SHA876
Library SH
(Link to library)
Clone ID SHA876
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13024-1|Contig-U16344-1
Original site URL
Representative seq. ID SHA876P
(Link to Original site)
Representative DNA sequence
>SHA876 (SHA876Q) /CSM/SH/SHA8-D/SHA876Q.Seq.d/
ATTCAATCAACAAACAAAAAACAACAATTTAAAAAAACAATAATTTATAGTAAAGTAAAA
ACAATTAAAGAATCACTAATTGTTTTTTTCTCCTCCTCACTATAAATTCCAATATTTTTT
TTTAAATTAATTTCCAGCTTTTCTGTTTTTTTACACAATCACAACCAACCCTATATCATT
ACTACCAACCCTATACCATTACAATCTTATTTATTAAATAATTATTATTTGTTGTATTAT
TTTAGTGTATATTTGTTGATTTAATATTTATTAGCAAGTAACAAACAAAAAAAAAAXXXX
XXXXXXGGTTCAATTGAATCAAAAGTTATTGATTTCACTCATGGTACCATTCAAGGTGTT
GGTGCTCTTAAATGTGGTACTTGTAACTTTGCCAATAAGATCGCTGCTAACCTCAACATT
GTTGGTAACGTTAAAATGGCCGCAACTGCAACTGTCTATGCAAACATTGATGCTTTAATG
TCAATCACCACCTCAACCCAAACCTCAATCTCTCAATCATCAACCAAGACTGTCAACGGT
AAGACCACCACTCAATCATCATCAAGCTCATCATCATCCATCTCTAAACAATTCGTTCCA
ATGATCGTTTGTTCAGGTACTGCTGATGTTGCTGGTAACCTCAATGTCGTTGCCTCAGAA
GCCAATCAAGCTAAAATTGCCTCTGGTACTGTATTCAAATTCATCTCAGCCCCAGTTGTT
AAAGGTAATGTCTCCTCAGTTAGCTGTCTCACCTCAAGCACTGCTGCTGCTGCTCAACAA
GCTGCCGGTGCTGCTGCTGCTGCTGCCCAAAAAGCTGCTATGGCTGCTGCCTCTAAAGTT
TGGTCAATTGTAAATTCACCATGTAACTGTGAATGTGGATTGAAGAGATTATAAATTGAT
TCAACTCCTCCTCTCCAATGACAATAAATTAAAATAATACAACTCATTCTTATTTTTCTT
TATTCTAACCAATGTATTTGTCAATTAACTTATTAACTTTTTAAACACACCCTTTTCAAT
TTTAAAACAATAAAAATTTACATA
sequence update 2002.10.25
Translated Amino Acid sequence
iqstnkkqqfkktiiyskvktikeslivffsssl*ipifffklissfsvflhnhnqpyii
ttnpiplqsyllnnyyllyyfsvylli*YLLASNKQKK---

---GSIESKVIDFTHGTIQGVGALKCGTCNFANKIAANLNIVGNVKMAATATVYANIDAL
MSITTSTQTSISQSSTKTVNGKTTTQSSSSSSSSISKQFVPMIVCSGTADVAGNLNVVAS
EANQAKIASGTVFKFISAPVVKGNVSSVSCLTSSTAAAAQQAAGAAAAAAQKAAMAAASK
VWSIVNSPCNCECGLKRL*idstpplq*q*ikiiqliliflysnqcicqlty*lfkhtlf
nfktikiyi


Translated Amino Acid sequence (All Frames)
Frame A:
iqstnkkqqfkktiiyskvktikeslivffsssl*ipifffklissfsvflhnhnqpyii
ttnpiplqsyllnnyyllyyfsvylli*YLLASNKQKK---

---GSIESKVIDFTHGTIQGVGALKCGTCNFANKIAANLNIVGNVKMAATATVYANIDAL
MSITTSTQTSISQSSTKTVNGKTTTQSSSSSSSSISKQFVPMIVCSGTADVAGNLNVVAS
EANQAKIASGTVFKFISAPVVKGNVSSVSCLTSSTAAAAQQAAGAAAAAAQKAAMAAASK
VWSIVNSPCNCECGLKRL*idstpplq*q*ikiiqliliflysnqcicqlty*lfkhtlf
nfktikiyi

Frame B:
fnqqtknnnlkkq*fivk*kqlknh*lffspphykfqyffln*fpaflffytittnpisl
lptlyhynliy*iiiicciilvyic*fniy*qvtnkkk---

---vqlnqkllislmvpfkvlvllnvvlvtlpirslltstllvtlkwpqlqlsmqtlml*
cqsppqpkpqslnhqprlstvrpplnhhqahhhpslnnsfq*sfvqvllmllvtsmslpq
kpiklklplvlysnssqpqllkvmspqlavspqalllllnklpvlllllpkkllwllplk
fgql*ihhvtvnvd*rdykliqlllsndnklk*ynsflfffiltnvfvn*linflntpfs
ilkq*kft

Frame C:
sinkqktti*knnnl**sknn*ritncffllltinsniff*infqlfcfftqsqptlyhy
yqpytitilfik*llfvvlf*cifvdlifisk*qtkkk---

---fn*iksy*fhswyhsrcwcs*mwyl*lcq*drc*pqhcw*r*ngrncnclckh*cfn
vnhhlnpnlnlsiinqdcqr*dhhsiiikliiihl*tirsndrlfryc*ccw*pqcrclr
sqss*nclwyciqihlspsc*r*clls*lshlkhccccstscrccccccpkscygccl*s
lvnckftm*l*mwieeiin*fnssspmtin*nntthsyfslf*pmylsinlltf*thpfq
f*nnknlh

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLE342 (SLE342Q) /CSM/SL/SLE3-B/SLE342Q.Seq.d/ 898 0.0
SLA101 (SLA101Q) /CSM/SL/SLA1-A/SLA101Q.Seq.d/ 898 0.0
SHL563 (SHL563Q) /CSM/SH/SHL5-C/SHL563Q.Seq.d/ 898 0.0
SHK865 (SHK865Q) /CSM/SH/SHK8-C/SHK865Q.Seq.d/ 898 0.0
SHK762 (SHK762Q) /CSM/SH/SHK7-C/SHK762Q.Seq.d/ 898 0.0
SHK536 (SHK536Q) /CSM/SH/SHK5-B/SHK536Q.Seq.d/ 898 0.0
SHG713 (SHG713Q) /CSM/SH/SHG7-A/SHG713Q.Seq.d/ 898 0.0
SHG514 (SHG514Q) /CSM/SH/SHG5-A/SHG514Q.Seq.d/ 898 0.0
SHG338 (SHG338Q) /CSM/SH/SHG3-B/SHG338Q.Seq.d/ 898 0.0
SHG152 (SHG152Q) /CSM/SH/SHG1-C/SHG152Q.Seq.d/ 898 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U83087|U83087.1 Dictyostelium discoideum rsc12 mRNA, partial cds. 898 0.0 2
AX344185|AX344185.1 Sequence 32 from Patent WO0200926. 40 0.073 4
AX251781|AX251781.1 Sequence 42 from Patent WO0168911. 40 0.073 4
BD460245|BD460245.1 Diagnosis of Diseases Associated with Cell Cycle. 40 0.073 4
BD452167|BD452167.1 Diagnosis of Diseases Associated with Cell Cycle. 40 0.073 4
AJ297856|AJ297856.1 Lucilia sericata partial bcd gene for bicoid protein. 50 0.094 1
AL845362|AL845362.4 Zebrafish DNA sequence from clone CH211-142H2 in linkage group 20. 38 0.29 3
AC156169|AC156169.2 Bos taurus clone CH240-50N13, *** SEQUENCING IN PROGRESS ***, 60 unordered pieces. 48 0.37 1
AC148223|AC148223.1 Colobus guereza clone CH272-19E23, WORKING DRAFT SEQUENCE, 4 ordered pieces. 48 0.37 1
AC127176|AC127176.3 Rattus norvegicus clone CH230-267P11, *** SEQUENCING IN PROGRESS ***, 1 ordered piece. 48 0.37 1
dna update 2005.12.18
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U83087_1(U83087|pid:none) Dictyostelium discoideum rsc12 mRNA, p... 269 1e-70
AY530539_1(AY530539|pid:none) Mimulus ringens deficiens (DEF) mR... 34 9.1

protein update 2008.11.12
PSORT

psg: 0.69 gvh: 0.45 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
44.0 %: nuclear
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for SHA876 is cyt

5' end seq. ID SHA876F
5' end seq.
>SHA876F.Seq
ATTCAATCAACAAACAAAAAACAACAATTTAAAAAAACAATAATTTATAGTAAAGTAAAA
ACAATTAAAGAATCACTAATTGTTTTTTTCTCCTCCTCACTATAAATTCCAATATTTTTT
TTTAAATTAATTTCCAGCTTTTCTGTTTTTTTACACAATCACAACCAACCCTATATCATT
ACTACCAACCCTATACCATTACAATCTTATTTATTAAATAATTATTATTTGTTGTATTAT
TTTAGTGTATATTTGTTGATTTAATATTTATTAGCAAGTAACAAACAAAAAAAAAANNNN
NNNNNN
Length of 5' end seq. 306
3' end seq. ID SHA876Z
3' end seq.
>SHA876Z.Seq
NNNNNNNNNNGGTTCAATTGAATCAAAAGTTATTGATTTCACTCATGGTACCATTCAAGG
TGTTGGTGCTCTTAAATGTGGTACTTGTAACTTTGCCAATAAGATCGCTGCTAACCTCAA
CATTGTTGGTAACGTTAAAATGGCCGCAACTGCAACTGTCTATGCAAACATTGATGCTTT
AATGTCAATCACCACCTCAACCCAAACCTCAATCTCTCAATCATCAACCAAGACTGTCAA
CGGTAAGACCACCACTCAATCATCATCAAGCTCATCATCATCCATCTCTAAACAATTCGT
TCCAATGATCGTTTGTTCAGGTACTGCTGATGTTGCTGGTAACCTCAATGTCGTTGCCTC
AGAAGCCAATCAAGCTAAAATTGCCTCTGGTACTGTATTCAAATTCATCTCAGCCCCAGT
TGTTAAAGGTAATGTCTCCTCAGTTAGCTGTCTCACCTCAAGCACTGCTGCTGCTGCTCA
ACAAGCTGCCGGTGCTGCTGCTGCTGCTGCCCAAAAAGCTGCTATGGCTGCTGCCTCTAA
AGTTTGGTCAATTGTAAATTCACCATGTAACTGTGAATGTGGATTGAAGAGATTATAAAT
TGATTCAACTCCTCCTCTCCAATGACAATAAATTAAAATAATACAACTCATTCTTATTTT
TCTTTATTCTAACCAATGTATTTGTCAATTAACTTATTAACTTTTTAAACACACCCTTTT
CAATTTTAAAACAATAAAAATTTACATA
Length of 3' end seq. 748
Connected seq. ID SHA876P
Connected seq.
>SHA876P.Seq
ATTCAATCAACAAACAAAAAACAACAATTTAAAAAAACAATAATTTATAGTAAAGTAAAA
ACAATTAAAGAATCACTAATTGTTTTTTTCTCCTCCTCACTATAAATTCCAATATTTTTT
TTTAAATTAATTTCCAGCTTTTCTGTTTTTTTACACAATCACAACCAACCCTATATCATT
ACTACCAACCCTATACCATTACAATCTTATTTATTAAATAATTATTATTTGTTGTATTAT
TTTAGTGTATATTTGTTGATTTAATATTTATTAGCAAGTAACAAACAAAAAAAAAA----
------GGTTCAATTGAATCAAAAGTTATTGATTTCACTCATGGTACCATTCAAGGTGTT
GGTGCTCTTAAATGTGGTACTTGTAACTTTGCCAATAAGATCGCTGCTAACCTCAACATT
GTTGGTAACGTTAAAATGGCCGCAACTGCAACTGTCTATGCAAACATTGATGCTTTAATG
TCAATCACCACCTCAACCCAAACCTCAATCTCTCAATCATCAACCAAGACTGTCAACGGT
AAGACCACCACTCAATCATCATCAAGCTCATCATCATCCATCTCTAAACAATTCGTTCCA
ATGATCGTTTGTTCAGGTACTGCTGATGTTGCTGGTAACCTCAATGTCGTTGCCTCAGAA
GCCAATCAAGCTAAAATTGCCTCTGGTACTGTATTCAAATTCATCTCAGCCCCAGTTGTT
AAAGGTAATGTCTCCTCAGTTAGCTGTCTCACCTCAAGCACTGCTGCTGCTGCTCAACAA
GCTGCCGGTGCTGCTGCTGCTGCTGCCCAAAAAGCTGCTATGGCTGCTGCCTCTAAAGTT
TGGTCAATTGTAAATTCACCATGTAACTGTGAATGTGGATTGAAGAGATTATAAATTGAT
TCAACTCCTCCTCTCCAATGACAATAAATTAAAATAATACAACTCATTCTTATTTTTCTT
TATTCTAACCAATGTATTTGTCAATTAACTTATTAACTTTTTAAACACACCCTTTTCAAT
TTTAAAACAATAAAAATTTACATA
Length of connected seq. 1034
Full length Seq ID -
Full length Seq. -
Length of full length seq. -