SHA805
Library SH
(Link to library)
Clone ID SHA805
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14535-1
Original site URL
Representative seq. ID SHA805P
(Link to Original site)
Representative DNA sequence
>SHA805 (SHA805Q) /CSM/SH/SHA8-A/SHA805Q.Seq.d/
TTCGATGAAGAATATGAATTGGCAAAGCTTTTAAAAATTCAAAGTTTTCCAACTATAATT
GGTTTTTCAAATGGTAATTTCTTAAAAAAACATACTGGTCCATTCCGTAGTAAAAGCCAT
ATCCTTGAATTTTTAAATCACATTGAAACTGAACATAAAAAAAAATATTAATGTAAAACT
CTAAAAAAAAAAAAAAAAAAAAAAAANGNNTTNTTTAANNAAAAAAXXXXXXXXXXTTCG
ATNAAGAATATGAATTGGCAAAGCTTTTAAAAATTCAAAGTTTTCCANCTATAATTGGTT
TTTCAAATGGTAATTTCTTAAAAAAACATAGGGGTCCATTCCGTAGTAAAAAC
sequence update 2002.10.25
Translated Amino Acid sequence
fdeeyelakllkiqsfptiigfsngnflkkhtgpfrskshileflnhietehkkky*CKT
LKKKKKKKXXXFXXK---

---FDXEYELAKLLKIQSFPXIIGFSNGNFLKKHRGPFRSKN


Translated Amino Acid sequence (All Frames)
Frame A:
fdeeyelakllkiqsfptiigfsngnflkkhtgpfrskshileflnhietehkkky*CKT
LKKKKKKKXXXFXXK---

---FDXEYELAKLLKIQSFPXIIGFSNGNFLKKHRGPFRSKN

Frame B:
smknmnwqsf*kfkvfql*lvfqmvis*knilvhsvvkaislnf*itlklnikkninvkl
*kkkkkkkxxxlxkk---

---sxknmnwqsf*kfkvfxl*lvfqmvis*knigvhsvvk

Frame C:
r*ri*igkafknskfsnynwffkw*flkktywsip**kpyp*ifksh*n*t*kkilm*ns
kkkkkkkkxxx*xk---

---rxri*igkafknskfsxynwffkw*flkkt*gsip**k

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSI542 (SSI542Q) /CSM/SS/SSI5-B/SSI542Q.Seq.d/ 268 5e-71
SSG742 (SSG742Q) /CSM/SS/SSG7-B/SSG742Q.Seq.d/ 268 5e-71
SSG564 (SSG564Q) /CSM/SS/SSG5-C/SSG564Q.Seq.d/ 268 5e-71
SSF650 (SSF650Q) /CSM/SS/SSF6-C/SSF650Q.Seq.d/ 268 5e-71
SSF586 (SSF586Q) /CSM/SS/SSF5-D/SSF586Q.Seq.d/ 268 5e-71
SHA805 (SHA805Q) /CSM/SH/SHA8-A/SHA805Q.Seq.d/ 268 5e-71
SSF188 (SSF188Q) /CSM/SS/SSF1-D/SSF188Q.Seq.d/ 145 5e-34
VHI577 (VHI577Q) /CSM/VH/VHI5-D/VHI577Q.Seq.d/ 38 0.086
VFO260 (VFO260Q) /CSM/VF/VFO2-C/VFO260Q.Seq.d/ 36 0.34
VFJ560 (VFJ560Q) /CSM/VF/VFJ5-C/VFJ560Q.Seq.d/ 36 0.34

own update 2002.12. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BX952541|BX952541.1 Homo sapiens mRNA; EST DKFZp781H11199_r1 (from clone DKFZp781H11199). 32 0.069 3
AE017037|AE017037.1 Bacillus anthracis str. Ames section 14 of 18 of the complete genome. 44 0.13 3
AC025309|AC025309.2 Homo sapiens clone RP11-29I11, WORKING DRAFT SEQUENCE, 24 unordered pieces. 46 0.47 1
AC117442|AC117442.2 Homo sapiens chromosome 3 clone RP11-475K16, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces. 46 0.47 1
AL442183|AL442183.4 Human chromosome 14 DNA sequence BAC R-477N13 of library RPCI-11 from chromosome 14 of Homo sapiens (Human). 46 0.47 1
AC162820|AC162820.2 Bos taurus clone CH240-126C23, *** SEQUENCING IN PROGRESS ***, 19 unordered pieces. 38 0.49 2
CO737599|CO737599.1 SlLH03c18b19f1 squirrel heart library 1 Spermophilus lateralis cDNA clone 18b19 5', mRNA sequence. 34 0.57 2
CQ918866|CQ918866.1 Sequence 66 from Patent WO2004097052. 30 0.61 3
G28705|G28705.1 sWSS3976 Eric D. Green Homo sapiens STS genomic, sequence tagged site. 32 0.96 3
G18281|G18281.1 human chromosome 7 STS sWSS1269; single read, sequence tagged site. 32 0.96 3
dna update 2005.12.16
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54NX2) RecName: Full=Thioredoxin domain-containing protein, mi... 110 1e-23
CU459003_2720(CU459003|pid:none) Magnetospirillum gryphiswaldens... 34 1.7
AP008981_31(AP008981|pid:none) Orientia tsutsugamushi str. Ikeda... 33 2.2
BX538350_31(BX538350|pid:none) Cryptosporidium parvum chromosome... 33 2.2
CP001348_2165(CP001348|pid:none) Clostridium cellulolyticum H10,... 33 3.8
BX293980_71(BX293980|pid:none) Mycoplasma mycoides subsp. mycoid... 33 3.8
AM039952_2313(AM039952|pid:none) Xanthomonas campestris pv. vesi... 33 3.8
AM494475_434(AM494475|pid:none) Orientia tsutsugamushi Boryong c... 33 3.8
S77780(S77780;S46921) thioredoxin - Mycoplasma capricolum (fragm... 32 4.9
AE009951_686(AE009951|pid:none) Fusobacterium nucleatum subsp. n... 32 4.9
protein update 2009. 4.15
PSORT

psg: 0.74 gvh: 0.52 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.31 mip: 0.00
nuc: 0.31 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: nuclear
16.0 %: cytoplasmic
8.0 %: mitochondrial
8.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for SHA805 is nuc

5' end seq. ID SHA805F
5' end seq.
>SHA805F.Seq
TTCGATGAAGAATATGAATTGGCAAAGCTTTTAAAAATTCAAAGTTTTCCAACTATAATT
GGTTTTTCAAATGGTAATTTCTTAAAAAAACATACTGGTCCATTCCGTAGTAAAAGCCAT
ATCCTTGAATTTTTAAATCACATTGAAACTGAACATAAAAAAAAATATTAATGTAAAACT
CTAAAAAAAAAAAAAAAAAAAAAAAANGNNTTNTTTAANNAAAAAANNNNNNNNNN
Length of 5' end seq. 236
3' end seq. ID SHA805Z
3' end seq.
>SHA805Z.Seq
NNNNNNNNNNTTCGATNAAGAATATGAATTGGCAAAGCTTTTAAAAATTCAAAGTTTTCC
ANCTATAATTGGTTTTTCAAATGGTAATTTCTTAAAAAAACATAGGGGTCCATTCCGTAG
TAAAAAC
Length of 3' end seq. 127
Connected seq. ID SHA805P
Connected seq.
>SHA805P.Seq
TTCGATGAAGAATATGAATTGGCAAAGCTTTTAAAAATTCAAAGTTTTCCAACTATAATT
GGTTTTTCAAATGGTAATTTCTTAAAAAAACATACTGGTCCATTCCGTAGTAAAAGCCAT
ATCCTTGAATTTTTAAATCACATTGAAACTGAACATAAAAAAAAATATTAATGTAAAACT
CTAAAAAAAAAAAAAAAAAAAAAAAANGNNTTNTTTAANNAAAAAA----------TTCG
ATNAAGAATATGAATTGGCAAAGCTTTTAAAAATTCAAAGTTTTCCANCTATAATTGGTT
TTTCAAATGGTAATTTCTTAAAAAAACATAGGGGTCCATTCCGTAGTAAAAAC
Length of connected seq. 343
Full length Seq ID -
Full length Seq. -
Length of full length seq. -