G0291143;           35   3.2
AE014186_170(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    35   3.2
(Q54DK4) RecName: Full=Alpha-protein kinase 1;          Short=AK...    33   7.1
CP000806_1851(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...    33   7.1
AE001272_3(AE001272|pid:none) Lactococcus lactis DPC3147 plasmid...    33   9.2
AC009323_10(AC009323|pid:none) Arabidopsis thaliana chromosome I...    33   9.2

 psg: 0.75  gvh: 0.17  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for SHB109 is nuc

>SHB109Z.Seq
NNNNNNNNNNAAGCAGTTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGT
TCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAA
ATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGT
GAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAA
CAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAAT
GAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAA
CAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAA
CTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAA
GAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAA
TTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAA
TCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATNAACAACAAATCCAAGAA
CAACAAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAA
AAANATTNATCATTCTTTCTTTTNAAAAAC