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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFB102
Library AF
(Link to library)
Clone ID AFB102
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFB102Z
(Link to Original site)
Representative DNA sequence 
>AFB102 (AFB102Q) /CSM/AF/AFB1-A/AFB102Q.Seq.d/
XXXXXXXXXXACCATCTTCTTTATGCCAATCNCTNNCANCCCATCTTGATTCCCAAATCG
TNANCAAAGGTATCTTTGAAATGAACTGTTGNTNANGCAAAATTGNTAACNNAAACNA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---PSSLCQSLXXHLDSQIVXKGIFEMNCXXXKIXNXN
Translated Amino Acid sequence (All Frames) 
Frame A:
---PSSLCQSLXXHLDSQIVXKGIFEMNCXXXKIXNXN


Frame B:
---hllyanxxxpilipksxxkvslk*tvxxaklxtxt


Frame C:
---iffmpixxxps*fpnrxqryl*nellxxqnx*xkx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFB102 (AFB102Q) /CSM/AF/AFB1-A/AFB102Q.Seq.d/                        139   1e-32
VFO703 (VFO703Q) /CSM/VF/VFO7-A/VFO703Q.Seq.d/                        119   9e-27
VFN642 (VFN642Q) /CSM/VF/VFN6-B/VFN642Q.Seq.d/                        119   9e-27
VFM885 (VFM885Q) /CSM/VF/VFM8-D/VFM885Q.Seq.d/                        119   9e-27
VFM435 (VFM435Q) /CSM/VF/VFM4-B/VFM435Q.Seq.d/                        119   9e-27
VFM276 (VFM276Q) /CSM/VF/VFM2-D/VFM276Q.Seq.d/                        119   9e-27
VFM129 (VFM129Q) /CSM/VF/VFM1-B/VFM129Q.Seq.d/                        119   9e-27
VFL360 (VFL360Q) /CSM/VF/VFL3-C/VFL360Q.Seq.d/                        119   9e-27
VFL283 (VFL283Q) /CSM/VF/VFL2-D/VFL283Q.Seq.d/                        119   9e-27
VFL214 (VFL214Q) /CSM/VF/VFL2-A/VFL214Q.Seq.d/                        119   9e-27
own update 2001.11.24
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U36937|U36937.1 Dictyostelium discoideum calreticulin mRNA, complete cds.    70  1e-22  2
AC114041|AC114041.4 Rattus norvegicus clone CH230-187A1, WORKING DRAFT SEQUENCE, 3 unordered pieces.    40  5.1  1
AC112800|AC112800.6 Rattus norvegicus X BAC CH230-275F1 (Children's Hospital Oakland Research Institute) complete sequence.    40     78  2
dna update 2003. 7.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U36937_1(U36937|pid:none) Dictyostelium discoideum calreticulin ...    35   2e-04
protein update 2009. 3.26
PSORT 

 psg: 0.81  gvh: 0.44  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for AFB102 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFB102Z
3' end seq. 
>AFB102Z.Seq
----------ACCATCTTCTTTATGCCAATCNCTNNCANCCCATCTTGATTCCCAAATCG
TNANCAAAGGTATCTTTGAAATGAACTGTTGNTNANGCAAAATTGNTAACNNAAACNA
Length of 3' end seq. 108
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -