SHA745
Library SH
(Link to library)
Clone ID SHA745
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SHA745 (SHA745Q) /CSM/SH/SHA7-B/SHA745Q.Seq.d/
XXXXXXXXXXCTTTAAAGTTGATAAATCAAAGAAAAGTGCTCAACAAGTTGAAATTGCTT
TAGAGAATGAAAGACTTTATCTTCAAGAAGTTGAAGATGCTCCAGAGAGACTATATGAAG
AAATTCATAATTCCAATTTGAATAAAGCAGTTCAAGAGGCTGAAGAAATTGAAAGACAAC
AAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATG
TTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAAC
GTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTT
TAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCT
TACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGA
ATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAAC
AAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAAC
AAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTG
AATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGAGAGAATTTAGTTCA
AGAGAAACAACAATCTCCGACCAAATTAAAAA
sequence update 2002. 9.10
Translated Amino Acid sequence
---FKVDKSKKSAQQVEIALENERLYLQEVEDAPERLYEEIHNSNLNKAVQEAEEIERQQ
NGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFL
DENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQ
IVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQERI*fk
rnnnlrpn*k


Translated Amino Acid sequence (All Frames)
Frame A:
---FKVDKSKKSAQQVEIALENERLYLQEVEDAPERLYEEIHNSNLNKAVQEAEEIERQQ
NGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFL
DENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQ
IVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQERI*fk
rnnnlrpn*k


Frame B:
---lklinqrkvlnklkll*rmkdfifkklkmlqrdymkkfiipi*ikqfkrlkklkdnk
mvmvhll*tlirl*lkwemlkimklpmnkmplnklniynvlkmvkismsmklpnmklpf*
mkmnkmllnykmkwtn*nsylkrmkknnfqikiynnlmrmkinnnnkdnnkfkqqmlnnk
slnnlklsknfkdkinkrnkkfnkrtmlst*vmlkklnlnwmlnwlkiinkrikrefssr
ettisdqik


Frame C:
---*s**ikekcsts*ncfre*ktlssrs*rcsreti*rns*fqfe*sssrg*rn*kttk
w*wftcckls*dcnsngkc*k**nyq*trch*tsstftty*kw*ryr*v*scpt*sclfr
*k*trcc*itk*ngpirtlt*re*rrtifk*kfttt**e*ksttttrtttsssnkc*ttn
r*tt*syqrisktrstketknstrercclle*c*ksst*igc*ig*k**tresrenlvqe
kqqsptklk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHA745 (SHA745Q) /CSM/SH/SHA7-B/SHA745Q.Seq.d/ 872 0.0
SHA660 (SHA660Q) /CSM/SH/SHA6-C/SHA660Q.Seq.d/ 872 0.0
SFG212 (SFG212Q) /CSM/SF/SFG2-A/SFG212Q.Seq.d/ 872 0.0
SFF541 (SFF541Q) /CSM/SF/SFF5-B/SFF541Q.Seq.d/ 872 0.0
SFC806 (SFC806Q) /CSM/SF/SFC8-A/SFC806Q.Seq.d/ 872 0.0
CHR131 (CHR131Q) /CSM/CH/CHR1-B/CHR131Q.Seq.d/ 872 0.0
CHQ337 (CHQ337Q) /CSM/CH/CHQ3-B/CHQ337Q.Seq.d/ 872 0.0
CHP603 (CHP603Q) /CSM/CH/CHP6-A/CHP603Q.Seq.d/ 872 0.0
CHO814 (CHO814Q) /CSM/CH/CHO8-A/CHO814Q.Seq.d/ 872 0.0
CHO755 (CHO755Q) /CSM/CH/CHO7-C/CHO755Q.Seq.d/ 872 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds. 872 0.0 4
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 103 5e-18 1
DT364098|DT364098.1 JGI_ANNN9278.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN9278 3', mRNA sequence. 48 0.26 1
DT347978|DT347978.1 JGI_CAAX10802.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX10802 5', mRNA sequence. 48 0.26 1
DT309975|DT309975.1 JGI_CAAX1517.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 5', mRNA sequence. 48 0.26 1
DT309974|DT309974.1 JGI_CAAX1517.rev CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 3', mRNA sequence. 48 0.26 1
DT102344|DT102344.1 JGI_ANNN5669.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN5669 3', mRNA sequence. 48 0.26 1
CA966907|CA966907.2 CcLL10a35e10f1 Carp liver library 5 Cyprinus carpio cDNA clone 35e10 5' similar to zgc.nt BC059805, mRNA sequence. 48 0.26 1
AC165111|AC165111.1 Bos taurus clone CH240-164H19, *** SEQUENCING IN PROGRESS ***, 25 unordered pieces. 42 0.28 2
CB855513|CB855513.1 ri40a10.y1 Meloidogyne chitwoodi J2 pDNR LIB Meloidogyne chitwoodi cDNA 5', mRNA sequence. 32 0.41 3
dna update 2005.12.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags... 312 1e-85
AM920435_502(AM920435|pid:none) Penicillium chrysogenum Wisconsi... 39 0.13
AF063866_46(AF063866|pid:none) Melanoplus sanguinipes entomopoxv... 39 0.17
AJ969441_1(AJ969441|pid:none) Trypanosoma cruzi garp gene for gl... 39 0.17
(Q54DK4) RecName: Full=Alpha-protein kinase 1; Short=AK... 39 0.22
CR522870_613(CR522870|pid:none) Desulfotalea psychrophila LSv54 ... 39 0.22
EU579525_1(EU579525|pid:none) Plasmodium yoelii sporozoite and l... 38 0.29
AM910996_565(AM910996|pid:none) Plasmodium knowlesi strain H chr... 38 0.38
(Q55GK0) RecName: Full=GATA zinc finger domain-containing protei... 37 0.49
CP001078_829(CP001078|pid:none) Clostridium botulinum E3 str. Al... 37 0.64
protein update 2009. 5.28
PSORT

psg: 0.68 gvh: 0.17 alm: 0.58 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
36.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: plasma membrane
4.0 %: endoplasmic reticulum

>> prediction for SHA745 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SHA745Z
3' end seq.
>SHA745Z.Seq
NNNNNNNNNNCTTTAAAGTTGATAAATCAAAGAAAAGTGCTCAACAAGTTGAAATTGCTT
TAGAGAATGAAAGACTTTATCTTCAAGAAGTTGAAGATGCTCCAGAGAGACTATATGAAG
AAATTCATAATTCCAATTTGAATAAAGCAGTTCAAGAGGCTGAAGAAATTGAAAGACAAC
AAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATG
TTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAAC
GTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTT
TAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCT
TACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGA
ATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAAC
AAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAAC
AAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTG
AATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGAGAGAATTTAGTTCA
AGAGAAACAACAATCTCCGACCAAATTAAAAA
Length of 3' end seq. 752
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -