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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHA752
Library SH
(Link to library)
Clone ID SHA752
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15298-1|Contig-U15785-1
Original site URL
Representative seq. ID SHA752P
(Link to Original site)
Representative DNA sequence 
>SHA752 (SHA752Q) /CSM/SH/SHA7-C/SHA752Q.Seq.d/
ATNACCCACACACTTACAACTACTACTACTACTACTACTACAACAATATTACTATTACTA
TTACTTTTTCCACATAATCAAAAATAAAAATAAAAATAAAAATAAAAAAATAAAAAAAAT
AAAAATAAAACAAACGCAAACATAAACCACAAATCAAATTTTTTAAAAAATAAATTATTA
ATAAATAATAAAATTTTAAAAATAAAAAAAAAAANGATTAAAATAGTAATAATAGTATNG
GGGTATATATATTATTATTATTATTTTTTACATATAACAATAATCATAAAATCACTAAAN
GCATTCATAATAATTATNCAAGACTCATTTTTAAAANAATATTTATTTATTTATACTAAT
ATCAATAAAAANCAATAATAATATTAGTAGTNCNGTAATATCANGTAATAANCTTANCAA
AAAAAANGAAAANGAAANGATTTTNTTTTTTAAAAAAAAAAXXXXXXXXXXCAATTGAAC
ATTTATCACAACAATCACAAACTACAACACCAACACCTTTATCACCAATGACTGCAAGTA
CTTGTGGTTCTTGTCAACATCATCAACATCATAATTATCCACATAATATTAATCCGGTAT
CAGCATCATTGCCAACTACACCATCATCAATTCATGTTAATAATGCATCACTTGTAAATA
CAAATTTATTATCAATACAATTATCAAATGCTTTGTCATTATTAAACTCTGAACAAACTC
AAAAAACCAGTTTATCCGATGAATTGATGAAAACAAAAAATGAAAGAGCGGAAGCATTTA
GAAATGCAATGGAAGAACAATCAAAGATTGAAACACTAGAGAAAGAGTTGAACAAAATCG
AAATGCCTACAAGAAAGAACTCACACAAAAGAACAAAGTACAAGATTCTCTTCAAAAGAT
TTCCTCTACACTCAAAGAAAAGGAAACAATCATTCAATCATATCAAGAGATTATGAGTCA
ATTAAAATATAATTTAAAGGATTCATCATTAATGGATAAAAAAGATTCTGCCATTGTTCA
ACTACTTTATCAATTTTCGTCAATAACAAATAATTGTGTTGGTAGTAGTAGTGGTGGTAG
TAGCAGTAGTAATAATAGCGGCGCTGGAGGTAGTATTAATCCAACAGAGAATATATTGTT
GGTAAAAGACAACCANTGTAAATAAGTCATTAGAGATTCA
sequence update 2002.10.25
Translated Amino Acid sequence 
xpthlqlllllllqqyyyyyyffhiiknknknknkkikkikikqtqt*ttnqif*kiny*
*iikf*k*kkkxlk****yxgiyiiiiifyi*q*s*nh*xhs**lxkthf*XNIYLFILI
SIKXNNNISSXVISXNXLXKKXEXEXIXFFKKK---

---IEHLSQQSQTTTPTPLSPMTASTCGSCQHHQHHNYPHNINPVSASLPTTPSSIHVNN
ASLVNTNLLSIQLSNALSLLNSEQTQKTSLSDELMKTKNERAEAFRNAMEEQSKIETLEK
ELNKIEMPTRKNSHKRTKYKILFKRFPLHSKKRKQSFNHIKRL*vn*nii*rihh*wikk
ilplfnyfinfrq*qiivlvvvvvvvavviiaalevvliqqriycw*kttxvnkslei
Translated Amino Acid sequence (All Frames) 
Frame A:
xthtlttttttttttillllllfphnqk*k*k*k*knkknknktnaninhksnflknkll
innkilkikkkxikiviivxgyiyyyyyflhitiiikslxafiiixqdsflkxylfiytn
inkxq**y**xxnix**xxqkkxkxxdfxf*kk---

---qlniyhnnhklqhqhlyhq*lqvlvvlvniiniiiihiiliryqhhcqlhhhqfmli
mhhl*iqiyyqynyqmlchy*tlnklkkpvypmn**kqkmkerkhlemqwknnqrlkh*r
ks*tkskclqerthtkeqstrfsskdflytqrkgnnhsiisrdyesiki*fkgfiing*k
rfchcsttlsifvnnk*lcw***ww**q****rrwr*y*snreyivgkrqpx*ish*rf

Frame B:
xpthlqlllllllqqyyyyyyffhiiknknknknkkikkikikqtqt*ttnqif*kiny*
*iikf*k*kkkxlk****yxgiyiiiiifyi*q*s*nh*xhs**lxkthf*XNIYLFILI
SIKXNNNISSXVISXNXLXKKXEXEXIXFFKKK---

---n*tfittitnyntntfitndckylwflstssts*lst*y*sgisiianytiinsc**
citckykfiintiikcfviikl*tnsknqfir*idenkk*ksgsi*kcngrtikd*ntre
rveqnrnaykkeltqknkvqdslqkisstlkeketiiqsyqeimsqlkynlkdsslmdkk
dsaivqllyqfssitnncvgsssggssssnnsgaggsinptenillvkdnxck*virds

Frame C:
xphtynyyyyyyynnitititfst*skikikikikk*kk*k*nkrkhkpqikffkk*iin
k**nfknkkkxd*nsnnsxgvyillllfftynnnhkitkxihnnyxrlifkxifiyly*y
q*kxiiilvvx*yxvixlxkkxkxkxfxflkkk---

---IEHLSQQSQTTTPTPLSPMTASTCGSCQHHQHHNYPHNINPVSASLPTTPSSIHVNN
ASLVNTNLLSIQLSNALSLLNSEQTQKTSLSDELMKTKNERAEAFRNAMEEQSKIETLEK
ELNKIEMPTRKNSHKRTKYKILFKRFPLHSKKRKQSFNHIKRL*vn*nii*rihh*wikk
ilplfnyfinfrq*qiivlvvvvvvvavviiaalevvliqqriycw*kttxvnkslei
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHA752 (SHA752Q) /CSM/SH/SHA7-C/SHA752Q.Seq.d/                       1400   0.0
CHG282 (CHG282Q) /CSM/CH/CHG2-D/CHG282Q.Seq.d/                       1281   0.0
VHO163 (VHO163Q) /CSM/VH/VHO1-C/VHO163Q.Seq.d/                       1267   0.0
SLE156 (SLE156Q) /CSM/SL/SLE1-C/SLE156Q.Seq.d/                       1253   0.0
VHO509 (VHO509Q) /CSM/VH/VHO5-A/VHO509Q.Seq.d/                       1120   0.0
VHI221 (VHI221Q) /CSM/VH/VHI2-A/VHI221Q.Seq.d/                       1110   0.0
CHI236 (CHI236Q) /CSM/CH/CHI2-B/CHI236Q.Seq.d/                        920   0.0
VHL450 (VHL450Q) /CSM/VH/VHL4-C/VHL450Q.Seq.d/                        866   0.0
VHE376 (VHE376Q) /CSM/VH/VHE3-D/VHE376Q.Seq.d/                        640   0.0
CHI217 (CHI217Q) /CSM/CH/CHI2-A/CHI217Q.Seq.d/                        624   e-178
own update 2002.10.14
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    36   1e-08  12
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    44   6e-08  10
AL592077|AL592077.8 Zebrafish DNA sequence from clone XX-DZ35C18.    52   9e-05  2
CT301886|CT301886.1 Sus scrofa genomic clone CH242-214G5, genomic survey sequence.    60   1e-04  1
DN959691|DN959691.1 USDA-FP/ARO_15521 Star Ruby grapefruit hot water-treated flavedo Citrus x paradisi cDNA clone Hw-27_F05 5', mRNA sequence.    52   2e-04  2
AC113390|AC113390.3 Homo sapiens chromosome 5 clone RP11-360C3, complete sequence.    50   3e-04  2
AC127460|AC127460.2 Homo sapiens chromosome 5 clone RP11-689B23, complete sequence.    50   3e-04  2
AC118193|AC118193.9 Mus musculus chromosome 8, clone RP23-241A10, complete sequence.    50   4e-04  3
CV792687|CV792687.1 c-030112-2w_E01.abd cDNA library of Tamarix androssowii Tamarix androssowii cDNA, mRNA sequence.    58   4e-04  1
CF199667|CF199667.1 EST1268 Tamarix androssowii leaf Tamarix androssowii cDNA, mRNA sequence.    58   4e-04  1
dna update 2005.12.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

T18352(T18352) protein P120 - Mycoplasma hominis  &U22019_1(U220...    38   0.061
AK147211_1(AK147211|pid:none) Mus musculus 15 days embryo liver ...    33   0.097
AJ312390_1(AJ312390|pid:none) Mus musculus mRNA for nonmuscle he...    33   0.098
AK148323_1(AK148323|pid:none) Mus musculus B16 F10Y cells cDNA, ...    33   0.10
(Q62812) RecName: Full=Myosin-9; AltName: Full=Myosin heavy chai...    32   0.27
T18356(T18356) membrane protein p120 - Mycoplasma hominis  &X784...    38   0.58
CP001022_2725(CP001022|pid:none) Exiguobacterium sibiricum 255-1...    38   0.58
EF014120_1(EF014120|pid:none) Synthetic construct flag-tagged pr...    38   0.75
CP000312_1813(CP000312|pid:none) Clostridium perfringens SM101, ...    37   0.98
(P35580) RecName: Full=Myosin-10; AltName: Full=Myosin heavy cha...    30   1.2
protein update 2009. 4.15
PSORT 

 psg: 0.86  gvh: 0.37  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.07  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 28.0 %: cytoplasmic
	 24.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SHA752 is nuc
5' end seq. ID SHA752F
5' end seq. 
>SHA752F.Seq
ATNACCCACACACTTACAACTACTACTACTACTACTACTACAACAATATTACTATTACTA
TTACTTTTTCCACATAATCAAAAATAAAAATAAAAATAAAAATAAAAAAATAAAAAAAAT
AAAAATAAAACAAACGCAAACATAAACCACAAATCAAATTTTTTAAAAAATAAATTATTA
ATAAATAATAAAATTTTAAAAATAAAAAAAAAAANGATTAAAATAGTAATAATAGTATNG
GGGTATATATATTATTATTATTATTTTTTACATATAACAATAATCATAAAATCACTAAAN
GCATTCATAATAATTATNCAAGACTCATTTTTAAAANAATATTTATTTATTTATACTAAT
ATCAATAAAAANCAATAATAATATTAGTAGTNCNGTAATATCANGTAATAANCTTANCAA
AAAAAANGAAAANGAAANGATTTTNTTTTTTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 471
3' end seq. ID SHA752Z
3' end seq. 
>SHA752Z.Seq
NNNNNNNNNNCAATTGAACATTTATCACAACAATCACAAACTACAACACCAACACCTTTA
TCACCAATGACTGCAAGTACTTGTGGTTCTTGTCAACATCATCAACATCATAATTATCCA
CATAATATTAATCCGGTATCAGCATCATTGCCAACTACACCATCATCAATTCATGTTAAT
AATGCATCACTTGTAAATACAAATTTATTATCAATACAATTATCAAATGCTTTGTCATTA
TTAAACTCTGAACAAACTCAAAAAACCAGTTTATCCGATGAATTGATGAAAACAAAAAAT
GAAAGAGCGGAAGCATTTAGAAATGCAATGGAAGAACAATCAAAGATTGAAACACTAGAG
AAAGAGTTGAACAAAATCGAAATGCCTACAAGAAAGAACTCACACAAAAGAACAAAGTAC
AAGATTCTCTTCAAAAGATTTCCTCTACACTCAAAGAAAAGGAAACAATCATTCAATCAT
ATCAAGAGATTATGAGTCAATTAAAATATAATTTAAAGGATTCATCATTAATGGATAAAA
AAGATTCTGCCATTGTTCAACTACTTTATCAATTTTCGTCAATAACAAATAATTGTGTTG
GTAGTAGTAGTGGTGGTAGTAGCAGTAGTAATAATAGCGGCGCTGGAGGTAGTATTAATC
CAACAGAGAATATATTGTTGGTAAAAGACAACCANTGTAAATAAGTCATTAGAGATTCA
Length of 3' end seq. 719
Connected seq. ID SHA752P
Connected seq. 
>SHA752P.Seq
ATNACCCACACACTTACAACTACTACTACTACTACTACTACAACAATATTACTATTACTA
TTACTTTTTCCACATAATCAAAAATAAAAATAAAAATAAAAATAAAAAAATAAAAAAAAT
AAAAATAAAACAAACGCAAACATAAACCACAAATCAAATTTTTTAAAAAATAAATTATTA
ATAAATAATAAAATTTTAAAAATAAAAAAAAAAANGATTAAAATAGTAATAATAGTATNG
GGGTATATATATTATTATTATTATTTTTTACATATAACAATAATCATAAAATCACTAAAN
GCATTCATAATAATTATNCAAGACTCATTTTTAAAANAATATTTATTTATTTATACTAAT
ATCAATAAAAANCAATAATAATATTAGTAGTNCNGTAATATCANGTAATAANCTTANCAA
AAAAAANGAAAANGAAANGATTTTNTTTTTTAAAAAAAAAA----------CAATTGAAC
ATTTATCACAACAATCACAAACTACAACACCAACACCTTTATCACCAATGACTGCAAGTA
CTTGTGGTTCTTGTCAACATCATCAACATCATAATTATCCACATAATATTAATCCGGTAT
CAGCATCATTGCCAACTACACCATCATCAATTCATGTTAATAATGCATCACTTGTAAATA
CAAATTTATTATCAATACAATTATCAAATGCTTTGTCATTATTAAACTCTGAACAAACTC
AAAAAACCAGTTTATCCGATGAATTGATGAAAACAAAAAATGAAAGAGCGGAAGCATTTA
GAAATGCAATGGAAGAACAATCAAAGATTGAAACACTAGAGAAAGAGTTGAACAAAATCG
AAATGCCTACAAGAAAGAACTCACACAAAAGAACAAAGTACAAGATTCTCTTCAAAAGAT
TTCCTCTACACTCAAAGAAAAGGAAACAATCATTCAATCATATCAAGAGATTATGAGTCA
ATTAAAATATAATTTAAAGGATTCATCATTAATGGATAAAAAAGATTCTGCCATTGTTCA
ACTACTTTATCAATTTTCGTCAATAACAAATAATTGTGTTGGTAGTAGTAGTGGTGGTAG
TAGCAGTAGTAATAATAGCGGCGCTGGAGGTAGTATTAATCCAACAGAGAATATATTGTT
GGTAAAAGACAACCANTGTAAATAAGTCATTAGAGATTCA
Length of connected seq. 1170
Full length Seq ID -
Full length Seq. -
Length of full length seq. -