>SHA843 (SHA843Q) /CSM/SH/SHA8-B/SHA843Q.Seq.d/
AATTGTTATTAATATTATTATTATTTTTATTTATATTTTTCAATACTAAATTAATCATCC
TAATAATTCAATACCAACTTTATATTATTTTATGAAAATATTGAAAAAAAACAATAATAA
TTATAATTATTTATAATTAAATCTATATATATTTATTGATAAAAAAAAAACCNTTAAAAA
AAAAAAANNAAAANTAAAANTAATTTACCAANNCAAATNCTAAAATTTTNATTTTNATTT
TNATTTTNATTTNATTTTAAAAAAAAAAXXXXXXXXXXCAATGGATTTCCCAAGAGGTTG
TAAATCATTTGGTGGTTCATTCTGTATTCCAGGTGAATATTCAGCTTGGTCAAGTGTTTA
TTTCGAATCACAACCTTGGATTTCAGATTTAACAATGGATGGTGAAGATATGATAATTTC
AATTCGTGATCGTGGTGGTGATTTAGATCGTGATGTTGGTACCTATGATATGTTAAGAGC
TTGCTTTGATGGTGATCAATTAATACTTGAGAATAGTGGAATTTGTGGAGGTGTTCCTGG
TGCTCATCTATTACCTTCTGGTTATTTCGGTACACCTGACGGTATCAATAGTGGTGAATA
TTACAATGATAATTTCTATTATCCAACTGATAATGATGGT

ncy*yyyyfylyfsiln*ss**fntnfilfyeniekkq**l*lfiiksiyiy**kknx*K
KKXKXKXNLPXQXLKFXFXFXFXFXFKKK---

---MDFPRGCKSFGGSFCIPGEYSAWSSVYFESQPWISDLTMDGEDMIISIRDRGGDLDR
DVGTYDMLRACFDGDQLILENSGICGGVPGAHLLPSGYFGTPDGINSGEYYNDNFYYPTD
NDG

Frame A:
ncy*yyyyfylyfsiln*ss**fntnfilfyeniekkq**l*lfiiksiyiy**kknx*K
KKXKXKXNLPXQXLKFXFXFXFXFXFKKK---

---qwisqevvnhlvvhsvfqvniqlgqvfisnhnlgfqi*qwmvki**fqfvivvvi*i
vmlvpmic*elalmvin*ylrivefvevflvliyyllvisvhltvsivvnitmiisiiql
imm

Frame B:
iviniiiifiyifqy*inhpnnsiptlyyfmkilkknnnnynyl*lnlyifidkkktxkk
kkxkxkxiyqxkx*nfxfxfxfxxilkkk---

---ngfpkrl*iiwwfilysr*ifslvkclfrittldfrfnngw*rydnfns*sww*frs
*cwyl*yvksll*w*sint*e*wnlwrcswcssitfwlfryt*ryq*w*ilq**fllsn*
**w

Frame C:
lllilllflfiffntkliiliiqyqlyiil*ky*kktiiiiiiyn*iyiyllikkkplkk
kxxx*x*ftxxnxkixixixixixf*kk---

---MDFPRGCKSFGGSFCIPGEYSAWSSVYFESQPWISDLTMDGEDMIISIRDRGGDLDR
DVGTYDMLRACFDGDQLILENSGICGGVPGAHLLPSGYFGTPDGINSGEYYNDNFYYPTD
NDG

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHG224 (SHG224Q) /CSM/SH/SHG2-A/SHG224Q.Seq.d/                        718   0.0
SHA843 (SHA843Q) /CSM/SH/SHA8-B/SHA843Q.Seq.d/                        718   0.0
AHO144 (AHO144Q) /CSM/AH/AHO1-B/AHO144Q.Seq.d/                        718   0.0
AHL320 (AHL320Q) /CSM/AH/AHL3-A/AHL320Q.Seq.d/                        718   0.0
AHH460 (AHH460Q) /CSM/AH/AHH4-C/AHH460Q.Seq.d/                        718   0.0
AHE155 (AHE155Q) /CSM/AH/AHE1-C/AHE155Q.Seq.d/                        718   0.0
AHB403 (AHB403Q) /CSM/AH/AHB4-A/AHB403Q.Seq.d/                        718   0.0
AHA618 (AHA618Q) /CSM/AH/AHA6-A/AHA618Q.Seq.d/                        718   0.0
AHA605 (AHA605Q) /CSM/AH/AHA6-A/AHA605Q.Seq.d/                        716   0.0
AHM445 (AHM445Q) /CSM/AH/AHM4-B/AHM445Q.Seq.d/                        712   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BX571668|BX571668.20 Zebrafish DNA sequence from clone DKEY-47M8 in linkage group 10.    36   0.003  2
CT025903|CT025903.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-66H5.    42   0.003  2
BX324198|BX324198.20 Zebrafish DNA sequence from clone CH211-108M2 in linkage group 7.    36   0.003  5
AC092129|AC092129.3 Homo sapiens chromosome 16 clone RP11-140O8, complete sequence.    42   0.009  2
AC092125|AC092125.2 Homo sapiens chromosome 16 clone RP11-109D24, complete sequence.    42   0.009  2
BX950864|BX950864.17 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-158B13.    52   0.014  1
CC273850|CC273850.1 CH261-121B22_Sp6.1 CH261 Gallus gallus genomic clone CH261-121B22, DNA sequence.    40   0.044  2
AE014826|AE014826.1 Plasmodium falciparum 3D7 chromosome 14 section 11 of 13 of the complete sequence.    34   0.047  8
AR707084|AR707084.1 Sequence 27 from patent US 6933145.            40   0.056  3
AX392737|AX392737.1 Sequence 27 from Patent WO0212526.             40   0.056  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000383_3039(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334...    35   1.7
(Q54HX6) RecName: Full=Myb-like protein I;                             33   5.0
AE014187_365(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    33   5.0

 psg: 0.72  gvh: 0.51  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: nuclear
	 28.0 %: mitochondrial
	 28.0 %: cytoplasmic
	 12.0 %: cytoskeletal

>> prediction for SHA843 is nuc

>SHA843F.Seq
AATTGTTATTAATATTATTATTATTTTTATTTATATTTTTCAATACTAAATTAATCATCC
TAATAATTCAATACCAACTTTATATTATTTTATGAAAATATTGAAAAAAAACAATAATAA
TTATAATTATTTATAATTAAATCTATATATATTTATTGATAAAAAAAAAACCNTTAAAAA
AAAAAAANNAAAANTAAAANTAATTTACCAANNCAAATNCTAAAATTTTNATTTTNATTT
TNATTTTNATTTNATTTTAAAAAAAAAANNNNNNNNNN

>SHA843Z.Seq
NNNNNNNNNNCAATGGATTTCCCAAGAGGTTGTAAATCATTTGGTGGTTCATTCTGTATT
CCAGGTGAATATTCAGCTTGGTCAAGTGTTTATTTCGAATCACAACCTTGGATTTCAGAT
TTAACAATGGATGGTGAAGATATGATAATTTCAATTCGTGATCGTGGTGGTGATTTAGAT
CGTGATGTTGGTACCTATGATATGTTAAGAGCTTGCTTTGATGGTGATCAATTAATACTT
GAGAATAGTGGAATTTGTGGAGGTGTTCCTGGTGCTCATCTATTACCTTCTGGTTATTTC
GGTACACCTGACGGTATCAATAGTGGTGAATATTACAATGATAATTTCTATTATCCAACT
GATAATGATGGT

>SHA843P.Seq
AATTGTTATTAATATTATTATTATTTTTATTTATATTTTTCAATACTAAATTAATCATCC
TAATAATTCAATACCAACTTTATATTATTTTATGAAAATATTGAAAAAAAACAATAATAA
TTATAATTATTTATAATTAAATCTATATATATTTATTGATAAAAAAAAAACCNTTAAAAA
AAAAAAANNAAAANTAAAANTAATTTACCAANNCAAATNCTAAAATTTTNATTTTNATTT
TNATTTTNATTTNATTTTAAAAAAAAAA----------CAATGGATTTCCCAAGAGGTTG
TAAATCATTTGGTGGTTCATTCTGTATTCCAGGTGAATATTCAGCTTGGTCAAGTGTTTA
TTTCGAATCACAACCTTGGATTTCAGATTTAACAATGGATGGTGAAGATATGATAATTTC
AATTCGTGATCGTGGTGGTGATTTAGATCGTGATGTTGGTACCTATGATATGTTAAGAGC
TTGCTTTGATGGTGATCAATTAATACTTGAGAATAGTGGAATTTGTGGAGGTGTTCCTGG
TGCTCATCTATTACCTTCTGGTTATTTCGGTACACCTGACGGTATCAATAGTGGTGAATA
TTACAATGATAATTTCTATTATCCAACTGATAATGATGGT